Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.ery_Pheno.cls #Group1_versus_Group3.MEP.ery_Pheno.cls #Group1_versus_Group3_repos
Phenotype	MEP.ery_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.26802778
Normalized Enrichment Score (NES)	-1.1322309
Nominal p-value	0.11881188
FDR q-value	0.5643494
FWER p-Value	0.969

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Prrx1	162	0.772	0.0114	No
2	Eln	163	0.772	0.0288	No
3	Fbln1	218	0.728	0.0432	No
4	Col12a1	247	0.709	0.0581	No
5	Jun	529	0.586	0.0610	No
6	Bmp1	897	0.509	0.0591	No
7	Lama3	1055	0.486	0.0643	No
8	Itga2	1164	0.470	0.0709	No
9	Fgf2	1212	0.464	0.0796	No
10	Matn3	1359	0.445	0.0843	No
11	Col8a2	1764	0.407	0.0787	No
12	Vegfc	2514	0.353	0.0593	No
13	Pmp22	2780	0.335	0.0572	No
14	Tgm2	2809	0.335	0.0637	No
15	Mcm7	2877	0.331	0.0687	No
16	Abi3bp	2961	0.326	0.0730	No
17	Pfn2	2982	0.325	0.0796	No
18	Crlf1	3027	0.322	0.0852	No
19	Col16a1	3117	0.318	0.0891	No
20	Adam12	3176	0.313	0.0941	No
21	Nid2	3252	0.310	0.0983	No
22	Cdh2	3311	0.306	0.1030	No
23	Areg	3337	0.305	0.1090	No
24	Itgb1	3982	0.274	0.0917	No
25	Thy1	4225	0.263	0.0888	No
26	Vcan	4327	0.258	0.0909	No
27	Anpep	4334	0.258	0.0964	No
28	Igfbp2	4437	0.253	0.0984	No
29	Col5a2	4728	0.240	0.0932	No
30	Magee1	4778	0.238	0.0968	No
31	Ecm2	4793	0.238	0.1016	No
32	Cthrc1	4990	0.229	0.0996	No
33	Edil3	5441	0.215	0.0881	No
34	Sfrp1	5525	0.212	0.0898	No
35	Tagln	5740	0.205	0.0866	No
36	Thbs1	5967	0.196	0.0828	No
37	Copa	6146	0.189	0.0805	No
38	Timp1	6575	0.174	0.0688	No
39	Fstl3	6662	0.171	0.0695	No
40	Serpinh1	7183	0.155	0.0541	No
41	Timp3	7361	0.154	0.0511	No
42	Col11a1	7676	0.144	0.0429	No
43	Lamc2	7707	0.143	0.0450	No
44	Sgcd	7729	0.142	0.0474	No
45	Cdh11	8198	0.129	0.0332	No
46	Oxtr	8651	0.114	0.0193	No
47	Mmp2	8659	0.114	0.0216	No
48	P3h1	8756	0.111	0.0206	No
49	Gem	8997	0.104	0.0142	No
50	Fbln5	9262	0.097	0.0068	No
51	Fermt2	9265	0.097	0.0089	No
52	Mest	9298	0.096	0.0099	No
53	Slit2	9751	0.082	-0.0048	No
54	Eno2	9826	0.080	-0.0057	No
55	Col7a1	10144	0.071	-0.0156	No
56	Calu	10145	0.071	-0.0140	No
57	Mfap5	10296	0.067	-0.0180	No
58	Pmepa1	10329	0.066	-0.0177	No
59	Pdgfrb	10472	0.061	-0.0215	No
60	Mgp	10539	0.060	-0.0226	No
61	Notch2	10600	0.058	-0.0235	No
62	Vcam1	10636	0.057	-0.0235	No
63	Spock1	10674	0.056	-0.0236	No
64	Fbln2	10843	0.050	-0.0285	No
65	Sat1	11250	0.039	-0.0425	No
66	Comp	11252	0.039	-0.0416	No
67	Gja1	11268	0.038	-0.0413	No
68	Sgcg	11351	0.036	-0.0435	No
69	Spp1	11559	0.031	-0.0504	No
70	Tnfaip3	11571	0.030	-0.0501	No
71	Col3a1	11705	0.027	-0.0543	No
72	Slit3	11765	0.026	-0.0559	No
73	Mylk	12463	0.007	-0.0811	No
74	Aplp1	12706	0.002	-0.0899	No
75	Fzd8	13639	-0.014	-0.1236	No
76	Pcolce	13748	-0.017	-0.1271	No
77	Itga5	13771	-0.018	-0.1275	No
78	Dst	13956	-0.023	-0.1337	No
79	Id2	14080	-0.026	-0.1376	No
80	Cap2	14185	-0.029	-0.1407	No
81	Cd44	14507	-0.039	-0.1516	No
82	Matn2	14615	-0.042	-0.1545	No
83	Tgfbi	14662	-0.043	-0.1553	No
84	Plod1	14873	-0.049	-0.1618	No
85	Flna	15182	-0.058	-0.1717	No
86	Myl9	15229	-0.060	-0.1721	No
87	Qsox1	15526	-0.069	-0.1813	No
88	Gadd45a	15565	-0.070	-0.1811	No
89	Pdlim4	15751	-0.075	-0.1862	No
90	Fstl1	15992	-0.082	-0.1931	No
91	Col6a3	16140	-0.085	-0.1965	No
92	Dab2	16600	-0.099	-0.2110	No
93	Serpine2	16848	-0.107	-0.2177	No
94	Acta2	17014	-0.112	-0.2212	No
95	Rhob	17513	-0.125	-0.2365	No
96	Vegfa	17668	-0.130	-0.2392	No
97	Sdc1	17790	-0.134	-0.2406	No
98	Wipf1	17843	-0.136	-0.2394	No
99	Plod2	17881	-0.137	-0.2377	No
100	Fbn1	17917	-0.138	-0.2359	No
101	Loxl1	17983	-0.140	-0.2351	No
102	Cxcl12	18392	-0.150	-0.2466	No
103	Efemp2	18403	-0.151	-0.2436	No
104	Dpysl3	18441	-0.152	-0.2415	No
105	Sparc	18822	-0.165	-0.2517	No
106	Ecm1	19167	-0.176	-0.2603	No
107	Tpm4	19381	-0.184	-0.2639	Yes
108	Col1a2	19461	-0.187	-0.2626	Yes
109	Pcolce2	19464	-0.187	-0.2584	Yes
110	Fbn2	19503	-0.188	-0.2556	Yes
111	Gm21451	19560	-0.191	-0.2534	Yes
112	Slc6a8	19652	-0.194	-0.2523	Yes
113	Ntm	19707	-0.196	-0.2499	Yes
114	Il15	19786	-0.199	-0.2483	Yes
115	Igfbp4	19889	-0.203	-0.2474	Yes
116	Col4a1	20068	-0.208	-0.2492	Yes
117	Tnc	20137	-0.211	-0.2470	Yes
118	Serpine1	20402	-0.216	-0.2517	Yes
119	Fn1	20481	-0.219	-0.2497	Yes
120	Colgalt1	20578	-0.223	-0.2481	Yes
121	Pvr	20584	-0.223	-0.2433	Yes
122	Itgav	20625	-0.225	-0.2397	Yes
123	Cadm1	20630	-0.225	-0.2348	Yes
124	Col6a2	20689	-0.227	-0.2318	Yes
125	Gpx7	20800	-0.228	-0.2307	Yes
126	Gpc1	20859	-0.231	-0.2276	Yes
127	Col5a3	20961	-0.234	-0.2261	Yes
128	Sgcb	21051	-0.238	-0.2240	Yes
129	Col5a1	21286	-0.247	-0.2269	Yes
130	Sdc4	21297	-0.248	-0.2217	Yes
131	Fap	21507	-0.256	-0.2236	Yes
132	Htra1	21576	-0.259	-0.2203	Yes
133	Cxcl5	21801	-0.265	-0.2225	Yes
134	Tgfbr3	22052	-0.273	-0.2254	Yes
135	Fuca1	22060	-0.273	-0.2196	Yes
136	Plod3	22134	-0.277	-0.2160	Yes
137	Thbs2	22248	-0.282	-0.2138	Yes
138	Mmp14	23147	-0.317	-0.2394	Yes
139	Bdnf	23632	-0.339	-0.2494	Yes
140	Gadd45b	23655	-0.340	-0.2426	Yes
141	Bgn	23666	-0.340	-0.2353	Yes
142	Plaur	23748	-0.345	-0.2305	Yes
143	Vim	23960	-0.358	-0.2301	Yes
144	Lamc1	24128	-0.368	-0.2280	Yes
145	Col4a2	24159	-0.370	-0.2207	Yes
146	Tpm1	24357	-0.382	-0.2193	Yes
147	Cdh6	24674	-0.397	-0.2219	Yes
148	Lama2	24743	-0.403	-0.2154	Yes
149	Col1a1	25171	-0.424	-0.2214	Yes
150	Basp1	25183	-0.424	-0.2123	Yes
151	Tpm2	25374	-0.436	-0.2094	Yes
152	Tgfb1	25418	-0.440	-0.2011	Yes
153	Ppib	25795	-0.470	-0.2043	Yes
154	Itgb5	26037	-0.492	-0.2020	Yes
155	Lrp1	26075	-0.497	-0.1922	Yes
156	Tnfrsf12a	26227	-0.515	-0.1861	Yes
157	Cald1	26404	-0.539	-0.1804	Yes
158	Il6	26547	-0.562	-0.1730	Yes
159	Sfrp4	26673	-0.582	-0.1644	Yes
160	Lama1	26779	-0.601	-0.1548	Yes
161	Fas	26888	-0.621	-0.1447	Yes
162	Capg	26981	-0.634	-0.1338	Yes
163	Inhba	27090	-0.665	-0.1228	Yes
164	Nt5e	27140	-0.679	-0.1094	Yes
165	Sntb1	27186	-0.692	-0.0955	Yes
166	Emp3	27314	-0.740	-0.0835	Yes
167	Lgals1	27354	-0.763	-0.0678	Yes
168	Tfpi2	27417	-0.805	-0.0519	Yes
169	Itgb3	27419	-0.806	-0.0339	Yes
170	Dcn	27445	-0.833	-0.0161	Yes
171	Glipr1	27548	-0.968	0.0020	Yes