Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.ery_Pheno.cls #Group1_versus_Group4.MEP.ery_Pheno.cls #Group1_versus_Group4_repos
Phenotype	MEP.ery_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.28658167
Normalized Enrichment Score (NES)	-1.1757996
Nominal p-value	0.12698413
FDR q-value	0.5246517
FWER p-Value	0.965

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Crlf1	265	0.799	0.0069	No
2	Fstl1	386	0.737	0.0178	No
3	Eno2	691	0.643	0.0201	No
4	Vegfc	725	0.632	0.0320	No
5	Gm21451	760	0.623	0.0437	No
6	Serpine2	782	0.617	0.0557	No
7	Bmp1	967	0.583	0.0611	No
8	Fbln5	989	0.579	0.0723	No
9	Aplp1	1411	0.521	0.0678	No
10	Fbn2	1460	0.516	0.0767	No
11	Efemp2	1654	0.495	0.0800	No
12	Gja1	1784	0.484	0.0853	No
13	Jun	1951	0.467	0.0889	No
14	Mgp	2250	0.436	0.0871	No
15	Fbln2	2256	0.436	0.0960	No
16	Myl9	2644	0.414	0.0904	No
17	Tgm2	2806	0.398	0.0928	No
18	Mfap5	3020	0.386	0.0930	No
19	Gpx7	3183	0.379	0.0950	No
20	Tagln	3453	0.364	0.0927	No
21	Anpep	3596	0.359	0.0950	No
22	Cdh11	3898	0.341	0.0911	No
23	Col8a2	3905	0.340	0.0979	No
24	Areg	4491	0.316	0.0832	No
25	Timp1	4627	0.312	0.0847	No
26	Thy1	4674	0.309	0.0894	No
27	Igfbp2	4812	0.302	0.0907	No
28	P3h1	4879	0.298	0.0945	No
29	Col16a1	4905	0.296	0.0997	No
30	Nid2	4910	0.296	0.1057	No
31	Vcam1	5079	0.289	0.1055	No
32	Calu	5085	0.288	0.1113	No
33	Qsox1	5374	0.278	0.1066	No
34	Itgb1	5842	0.253	0.0948	No
35	Ecm1	5931	0.249	0.0968	No
36	Eln	6030	0.245	0.0983	No
37	Fstl3	6037	0.245	0.1032	No
38	Sparc	6360	0.231	0.0962	No
39	Pdlim4	6395	0.229	0.0997	No
40	Col3a1	6400	0.229	0.1043	No
41	Cthrc1	6426	0.229	0.1082	No
42	Cxcl12	6433	0.229	0.1127	No
43	Mcm7	6796	0.223	0.1042	No
44	Cd44	6977	0.216	0.1021	No
45	Acta2	7646	0.188	0.0816	No
46	Lamc2	8083	0.171	0.0693	No
47	Inhba	8542	0.155	0.0558	No
48	Bdnf	8559	0.155	0.0584	No
49	Serpinh1	8596	0.155	0.0603	No
50	Magee1	8898	0.152	0.0525	No
51	Sgcd	8993	0.149	0.0522	No
52	Fgf2	9540	0.131	0.0350	No
53	Itga5	9604	0.129	0.0354	No
54	Matn3	9645	0.128	0.0366	No
55	Spock1	9647	0.128	0.0392	No
56	Dab2	10044	0.116	0.0272	No
57	Copa	10649	0.095	0.0071	No
58	Prrx1	11060	0.081	-0.0062	No
59	Sgcg	11213	0.075	-0.0101	No
60	Slit3	11244	0.074	-0.0097	No
61	Mylk	11280	0.073	-0.0095	No
62	Tgfbi	11443	0.068	-0.0140	No
63	Pmp22	11490	0.066	-0.0143	No
64	Plod1	11742	0.058	-0.0222	No
65	Comp	12066	0.047	-0.0330	No
66	Notch2	12169	0.044	-0.0358	No
67	Sntb1	12490	0.033	-0.0468	No
68	Oxtr	12662	0.027	-0.0525	No
69	Fbln1	12766	0.024	-0.0557	No
70	Flna	12784	0.023	-0.0559	No
71	Tpm2	12802	0.023	-0.0560	No
72	Col1a1	13759	0.000	-0.0909	No
73	Col6a2	13774	0.000	-0.0914	No
74	Fermt2	14402	-0.008	-0.1141	No
75	Cap2	14651	-0.016	-0.1228	No
76	Lama2	14674	-0.017	-0.1232	No
77	Lama3	14750	-0.020	-0.1256	No
78	Matn2	15022	-0.031	-0.1348	No
79	Vcan	15080	-0.032	-0.1362	No
80	Thbs1	15101	-0.033	-0.1363	No
81	Colgalt1	15203	-0.036	-0.1392	No
82	Tpm4	15257	-0.039	-0.1403	No
83	Mmp14	15277	-0.040	-0.1402	No
84	Col5a1	15593	-0.050	-0.1506	No
85	Vegfa	15648	-0.051	-0.1515	No
86	Loxl1	15653	-0.052	-0.1506	No
87	Lamc1	15953	-0.061	-0.1603	No
88	Gpc1	15995	-0.062	-0.1605	No
89	Bgn	16041	-0.063	-0.1608	No
90	Col12a1	16251	-0.069	-0.1670	No
91	Pcolce2	16496	-0.076	-0.1743	No
92	Wipf1	16521	-0.077	-0.1736	No
93	Fuca1	17042	-0.095	-0.1906	No
94	Slit2	17217	-0.102	-0.1948	No
95	Mmp2	17328	-0.106	-0.1966	No
96	Col6a3	17398	-0.108	-0.1969	No
97	Col11a1	17419	-0.109	-0.1954	No
98	Fzd8	17458	-0.110	-0.1945	No
99	Fbn1	17507	-0.112	-0.1939	No
100	Col1a2	17518	-0.112	-0.1919	No
101	Tfpi2	17738	-0.121	-0.1974	No
102	Dpysl3	18251	-0.134	-0.2133	No
103	Ecm2	18374	-0.138	-0.2149	No
104	Id2	18947	-0.160	-0.2324	No
105	Sat1	19214	-0.170	-0.2386	No
106	Serpine1	19769	-0.193	-0.2548	No
107	Pcolce	19807	-0.194	-0.2521	No
108	Itgav	20142	-0.204	-0.2600	No
109	Timp3	20390	-0.213	-0.2646	No
110	Plod2	20550	-0.220	-0.2659	No
111	Tnfaip3	20902	-0.228	-0.2739	No
112	Itga2	20943	-0.229	-0.2706	No
113	Cadm1	21042	-0.233	-0.2694	No
114	Gadd45b	21103	-0.236	-0.2667	No
115	Nt5e	21391	-0.247	-0.2720	No
116	Sfrp1	21450	-0.249	-0.2690	No
117	Pfn2	21528	-0.253	-0.2665	No
118	Rhob	21572	-0.255	-0.2628	No
119	Col7a1	21828	-0.261	-0.2667	No
120	Sgcb	21853	-0.262	-0.2621	No
121	Tgfbr3	22003	-0.270	-0.2620	No
122	Tnc	22017	-0.270	-0.2568	No
123	Il15	22116	-0.274	-0.2547	No
124	Dst	22991	-0.311	-0.2801	Yes
125	Pmepa1	22996	-0.311	-0.2738	Yes
126	Htra1	23016	-0.311	-0.2681	Yes
127	Thbs2	23060	-0.314	-0.2631	Yes
128	Pdgfrb	23112	-0.314	-0.2585	Yes
129	Plod3	23178	-0.317	-0.2543	Yes
130	Ppib	23376	-0.327	-0.2547	Yes
131	Col4a2	23384	-0.327	-0.2482	Yes
132	Gem	23391	-0.328	-0.2416	Yes
133	Col5a2	23571	-0.337	-0.2411	Yes
134	Gadd45a	23618	-0.339	-0.2358	Yes
135	Abi3bp	23727	-0.345	-0.2325	Yes
136	Ntm	23987	-0.359	-0.2345	Yes
137	Lrp1	24041	-0.362	-0.2290	Yes
138	Col4a1	24043	-0.362	-0.2215	Yes
139	Cxcl5	24338	-0.375	-0.2244	Yes
140	Sdc1	24421	-0.377	-0.2196	Yes
141	Glipr1	24613	-0.390	-0.2185	Yes
142	Lgals1	24627	-0.391	-0.2108	Yes
143	Sdc4	24630	-0.391	-0.2028	Yes
144	Igfbp4	24637	-0.392	-0.1949	Yes
145	Tpm1	24654	-0.393	-0.1873	Yes
146	Lama1	24691	-0.396	-0.1804	Yes
147	Edil3	24924	-0.411	-0.1803	Yes
148	Fn1	25097	-0.418	-0.1779	Yes
149	Slc6a8	25171	-0.423	-0.1718	Yes
150	Basp1	25525	-0.446	-0.1755	Yes
151	Col5a3	25641	-0.453	-0.1703	Yes
152	Tgfb1	25986	-0.486	-0.1727	Yes
153	Adam12	26086	-0.494	-0.1661	Yes
154	Spp1	26283	-0.513	-0.1626	Yes
155	Mest	26284	-0.513	-0.1519	Yes
156	Dcn	26351	-0.520	-0.1436	Yes
157	Pvr	26451	-0.532	-0.1361	Yes
158	Fap	26458	-0.533	-0.1253	Yes
159	Vim	26460	-0.533	-0.1143	Yes
160	Capg	26530	-0.542	-0.1056	Yes
161	Tnfrsf12a	26642	-0.558	-0.0981	Yes
162	Itgb3	26733	-0.572	-0.0895	Yes
163	Sfrp4	26742	-0.573	-0.0779	Yes
164	Plaur	26767	-0.578	-0.0668	Yes
165	Itgb5	26886	-0.600	-0.0586	Yes
166	Il6	26888	-0.600	-0.0462	Yes
167	Cdh6	27110	-0.655	-0.0407	Yes
168	Cdh2	27151	-0.665	-0.0284	Yes
169	Emp3	27188	-0.672	-0.0158	Yes
170	Fas	27259	-0.696	-0.0039	Yes
171	Cald1	27426	-0.788	0.0064	Yes