| Dataset | MEP.MEP.ery_Pheno.cls #Group3_versus_Group4.MEP.ery_Pheno.cls #Group3_versus_Group4_repos |
| Phenotype | MEP.ery_Pheno.cls#Group3_versus_Group4_repos |
| Upregulated in class | 3 |
| GeneSet | HALLMARK_DNA_REPAIR |
| Enrichment Score (ES) | -0.14047833 |
| Normalized Enrichment Score (NES) | -0.6139979 |
| Nominal p-value | 0.832 |
| FDR q-value | 0.9756639 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Pde6g | 778 | 0.612 | 0.0029 | No |
| 2 | Sac3d1 | 2743 | 0.398 | -0.0483 | No |
| 3 | Cda | 3064 | 0.376 | -0.0408 | No |
| 4 | Dguok | 3531 | 0.338 | -0.0405 | No |
| 5 | Ada | 3664 | 0.334 | -0.0282 | No |
| 6 | Tk2 | 3766 | 0.327 | -0.0152 | No |
| 7 | Taf13 | 4049 | 0.307 | -0.0098 | No |
| 8 | Ccno | 4244 | 0.300 | -0.0016 | No |
| 9 | Ak1 | 4733 | 0.280 | -0.0050 | No |
| 10 | Nme3 | 4909 | 0.272 | 0.0025 | No |
| 11 | Poll | 5238 | 0.263 | 0.0039 | No |
| 12 | Srsf6 | 5326 | 0.257 | 0.0139 | No |
| 13 | Nme4 | 5389 | 0.253 | 0.0245 | No |
| 14 | Pde4b | 6697 | 0.211 | -0.0123 | No |
| 15 | Pold1 | 6735 | 0.210 | -0.0029 | No |
| 16 | Adrm1 | 6830 | 0.205 | 0.0041 | No |
| 17 | Gtf3c5 | 7072 | 0.196 | 0.0054 | No |
| 18 | Bcap31 | 7305 | 0.187 | 0.0065 | No |
| 19 | Cant1 | 7363 | 0.185 | 0.0139 | No |
| 20 | Gtf2h1 | 7514 | 0.181 | 0.0176 | No |
| 21 | Taf1c | 7862 | 0.167 | 0.0135 | No |
| 22 | Polr2a | 8078 | 0.160 | 0.0138 | No |
| 23 | Ncbp2 | 8577 | 0.143 | 0.0030 | No |
| 24 | Zwint | 8786 | 0.136 | 0.0024 | No |
| 25 | Aprt | 9140 | 0.125 | -0.0041 | No |
| 26 | Polr1d | 9364 | 0.118 | -0.0061 | No |
| 27 | Itpa | 9458 | 0.115 | -0.0037 | No |
| 28 | Dgcr8 | 9601 | 0.111 | -0.0032 | No |
| 29 | Ercc8 | 9640 | 0.109 | 0.0010 | No |
| 30 | Polr2c | 9678 | 0.109 | 0.0052 | No |
| 31 | Arl6ip1 | 9811 | 0.105 | 0.0058 | No |
| 32 | Xpc | 9966 | 0.101 | 0.0053 | No |
| 33 | Taf12 | 10135 | 0.096 | 0.0041 | No |
| 34 | Gtf2a2 | 10232 | 0.093 | 0.0053 | No |
| 35 | Ssrp1 | 10280 | 0.092 | 0.0083 | No |
| 36 | Snapc4 | 10411 | 0.090 | 0.0082 | No |
| 37 | Ago4 | 10495 | 0.088 | 0.0097 | No |
| 38 | Ddb2 | 10682 | 0.083 | 0.0071 | No |
| 39 | Rfc2 | 10898 | 0.078 | 0.0033 | No |
| 40 | Rad51 | 11018 | 0.074 | 0.0027 | No |
| 41 | Ercc5 | 11190 | 0.070 | 0.0001 | No |
| 42 | Rfc5 | 11210 | 0.070 | 0.0029 | No |
| 43 | Sf3a3 | 11215 | 0.070 | 0.0063 | No |
| 44 | Pom121 | 11240 | 0.069 | 0.0090 | No |
| 45 | Umps | 11356 | 0.066 | 0.0081 | No |
| 46 | Rrm2b | 11385 | 0.065 | 0.0104 | No |
| 47 | Rfc4 | 11677 | 0.057 | 0.0027 | No |
| 48 | Fen1 | 11682 | 0.057 | 0.0055 | No |
| 49 | Lig1 | 11869 | 0.052 | 0.0013 | No |
| 50 | Rev3l | 11980 | 0.049 | -0.0002 | No |
| 51 | Polr2h | 12004 | 0.048 | 0.0014 | No |
| 52 | Tyms | 12037 | 0.047 | 0.0026 | No |
| 53 | Vps37b | 12145 | 0.044 | 0.0010 | No |
| 54 | Polr1c | 12250 | 0.042 | -0.0007 | No |
| 55 | Gtf2b | 12491 | 0.035 | -0.0076 | No |
| 56 | Mpg | 12498 | 0.035 | -0.0060 | No |
| 57 | Nelfb | 12686 | 0.030 | -0.0113 | No |
| 58 | Hcls1 | 12698 | 0.030 | -0.0102 | No |
| 59 | Gmpr2 | 12716 | 0.030 | -0.0093 | No |
| 60 | Rnmt | 12728 | 0.029 | -0.0082 | No |
| 61 | Pola1 | 12744 | 0.029 | -0.0073 | No |
| 62 | Gtf2h3 | 12811 | 0.027 | -0.0083 | No |
| 63 | Aaas | 12823 | 0.027 | -0.0073 | No |
| 64 | Adcy6 | 13109 | 0.020 | -0.0167 | No |
| 65 | Gtf2f1 | 13132 | 0.019 | -0.0165 | No |
| 66 | Polr2g | 13188 | 0.018 | -0.0175 | No |
| 67 | Ak3 | 13349 | 0.015 | -0.0226 | No |
| 68 | Snapc5 | 13418 | 0.013 | -0.0244 | No |
| 69 | Ercc2 | 13574 | 0.012 | -0.0295 | No |
| 70 | Taf9 | 13949 | 0.004 | -0.0429 | No |
| 71 | Ercc3 | 14104 | 0.000 | -0.0485 | No |
| 72 | Nudt9 | 15104 | -0.007 | -0.0845 | No |
| 73 | Alyref | 15246 | -0.010 | -0.0892 | No |
| 74 | Polr3c | 15380 | -0.012 | -0.0934 | No |
| 75 | Supt4a | 15714 | -0.019 | -0.1045 | No |
| 76 | Smad5 | 15922 | -0.025 | -0.1108 | No |
| 77 | Cstf3 | 15949 | -0.026 | -0.1104 | No |
| 78 | Polr2f | 16093 | -0.029 | -0.1141 | No |
| 79 | Polr2d | 16212 | -0.033 | -0.1167 | No |
| 80 | Eif1b | 16539 | -0.041 | -0.1265 | No |
| 81 | Cetn2 | 16568 | -0.041 | -0.1254 | No |
| 82 | Dut | 16576 | -0.042 | -0.1235 | No |
| 83 | Nfx1 | 16623 | -0.043 | -0.1230 | No |
| 84 | Nelfcd | 16690 | -0.045 | -0.1231 | No |
| 85 | Brf2 | 16696 | -0.045 | -0.1210 | No |
| 86 | Pcna | 16700 | -0.045 | -0.1188 | No |
| 87 | Tsg101 | 16920 | -0.050 | -0.1242 | No |
| 88 | Pold4 | 17103 | -0.055 | -0.1280 | No |
| 89 | Polr2e | 17338 | -0.062 | -0.1334 | No |
| 90 | Supt5 | 17411 | -0.064 | -0.1328 | No |
| 91 | Rad52 | 17545 | -0.067 | -0.1342 | No |
| 92 | Nt5c3 | 17604 | -0.067 | -0.1329 | No |
| 93 | Dctn4 | 17704 | -0.069 | -0.1330 | No |
| 94 | Polb | 17733 | -0.070 | -0.1304 | No |
| 95 | Ell | 17780 | -0.071 | -0.1285 | No |
| 96 | Rfc3 | 17854 | -0.073 | -0.1274 | No |
| 97 | Impdh2 | 18214 | -0.082 | -0.1363 | Yes |
| 98 | Sec61a1 | 18257 | -0.083 | -0.1335 | Yes |
| 99 | Surf1 | 18342 | -0.086 | -0.1322 | Yes |
| 100 | Pold3 | 18383 | -0.087 | -0.1293 | Yes |
| 101 | Ercc4 | 18436 | -0.088 | -0.1267 | Yes |
| 102 | Taf10 | 18438 | -0.089 | -0.1222 | Yes |
| 103 | Cox17 | 18603 | -0.092 | -0.1235 | Yes |
| 104 | Rala | 18618 | -0.093 | -0.1192 | Yes |
| 105 | Dad1 | 18751 | -0.096 | -0.1191 | Yes |
| 106 | Pola2 | 18809 | -0.098 | -0.1162 | Yes |
| 107 | Prim1 | 18969 | -0.102 | -0.1168 | Yes |
| 108 | Rae1 | 19026 | -0.104 | -0.1135 | Yes |
| 109 | Sdcbp | 19185 | -0.108 | -0.1138 | Yes |
| 110 | Gtf2h5 | 19401 | -0.115 | -0.1157 | Yes |
| 111 | Nme1 | 19513 | -0.117 | -0.1138 | Yes |
| 112 | Tarbp2 | 19516 | -0.117 | -0.1078 | Yes |
| 113 | Rpa2 | 19801 | -0.125 | -0.1118 | Yes |
| 114 | Guk1 | 20064 | -0.134 | -0.1145 | Yes |
| 115 | Nt5c | 20109 | -0.136 | -0.1091 | Yes |
| 116 | Polh | 20243 | -0.140 | -0.1068 | Yes |
| 117 | Gsdme | 20275 | -0.141 | -0.1008 | Yes |
| 118 | Edf1 | 20544 | -0.149 | -0.1029 | Yes |
| 119 | Pole4 | 20562 | -0.150 | -0.0959 | Yes |
| 120 | Polr3gl | 20723 | -0.155 | -0.0938 | Yes |
| 121 | Pnp | 20731 | -0.156 | -0.0861 | Yes |
| 122 | Trp53 | 20985 | -0.163 | -0.0870 | Yes |
| 123 | Gpx4 | 21072 | -0.166 | -0.0816 | Yes |
| 124 | Rbx1 | 21134 | -0.169 | -0.0752 | Yes |
| 125 | Stx3 | 21250 | -0.172 | -0.0706 | Yes |
| 126 | Mrpl40 | 21288 | -0.174 | -0.0631 | Yes |
| 127 | Ddb1 | 21478 | -0.181 | -0.0608 | Yes |
| 128 | Clp1 | 21531 | -0.182 | -0.0533 | Yes |
| 129 | Polr2j | 21720 | -0.190 | -0.0505 | Yes |
| 130 | Nelfe | 21857 | -0.195 | -0.0455 | Yes |
| 131 | Eloa | 22354 | -0.213 | -0.0526 | Yes |
| 132 | Usp11 | 22569 | -0.221 | -0.0492 | Yes |
| 133 | Mpc2 | 22925 | -0.227 | -0.0505 | Yes |
| 134 | Upf3b | 22961 | -0.229 | -0.0401 | Yes |
| 135 | Vps28 | 23038 | -0.233 | -0.0310 | Yes |
| 136 | Cmpk2 | 23070 | -0.234 | -0.0202 | Yes |
| 137 | Bcam | 23800 | -0.260 | -0.0335 | Yes |
| 138 | Taf6 | 24004 | -0.270 | -0.0271 | Yes |
| 139 | Zfp707 | 24709 | -0.308 | -0.0370 | Yes |
| 140 | Polr2k | 24783 | -0.311 | -0.0238 | Yes |
| 141 | Nudt21 | 25145 | -0.328 | -0.0202 | Yes |
| 142 | Polr2i | 25319 | -0.339 | -0.0091 | Yes |
| 143 | Ercc1 | 25946 | -0.389 | -0.0121 | Yes |
| 144 | Rpa3 | 25971 | -0.391 | 0.0070 | Yes |
| 145 | Polr1h | 26212 | -0.413 | 0.0194 | Yes |
| 146 | Npr2 | 27325 | -0.611 | 0.0101 | Yes |

