DatasetMEP.MEP.ery_Pheno.cls
#Group2_versus_Group3.MEP.ery_Pheno.cls
#Group2_versus_Group3_repos
PhenotypeMEP.ery_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class1
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.49732238
Normalized Enrichment Score (NES)1.9053026
Nominal p-value0.009784736
FDR q-value0.01089949
FWER p-Value0.012
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Srsf11720.7840.0110Yes
2Hspa82530.7250.0241Yes
3Nek23330.6880.0364Yes
4Cdc63530.6800.0507Yes
5Hnrnpu6260.5950.0539Yes
6Ccna26400.5920.0665Yes
7Lmnb18690.5520.0704Yes
8Mcm29630.5360.0788Yes
9Hnrnpd11180.5120.0845Yes
10Nsd211660.5070.0940Yes
11Sap3013460.4930.0984Yes
12Nasp13780.4880.1080Yes
13Ncl14190.4840.1172Yes
14Aurka16750.4500.1178Yes
15Smc1a17650.4440.1244Yes
16Amd119720.4280.1263Yes
17Dr119770.4280.1356Yes
18Xpo119800.4280.1450Yes
19Meis220290.4230.1526Yes
20Cdk121440.4140.1576Yes
21Mcm321730.4110.1656Yes
22Rad2121850.4090.1742Yes
23Mcm522080.4070.1824Yes
24Lbr22280.4060.1907Yes
25Chaf1a23120.4000.1965Yes
26Bub124000.3950.2020Yes
27Kif424020.3950.2107Yes
28Nolc124340.3920.2182Yes
29Mcm624970.3870.2245Yes
30Odc125690.3840.2304Yes
31Mybl226250.3810.2368Yes
32Hmgb326560.3790.2440Yes
33Racgap127310.3740.2496Yes
34Prpf4b28520.3660.2533Yes
35Cdc25a30850.3510.2526Yes
36Ythdc131310.3480.2586Yes
37Cks231370.3470.2661Yes
38Srsf1031460.3470.2734Yes
39Kif2233360.3380.2740Yes
40Kpnb133860.3340.2796Yes
41Prmt535840.3250.2796Yes
42Tent4a36830.3220.2831Yes
43Prc137200.3210.2889Yes
44Upf139770.3070.2863Yes
45Ddx39a40150.3050.2917Yes
46Cdkn2c40390.3030.2975Yes
47Sfpq41220.2990.3011Yes
48Tfdp141580.2980.3064Yes
49Tmpo41640.2970.3128Yes
50Cul4a42680.2920.3155Yes
51Kif2c42980.2910.3208Yes
52Plk443190.2890.3265Yes
53Pbk43210.2890.3328Yes
54Cul143220.2890.3392Yes
55Mki6743460.2880.3447Yes
56Top2a44400.2840.3476Yes
57Kif1144410.2840.3538Yes
58Bard144450.2840.3600Yes
59Polq44880.2810.3647Yes
60Tra2b45100.2800.3701Yes
61Orc546280.2760.3719Yes
62Prim246790.2750.3761Yes
63Cenpe46800.2740.3822Yes
64Suv39h147220.2720.3867Yes
65Fbxo547720.2700.3909Yes
66Tpx247830.2700.3965Yes
67Ttk47940.2690.4020Yes
68Cul350610.2570.3980Yes
69Mad2l150670.2560.4035Yes
70Hus150710.2560.4090Yes
71Top153370.2440.4047Yes
72Wrn54450.2390.4061Yes
73Syncrip54550.2390.4110Yes
74Tacc354900.2370.4150Yes
75Chek155060.2370.4197Yes
76Incenp56110.2330.4210Yes
77E2f456250.2320.4257Yes
78G3bp157490.2290.4263Yes
79Hira57800.2280.4302Yes
80Odf257910.2280.4349Yes
81Pole57980.2270.4397Yes
82Rbl158950.2230.4411Yes
83E2f259990.2210.4422Yes
84E2f160010.2210.4471Yes
85Pola260310.2190.4509Yes
86Numa160410.2190.4554Yes
87Cenpf60420.2190.4602Yes
88Cdc761310.2160.4617Yes
89Kif2361400.2150.4662Yes
90Pafah1b162190.2120.4680Yes
91Hmmr62670.2110.4710Yes
92Cul562770.2110.4753Yes
93Tnpo265610.2010.4694Yes
94Rad54l65990.2000.4725Yes
95H2az166980.1950.4732Yes
96Uck268800.1880.4708Yes
97E2f368950.1880.4744Yes
98Ezh269770.1840.4755Yes
99Tle369830.1840.4794Yes
100Smarcc170420.1810.4812Yes
101Cdkn1b70480.1810.4851Yes
102Casp8ap271530.1770.4852Yes
103Smc272660.1730.4849Yes
104Pml73570.1690.4853Yes
105Ccnf73630.1690.4889Yes
106Ube2s73850.1680.4918Yes
107Brca274390.1660.4936Yes
108Cdc2776050.1640.4912Yes
109Ccnt177140.1600.4908Yes
110Kif1577780.1580.4919Yes
111Kif5b78940.1540.4911Yes
112Plk179670.1510.4918Yes
113Orc680610.1480.4917Yes
114Mtf281280.1450.4925Yes
115Birc582280.1420.4920Yes
116Smc482520.1420.4943Yes
117Gspt182560.1410.4973Yes
118Espl184390.1390.4938No
119Abl186170.1330.4902No
120Ilf386680.1320.4913No
121Rpa287700.1290.4905No
122H2bc1287920.1280.4925No
123Ndc8088680.1260.4926No
124Fancc88720.1250.4952No
125Arid4a89670.1220.4945No
126Exo191950.1150.4888No
127Ctcf92800.1130.4882No
128Dkc192810.1130.4907No
129Stag193590.1100.4903No
130Aurkb98100.0950.4760No
131Dbf498770.0930.4756No
132Snrpd198960.0930.4770No
133Cdc4599370.0920.4776No
134Kmt5a101170.0860.4730No
135Rad23b101240.0860.4746No
136Stmn1101360.0850.4761No
137Atrx102480.0820.4739No
138Cbx1102840.0810.4744No
139Pds5b104560.0760.4698No
140Mapk14105370.0740.4685No
141Hmga1b109550.0600.4547No
142Smad3110600.0570.4521No
143Notch2110990.0560.4520No
144Ss18111720.0530.4505No
145Knl1114870.0440.4400No
146Kif20b116070.0400.4366No
147Slc7a1117060.0370.4338No
148Lig3117750.0350.4321No
149Slc38a1119380.0300.4269No
150Efna5119720.0290.4263No
151Nup98122280.0220.4175No
152Map3k20123210.0180.4145No
153Cks1b124340.0160.4108No
154Stil126140.0110.4045No
155Traip126850.0090.4022No
156Nup5013280-0.0030.3806No
157Gins213566-0.0120.3704No
158Bcl313850-0.0200.3606No
159Rasal214058-0.0260.3536No
160Nusap114385-0.0350.3425No
161Dtymk14428-0.0360.3417No
162Ewsr114638-0.0430.3350No
163Chmp1a14678-0.0440.3346No
164Katna114885-0.0500.3282No
165Atf515065-0.0550.3228No
166Rps6ka515210-0.0590.3189No
167Ccnb215235-0.0590.3193No
168Jpt115713-0.0740.3035No
169Cenpa15878-0.0790.2993No
170Pura16115-0.0870.2926No
171Sqle16459-0.0970.2822No
172Cdk416839-0.1080.2708No
173Srsf217056-0.1150.2654No
174H2az217129-0.1170.2654No
175Cdc2017348-0.1240.2602No
176Hif1a17641-0.1340.2524No
177Slc12a217791-0.1390.2501No
178Mnat118432-0.1580.2302No
179Slc7a518623-0.1640.2269No
180Myc18830-0.1700.2231No
181H2ax19759-0.2010.1937No
182Bub319776-0.2020.1976No
183Troap19989-0.2100.1945No
184Foxn320153-0.2150.1933No
185Ube2c20302-0.2190.1927No
186Cdc25b20336-0.2200.1963No
187Egf21232-0.2540.1693No
188Dmd21701-0.2720.1582No
189Pttg122010-0.2860.1533No
190Ccnd123023-0.3270.1236No
191Marcks24402-0.4010.0822No
192Cdkn325313-0.4580.0591No
193Meis125751-0.4930.0540No
194Tgfb126704-0.6110.0328No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT