DatasetMEP.MEP.ery_Pheno.cls
#Group3_versus_Group4.MEP.ery_Pheno.cls
#Group3_versus_Group4_repos
PhenotypeMEP.ery_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class3
GeneSetHALLMARK_INTERFERON_GAMMA_RESPONSE
Enrichment Score (ES)-0.44824845
Normalized Enrichment Score (NES)-1.4074539
Nominal p-value0.11087866
FDR q-value0.88455766
FWER p-Value0.721
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Ciita2140.8210.0098No
2Upp15180.6760.0133No
3Slamf79140.5850.0115No
4Cd749340.5810.0232No
5Bank111280.5470.0279No
6Arid5b11980.5350.0369No
7Serping113000.5170.0443No
8Irf814180.5050.0509No
9Ccl515150.4960.0580No
10Irf418930.4590.0541No
11Cfh34300.3460.0056No
12Cmklr136440.3350.0050No
13Ido143820.297-0.0155No
14Cd8643950.296-0.0096No
15Fgl254380.250-0.0422No
16Stat258490.232-0.0521No
17Myd8858620.232-0.0476No
18Fpr159810.227-0.0470No
19Nup9362720.220-0.0529No
20Pfkp66340.214-0.0614No
21Pde4b66970.211-0.0591No
22Wars170740.196-0.0686No
23Ifi3073360.186-0.0742No
24C1s177140.172-0.0842No
25Pla2g4a77500.171-0.0818No
26Tor1b79980.163-0.0873No
27Socs381900.156-0.0909No
28Psmb282650.152-0.0903No
29Il4ra82800.152-0.0876No
30Icam183600.149-0.0873No
31Lats284700.147-0.0881No
32Cfb89140.132-0.1014No
33Cdkn1a91460.125-0.1071No
34Vcam191800.124-0.1057No
35Cd6995790.111-0.1178No
36Ptpn1103980.091-0.1457No
37St8sia4105720.086-0.1501No
38Itgb7106160.085-0.1499No
39Rapgef6107640.081-0.1535No
40Sppl2a108120.080-0.1535No
41Casp8108230.079-0.1522No
42Jak2110620.073-0.1593No
43Tapbp114140.064-0.1707No
44Bpgm114830.062-0.1719No
45Casp1117610.054-0.1808No
46Hif1a118090.053-0.1814No
47Psmb9119590.049-0.1857No
48Isoc1119890.048-0.1858No
49Znfx1120380.047-0.1865No
50Plscr1121270.045-0.1887No
51Lap3133170.015-0.2318No
52Marchf1135610.012-0.2404No
53Pml135670.012-0.2403No
54Mthfd2139450.004-0.2540No
55St3gal5140880.001-0.2591No
56Irf114879-0.001-0.2879No
57Rbck114909-0.002-0.2889No
58Ripk215066-0.006-0.2945No
59Il18bp15520-0.015-0.3107No
60Casp315997-0.027-0.3274No
61Fcgr116349-0.036-0.3395No
62Psma216487-0.040-0.3436No
63Nampt16524-0.040-0.3440No
64Rnf3116588-0.042-0.3454No
65Fas16681-0.045-0.3478No
66Cmtr117051-0.054-0.3601No
67Ifit217156-0.057-0.3627No
68Casp717168-0.057-0.3619No
69Ncoa317388-0.063-0.3685No
70Il1517404-0.064-0.3677No
71Adar17500-0.066-0.3697No
72Tnfaip217692-0.069-0.3752No
73Il617789-0.072-0.3772No
74Tap117898-0.074-0.3795No
75Sri18021-0.078-0.3823No
76Vamp518340-0.085-0.3921No
77Psma318454-0.089-0.3943No
78Irf218605-0.092-0.3978No
79Ptpn618908-0.100-0.4066No
80Slc25a2818998-0.103-0.4077No
81Sod219332-0.113-0.4174No
82Peli119394-0.115-0.4171No
83Ifi3519528-0.118-0.4194No
84Ptpn219736-0.124-0.4243No
85Arl4a19789-0.125-0.4235No
86Lysmd219914-0.129-0.4253No
87Bst220006-0.132-0.4258No
88Helz220084-0.135-0.4257No
89B2m20334-0.143-0.4317No
90Psmb1020530-0.149-0.4356No
91Trafd120590-0.151-0.4345No
92Auts220598-0.151-0.4315No
93Pnp20731-0.156-0.4330No
94Ifnar220870-0.159-0.4346No
95Trim2121043-0.165-0.4373No
96Sspn21119-0.168-0.4364No
97Pnpt121431-0.179-0.4439No
98Ripk121551-0.183-0.4443Yes
99Ifit321604-0.185-0.4422Yes
100Vamp821702-0.189-0.4417Yes
101Samhd121712-0.189-0.4380Yes
102Ifitm221799-0.193-0.4370Yes
103Il15ra21842-0.195-0.4343Yes
104Cxcl1022109-0.204-0.4396Yes
105Samd9l22135-0.205-0.4361Yes
106Ly6e22177-0.207-0.4332Yes
107Psme222201-0.208-0.4296Yes
108Gpr1822278-0.210-0.4278Yes
109Sp11022337-0.213-0.4254Yes
110Cd27422349-0.213-0.4212Yes
111H2-Aa22459-0.217-0.4205Yes
112Lgals3bp22460-0.217-0.4159Yes
113H2-DMa22485-0.218-0.4121Yes
114Il722517-0.219-0.4085Yes
115Psmb822575-0.221-0.4058Yes
116Nmi22966-0.229-0.4151Yes
117Isg2023044-0.233-0.4129Yes
118Cmpk223070-0.234-0.4088Yes
119Mvp23160-0.238-0.4069Yes
120Gch123228-0.241-0.4042Yes
121Herc623458-0.250-0.4072Yes
122Nlrc523487-0.252-0.4028Yes
123Casp423507-0.253-0.3981Yes
124Tnfaip323521-0.254-0.3931Yes
125Trim2623600-0.258-0.3904Yes
126Tnfaip623822-0.261-0.3929Yes
127Tdrd723897-0.265-0.3899Yes
128Stat123990-0.270-0.3874Yes
129Cd4024114-0.276-0.3860Yes
130Eif2ak224372-0.289-0.3891Yes
131Lcp224389-0.290-0.3835Yes
132Rnf21324448-0.293-0.3793Yes
133Rsad225000-0.319-0.3925Yes
134Oasl125057-0.322-0.3877Yes
135Btg125310-0.338-0.3896Yes
136Trim2525323-0.340-0.3827Yes
137Parp1225341-0.341-0.3760Yes
138Trim1425346-0.342-0.3688Yes
139Tnfsf1025436-0.350-0.3646Yes
140Gbp325591-0.364-0.3624Yes
141Irf925593-0.364-0.3546Yes
142Irf525810-0.376-0.3544Yes
143Stat325919-0.385-0.3501Yes
144Ifi2725966-0.390-0.3433Yes
145Il2rb26024-0.397-0.3369Yes
146Nfkb126029-0.398-0.3285Yes
147Pim126257-0.420-0.3278Yes
148Ifih126260-0.420-0.3188Yes
149Zbp126329-0.424-0.3122Yes
150P2ry1426333-0.424-0.3032Yes
151Eif4e326395-0.428-0.2962Yes
152Nfkbia26400-0.429-0.2871Yes
153Socs126435-0.433-0.2791Yes
154Ogfr26439-0.434-0.2699Yes
155Stat426502-0.441-0.2627Yes
156Isg1526603-0.451-0.2566Yes
157Epsti126606-0.451-0.2470Yes
158Psme126654-0.457-0.2389Yes
159Irf726817-0.483-0.2344Yes
160Txnip26823-0.483-0.2242Yes
161Selp26872-0.490-0.2155Yes
162Ube2l627060-0.527-0.2110Yes
163Rtp427146-0.548-0.2023Yes
164Nod127157-0.551-0.1908Yes
165Batf227174-0.556-0.1795Yes
166Parp1427215-0.569-0.1687Yes
167Oas327238-0.574-0.1572Yes
168Mx227299-0.597-0.1465Yes
169Ifitm327324-0.611-0.1343Yes
170Xaf127356-0.631-0.1219Yes
171Rigi27378-0.642-0.1088Yes
172Ddx6027381-0.644-0.0951Yes
173Dhx5827458-0.698-0.0828Yes
174Cd3827463-0.701-0.0679Yes
175Usp1827505-0.755-0.0532Yes
176Il10ra27549-0.835-0.0368Yes
177Ifi4427554-0.849-0.0187Yes
178Oas227581-0.9530.0008Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_GAMMA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_GAMMA_RESPONSE