DatasetMEP.MEP.ery_Pheno.cls
#Group1_versus_Group3.MEP.ery_Pheno.cls
#Group1_versus_Group3_repos
PhenotypeMEP.ery_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.41487822
Normalized Enrichment Score (NES)1.7131746
Nominal p-value0.051587302
FDR q-value0.118712574
FWER p-Value0.183
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Hnrnpd4890.592-0.0021Yes
2Cdc65970.5640.0091Yes
3Rad219030.5080.0115Yes
4Hnrnpu11500.4720.0151Yes
5Nasp14060.4390.0175Yes
6Lmnb114210.4380.0286Yes
7Nsd214320.4360.0399Yes
8Mcm615420.4290.0473Yes
9H2bc1215830.4270.0573Yes
10Mcm216270.4220.0669Yes
11Lbr16640.4190.0768Yes
12Mcm518390.3990.0811Yes
13Mcm318700.3960.0906Yes
14Xpo120460.3840.0944Yes
15Srsf120880.3800.1030Yes
16E2f222590.3690.1067Yes
17Mybl223640.3630.1125Yes
18Nek224340.3590.1196Yes
19Chaf1a24490.3580.1286Yes
20Ythdc126320.3430.1311Yes
21Ube2s26830.3390.1383Yes
22Ncl27210.3360.1459Yes
23Dr128080.3350.1517Yes
24Tfdp129320.3280.1560Yes
25Kpnb129910.3240.1625Yes
26Kif2230060.3240.1706Yes
27Ccna231470.3160.1739Yes
28Cdc25a34740.2960.1699Yes
29Numa135730.2920.1741Yes
30Smad335890.2910.1813Yes
31Smc1a36090.2900.1884Yes
32Odc136930.2850.1929Yes
33Aurka36980.2850.2004Yes
34Srsf1039240.2770.1996Yes
35Sfpq39250.2770.2069Yes
36Rbl139800.2740.2123Yes
37Prpf4b40420.2720.2173Yes
38Bard141380.2670.2209Yes
39Nolc141530.2660.2275Yes
40Tle341760.2650.2338Yes
41Upf141770.2650.2408Yes
42Hspa842110.2640.2467Yes
43Hus143010.2600.2503Yes
44E2f343750.2560.2545Yes
45Cdkn2c44020.2550.2603Yes
46Tnpo246030.2470.2596Yes
47Bub146740.2430.2635Yes
48Tmpo48820.2330.2622Yes
49Abl149440.2300.2661Yes
50Prim251050.2280.2663Yes
51Hmgb351290.2270.2715Yes
52Cdk151460.2260.2770Yes
53Tra2b52420.2240.2795Yes
54Cdc4553340.2200.2820Yes
55Pola253450.2190.2875Yes
56Syncrip53600.2180.2928Yes
57Fbxo553660.2180.2984Yes
58Wrn54280.2160.3019Yes
59Kif454420.2150.3072Yes
60Cul354960.2130.3109Yes
61G3bp156240.2090.3119Yes
62E2f156890.2070.3150Yes
63Incenp57660.2040.3177Yes
64Cul157950.2030.3221Yes
65Tent4a58170.2020.3267Yes
66Smarcc158320.2010.3315Yes
67Cks259110.1980.3340Yes
68Exo160010.1940.3359Yes
69Polq61730.1880.3347Yes
70Amd162000.1870.3387Yes
71Arid4a62500.1850.3418Yes
72Pml63130.1830.3445Yes
73Top2a64750.1770.3433Yes
74Stag165130.1750.3466Yes
75Cul4a65510.1740.3499Yes
76Cul565960.1730.3529Yes
77Ezh266660.1710.3550Yes
78Kif1167740.1670.3555Yes
79Cenpf68750.1640.3562Yes
80Pbk69030.1630.3596Yes
81Ilf369310.1620.3629Yes
82Prc169870.1600.3651Yes
83Kif2c70260.1590.3680Yes
84Cdc770470.1580.3715Yes
85Chek170630.1570.3751Yes
86Suv39h170750.1570.3789Yes
87Hira71080.1560.3819Yes
88Ccnt173860.1530.3758Yes
89Fancc75200.1490.3749Yes
90Rad54l75330.1480.3785Yes
91Cdkn1b75520.1480.3817Yes
92Mki6776580.1440.3818Yes
93Pole76920.1430.3844Yes
94Slc12a279030.1370.3804Yes
95Ewsr179440.1360.3825Yes
96Smc279520.1350.3859Yes
97Rad23b80450.1330.3861Yes
98Orc580460.1330.3896Yes
99Casp8ap280830.1320.3918Yes
100Racgap181910.1290.3914Yes
101Brca282110.1290.3941Yes
102Top183240.1250.3933Yes
103Sap3083980.1230.3940Yes
104Cenpe84410.1210.3956Yes
105Uck284450.1210.3988Yes
106Ttk84530.1200.4017Yes
107Ddx39a84650.1200.4045Yes
108Atrx84830.1200.4071Yes
109Tacc387660.1110.3997Yes
110Mtf288370.1090.4001Yes
111Ss1888770.1080.4016Yes
112Nup9889080.1070.4033Yes
113Cdc2789090.1070.4062Yes
114Plk489770.1050.4065Yes
115E2f489960.1040.4086Yes
116Odf290260.1030.4103Yes
117Pafah1b190360.1030.4127Yes
118Efna590530.1020.4149Yes
119Pds5b91920.0990.4125No
120Espl192690.0970.4123No
121Gspt192740.0970.4147No
122Nup5097850.0810.3983No
123Kif5b98750.0790.3971No
124Lig399340.0770.3971No
125Tpx2100720.0730.3940No
126Ccnf100850.0730.3955No
127Kif15100960.0730.3971No
128Map3k20102640.0680.3928No
129Dtymk103170.0660.3927No
130Ctcf104750.0610.3886No
131Hmmr105580.0590.3872No
132Notch2106000.0580.3872No
133Prmt5107280.0540.3840No
134Rpa2108120.0520.3824No
135Kif23109670.0470.3780No
136Katna1109890.0460.3785No
137Mapk14112960.0370.3683No
138Mad2l1114170.0340.3648No
139Smc4115140.0320.3622No
140Ndc80122780.0130.3347No
141Rasal2123980.0090.3306No
142Stil124940.0060.3273No
143Gins2125390.0050.3258No
144Mnat1126500.0030.3219No
145Srsf213242-0.0030.3004No
146Foxn313351-0.0050.2966No
147Dkc113415-0.0070.2945No
148Traip13526-0.0100.2907No
149Slc38a113761-0.0170.2827No
150Rps6ka513842-0.0200.2803No
151Knl113875-0.0210.2797No
152Kif20b13987-0.0240.2762No
153Aurkb13991-0.0240.2768No
154Orc614116-0.0270.2730No
155Slc7a114214-0.0300.2702No
156Sqle14237-0.0310.2703No
157Hif1a14453-0.0370.2634No
158Dbf414470-0.0370.2638No
159Plk114604-0.0410.2601No
160Egf15177-0.0580.2407No
161Kmt5a15208-0.0590.2412No
162Cbx116046-0.0830.2129No
163Chmp1a16448-0.0940.2008No
164Ccnb216518-0.0960.2008No
165H2az116713-0.1030.1965No
166Bcl316950-0.1100.1908No
167Snrpd117353-0.1200.1793No
168Marcks17388-0.1210.1813No
169Myc17389-0.1210.1845No
170Atf517736-0.1330.1755No
171Meis117863-0.1360.1745No
172Nusap118119-0.1420.1690No
173Stmn118283-0.1470.1669No
174Pura18334-0.1490.1691No
175Bub319317-0.1810.1381No
176Cks1b19699-0.1960.1294No
177Cdc25b19837-0.2010.1298No
178Ccnd120203-0.2130.1221No
179H2ax20884-0.2320.1035No
180Meis221077-0.2390.1028No
181Birc521389-0.2510.0982No
182Cdk421496-0.2560.1011No
183Slc7a521912-0.2670.0931No
184Jpt121945-0.2690.0991No
185Cdc2022524-0.2930.0858No
186H2az222886-0.3050.0808No
187Troap22944-0.3090.0870No
188Cenpa23107-0.3150.0894No
189Pttg123140-0.3170.0967No
190Dmd23483-0.3330.0931No
191Ube2c23729-0.3440.0934No
192Tgfb125418-0.4400.0435No
193Hmga1b26935-0.6260.0049No
194Cdkn327292-0.7290.0113No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT