Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.ery_Pheno.cls #Group3_versus_Group4.MEP.ery_Pheno.cls #Group3_versus_Group4_repos
Phenotype	MEP.ery_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.2250967
Normalized Enrichment Score (NES)	-0.94670236
Nominal p-value	0.62823063
FDR q-value	1.0
FWER p-Value	0.998

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fstl1	224	0.810	0.0117	No
2	Efemp2	292	0.772	0.0283	No
3	Gm21451	502	0.680	0.0374	No
4	Eno2	524	0.675	0.0532	No
5	Inhba	558	0.664	0.0683	No
6	Sntb1	834	0.605	0.0732	No
7	Serpine2	843	0.602	0.0877	No
8	Tfpi2	979	0.573	0.0969	No
9	Gpx7	1050	0.563	0.1082	No
10	Fbn2	1411	0.506	0.1075	No
11	Aplp1	1852	0.463	0.1028	No
12	Gja1	1969	0.448	0.1096	No
13	Vegfc	2076	0.435	0.1165	No
14	Lama2	2097	0.434	0.1264	No
15	Fbln2	2128	0.432	0.1359	No
16	Mfap5	2141	0.432	0.1461	No
17	Col1a1	2287	0.424	0.1512	No
18	Mgp	2329	0.421	0.1601	No
19	Myl9	2744	0.398	0.1548	No
20	Tpm2	2819	0.392	0.1617	No
21	Bdnf	2873	0.387	0.1693	No
22	Crlf1	2958	0.385	0.1757	No
23	Sparc	3080	0.374	0.1805	No
24	Fbln5	3140	0.369	0.1874	No
25	Acta2	3203	0.365	0.1942	No
26	Cdh11	3443	0.346	0.1939	No
27	Nt5e	3732	0.329	0.1915	No
28	Ecm1	3798	0.325	0.1972	No
29	Dab2	3860	0.321	0.2028	No
30	Lgals1	3938	0.315	0.2078	No
31	Qsox1	3984	0.312	0.2138	No
32	Cxcl12	4257	0.300	0.2112	No
33	Mmp14	4720	0.281	0.2013	No
34	Bgn	4968	0.269	0.1989	No
35	Pdlim4	5050	0.265	0.2025	No
36	Cd44	5367	0.254	0.1972	No
37	Timp1	5673	0.240	0.1920	No
38	Lamc1	5866	0.231	0.1907	No
39	Col6a2	5952	0.227	0.1932	No
40	Calu	6332	0.217	0.1847	No
41	Col3a1	6386	0.216	0.1881	No
42	Col5a1	6819	0.206	0.1774	No
43	Itgb3	6861	0.204	0.1809	No
44	Sfrp4	6906	0.203	0.1843	No
45	Lrp1	6992	0.199	0.1861	No
46	Colgalt1	7265	0.189	0.1809	No
47	Dcn	7352	0.185	0.1823	No
48	Fuca1	7567	0.179	0.1789	No
49	Glipr1	8097	0.160	0.1635	No
50	P3h1	8141	0.158	0.1658	No
51	Anpep	8263	0.152	0.1652	No
52	Tgfbi	8408	0.148	0.1635	No
53	Itga5	8487	0.146	0.1643	No
54	Tagln	8571	0.144	0.1648	No
55	Ppib	8926	0.132	0.1551	No
56	Vcam1	9180	0.124	0.1490	No
57	Loxl1	9514	0.113	0.1396	No
58	Plod1	9925	0.102	0.1272	No
59	Spock1	9928	0.102	0.1296	No
60	Col1a2	10539	0.087	0.1095	No
61	Tpm4	10563	0.086	0.1108	No
62	Emp3	10624	0.084	0.1106	No
63	Vegfa	10626	0.084	0.1127	No
64	Igfbp2	10851	0.079	0.1065	No
65	Fstl3	10992	0.075	0.1032	No
66	Gpc1	11051	0.073	0.1029	No
67	Flna	11118	0.072	0.1023	No
68	Mylk	11266	0.068	0.0986	No
69	Thy1	11292	0.068	0.0993	No
70	Pcolce2	11495	0.062	0.0935	No
71	Slit3	11814	0.053	0.0832	No
72	Capg	11829	0.053	0.0840	No
73	Tgm2	12098	0.046	0.0753	No
74	Wipf1	12101	0.046	0.0764	No
75	Sgcg	12334	0.039	0.0689	No
76	Sgcd	12496	0.035	0.0639	No
77	Gadd45b	12665	0.031	0.0585	No
78	Lamc2	12666	0.031	0.0592	No
79	Fbn1	12933	0.024	0.0502	No
80	Cap2	13330	0.015	0.0361	No
81	Areg	13436	0.013	0.0326	No
82	Tgfbr3	13982	0.003	0.0128	No
83	Cthrc1	14283	0.000	0.0018	No
84	Serpinh1	14321	0.000	0.0005	No
85	Comp	14996	-0.004	-0.0240	No
86	Matn2	15274	-0.011	-0.0338	No
87	Tpm1	15363	-0.011	-0.0367	No
88	Dpysl3	15418	-0.013	-0.0384	No
89	Notch2	15467	-0.014	-0.0398	No
90	Itgb1	15757	-0.021	-0.0498	No
91	Itgb5	15867	-0.024	-0.0532	No
92	Itgav	15917	-0.025	-0.0544	No
93	Cadm1	16008	-0.028	-0.0570	No
94	Basp1	16230	-0.033	-0.0642	No
95	Bmp1	16364	-0.037	-0.0682	No
96	Jun	16413	-0.038	-0.0690	No
97	Plod3	16522	-0.040	-0.0719	No
98	Serpine1	16543	-0.041	-0.0717	No
99	Fas	16681	-0.045	-0.0755	No
100	Nid2	16887	-0.049	-0.0818	No
101	Col16a1	17276	-0.060	-0.0945	No
102	Plod2	17370	-0.063	-0.0963	No
103	Il15	17404	-0.064	-0.0960	No
104	Tnc	17453	-0.065	-0.0961	No
105	Col6a3	17550	-0.067	-0.0980	No
106	Col8a2	17564	-0.067	-0.0968	No
107	Il6	17789	-0.072	-0.1032	No
108	Sgcb	17970	-0.076	-0.1079	No
109	Fermt2	17995	-0.077	-0.1069	No
110	Magee1	17999	-0.077	-0.1051	No
111	Thbs2	18090	-0.080	-0.1064	No
112	Rhob	18096	-0.080	-0.1046	No
113	Fzd8	18151	-0.081	-0.1046	No
114	Tgfb1	18170	-0.082	-0.1033	No
115	Copa	18676	-0.094	-0.1194	No
116	Oxtr	19022	-0.104	-0.1294	No
117	Mcm7	19181	-0.108	-0.1325	No
118	Col4a1	19361	-0.114	-0.1362	No
119	Id2	19373	-0.114	-0.1338	No
120	Fgf2	20922	-0.161	-0.1863	No
121	Col4a2	21167	-0.170	-0.1910	No
122	Slit2	21171	-0.170	-0.1869	No
123	Pcolce	21219	-0.171	-0.1844	No
124	Igfbp4	21730	-0.191	-0.1983	No
125	Sdc1	21827	-0.194	-0.1971	No
126	Htra1	21993	-0.201	-0.1981	No
127	Mmp2	22072	-0.203	-0.1960	No
128	Sat1	22074	-0.203	-0.1911	No
129	Vim	22497	-0.218	-0.2011	No
130	Ntm	23157	-0.238	-0.2192	Yes
131	Cald1	23208	-0.240	-0.2152	Yes
132	Lama3	23359	-0.246	-0.2146	Yes
133	Fn1	23511	-0.253	-0.2139	Yes
134	Tnfaip3	23521	-0.254	-0.2080	Yes
135	Sdc4	23589	-0.257	-0.2041	Yes
136	Pmepa1	23808	-0.261	-0.2056	Yes
137	Tnfrsf12a	23917	-0.266	-0.2030	Yes
138	Gadd45a	23991	-0.270	-0.1990	Yes
139	Col12a1	24080	-0.274	-0.1955	Yes
140	Lama1	24094	-0.275	-0.1892	Yes
141	Slc6a8	24123	-0.277	-0.1834	Yes
142	Col7a1	24153	-0.278	-0.1777	Yes
143	Col11a1	24386	-0.290	-0.1790	Yes
144	Dst	24405	-0.291	-0.1725	Yes
145	Pvr	24442	-0.292	-0.1666	Yes
146	Cxcl5	24459	-0.293	-0.1600	Yes
147	Timp3	24475	-0.294	-0.1533	Yes
148	Thbs1	24506	-0.296	-0.1471	Yes
149	Col5a3	24667	-0.305	-0.1455	Yes
150	Pdgfrb	24683	-0.306	-0.1385	Yes
151	Pmp22	24834	-0.314	-0.1362	Yes
152	Eln	25290	-0.337	-0.1445	Yes
153	Vcan	25403	-0.347	-0.1401	Yes
154	Plaur	25535	-0.358	-0.1361	Yes
155	Ecm2	25804	-0.375	-0.1366	Yes
156	Sfrp1	25844	-0.379	-0.1287	Yes
157	Prrx1	25887	-0.382	-0.1208	Yes
158	Fbln1	26114	-0.408	-0.1191	Yes
159	Matn3	26204	-0.412	-0.1122	Yes
160	Fap	26328	-0.424	-0.1062	Yes
161	Pfn2	26429	-0.432	-0.0992	Yes
162	Cdh6	26460	-0.437	-0.0896	Yes
163	Gem	26709	-0.465	-0.0872	Yes
164	Col5a2	26969	-0.507	-0.0842	Yes
165	Spp1	27001	-0.515	-0.0726	Yes
166	Mest	27061	-0.527	-0.0618	Yes
167	Itga2	27087	-0.532	-0.0497	Yes
168	Abi3bp	27206	-0.565	-0.0401	Yes
169	Edil3	27249	-0.579	-0.0274	Yes
170	Cdh2	27521	-0.776	-0.0182	Yes
171	Adam12	27559	-0.858	0.0016	Yes