Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group3_versus_Group4.HSC_Pheno.cls#Group3_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	-0.18423809
Normalized Enrichment Score (NES)	-0.88352853
Nominal p-value	0.74404764
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Smad3	85	0.879	0.0175	No
2	Ccnd1	158	0.770	0.0330	No
3	Ifngr2	189	0.740	0.0511	No
4	Dusp4	240	0.708	0.0667	No
5	Gadd45b	302	0.672	0.0804	No
6	Myc	435	0.615	0.0867	No
7	Yrdc	808	0.520	0.0707	No
8	Dram1	902	0.502	0.0771	No
9	Tank	1186	0.456	0.0666	No
10	Btg3	1284	0.443	0.0710	No
11	Nr4a2	1351	0.434	0.0776	No
12	Clcf1	1408	0.426	0.0849	No
13	Litaf	1430	0.421	0.0949	No
14	Fut4	1485	0.416	0.1020	No
15	Dusp2	1513	0.413	0.1113	No
16	Nr4a1	1525	0.411	0.1218	No
17	Cflar	1792	0.377	0.1105	No
18	B4galt5	1826	0.374	0.1182	No
19	Ldlr	2151	0.336	0.1010	No
20	Tlr2	2316	0.319	0.0965	No
21	Ier5	2322	0.319	0.1049	No
22	Rel	2332	0.319	0.1131	No
23	Egr1	2365	0.315	0.1192	No
24	Zc3h12a	2371	0.315	0.1276	No
25	Il18	2425	0.308	0.1318	No
26	Ier3	2453	0.305	0.1381	No
27	Snn	2553	0.297	0.1382	No
28	Ehd1	2564	0.297	0.1457	No
29	Dusp5	2727	0.286	0.1404	No
30	Cebpd	2772	0.282	0.1446	No
31	Atp2b1	2833	0.277	0.1474	No
32	Pfkfb3	2957	0.265	0.1447	No
33	Ptpre	3086	0.257	0.1414	No
34	Nfkb2	3318	0.236	0.1290	No
35	Gch1	3346	0.234	0.1333	No
36	Kynu	3572	0.215	0.1209	No
37	Klf4	3635	0.209	0.1216	No
38	Trib1	3649	0.209	0.1263	No
39	Serpinb8	3813	0.198	0.1185	No
40	Map3k8	4003	0.185	0.1082	No
41	Nfkb1	4040	0.182	0.1103	No
42	Zbtb10	4132	0.175	0.1077	No
43	Plek	4241	0.166	0.1035	No
44	Lamb3	4457	0.150	0.0901	No
45	B4galt1	4495	0.147	0.0911	No
46	Fosb	4499	0.147	0.0950	No
47	Fosl2	4556	0.143	0.0944	No
48	Dennd5a	4628	0.138	0.0924	No
49	Dusp1	4677	0.134	0.0922	No
50	Tnip1	5158	0.102	0.0558	No
51	Abca1	5193	0.099	0.0557	No
52	Ccnl1	5253	0.095	0.0536	No
53	Nfe2l2	5277	0.093	0.0542	No
54	Gpr183	5519	0.076	0.0367	No
55	Rcan1	5547	0.075	0.0365	No
56	Ripk2	5740	0.060	0.0225	No
57	Ninj1	5835	0.052	0.0163	No
58	Gem	5849	0.051	0.0166	No
59	Eif1	5886	0.049	0.0150	No
60	Relb	5906	0.048	0.0148	No
61	Sdc4	5934	0.046	0.0139	No
62	Socs3	6693	0.000	-0.0481	No
63	Slc16a6	6865	-0.008	-0.0619	No
64	Irs2	7058	-0.022	-0.0769	No
65	Trip10	7129	-0.027	-0.0819	No
66	Plaur	7138	-0.027	-0.0818	No
67	Ifih1	7178	-0.029	-0.0842	No
68	Tiparp	7230	-0.033	-0.0874	No
69	Tnfaip3	7275	-0.038	-0.0900	No
70	Efna1	7353	-0.042	-0.0951	No
71	Ifit2	7381	-0.045	-0.0961	No
72	Marcks	7635	-0.062	-0.1151	No
73	Il6st	7652	-0.064	-0.1146	No
74	Gfpt2	7714	-0.068	-0.1177	No
75	Tap1	7723	-0.069	-0.1164	No
76	Icosl	7811	-0.076	-0.1214	No
77	Tnip2	7837	-0.077	-0.1213	No
78	Klf2	7955	-0.087	-0.1285	No
79	Tnfaip2	8032	-0.094	-0.1321	No
80	Sod2	8052	-0.096	-0.1310	No
81	Stat5a	8120	-0.100	-0.1337	No
82	Ppp1r15a	8160	-0.103	-0.1340	No
83	Kdm6b	8209	-0.107	-0.1350	No
84	Nfat5	8343	-0.117	-0.1426	No
85	Sqstm1	8384	-0.121	-0.1425	No
86	Klf6	8389	-0.122	-0.1394	No
87	Bcl6	8401	-0.122	-0.1369	No
88	Rigi	8473	-0.128	-0.1392	No
89	Tgif1	8507	-0.130	-0.1383	No
90	Zfp36	8620	-0.140	-0.1435	No
91	Map2k3	8784	-0.156	-0.1525	No
92	Rela	8791	-0.157	-0.1487	No
93	Nampt	8971	-0.169	-0.1586	No
94	Birc3	9072	-0.176	-0.1619	No
95	Ets2	9089	-0.178	-0.1582	No
96	Pde4b	9099	-0.179	-0.1540	No
97	Btg1	9195	-0.188	-0.1565	No
98	Jag1	9210	-0.188	-0.1525	No
99	Nfkbie	9411	-0.204	-0.1631	No
100	Pdlim5	9413	-0.204	-0.1575	No
101	Mcl1	9437	-0.206	-0.1537	No
102	Inhba	9444	-0.206	-0.1485	No
103	Slc2a3	9579	-0.221	-0.1533	No
104	Icam1	9725	-0.232	-0.1587	No
105	Mxd1	9859	-0.246	-0.1628	No
106	Panx1	9927	-0.253	-0.1612	No
107	Ccrl2	9972	-0.258	-0.1576	No
108	Il15ra	10216	-0.279	-0.1698	No
109	Plpp3	10394	-0.296	-0.1760	Yes
110	Pmepa1	10399	-0.297	-0.1681	Yes
111	Ier2	10569	-0.318	-0.1731	Yes
112	Fos	10616	-0.322	-0.1679	Yes
113	Tsc22d1	10629	-0.324	-0.1599	Yes
114	Dnajb4	10637	-0.325	-0.1514	Yes
115	Jun	10678	-0.331	-0.1455	Yes
116	Bcl3	10708	-0.335	-0.1386	Yes
117	Birc2	10710	-0.335	-0.1293	Yes
118	Bhlhe40	10738	-0.339	-0.1221	Yes
119	Traf1	10753	-0.342	-0.1138	Yes
120	Plk2	10803	-0.349	-0.1081	Yes
121	Rnf19b	10891	-0.360	-0.1052	Yes
122	Maff	11079	-0.388	-0.1097	Yes
123	Hbegf	11120	-0.393	-0.1021	Yes
124	Pnrc1	11210	-0.403	-0.0981	Yes
125	Sat1	11297	-0.417	-0.0936	Yes
126	Vegfa	11309	-0.419	-0.0829	Yes
127	Nfkbia	11343	-0.424	-0.0738	Yes
128	Klf10	11444	-0.439	-0.0698	Yes
129	Tnfaip8	11458	-0.442	-0.0585	Yes
130	Csf1	11473	-0.446	-0.0473	Yes
131	Junb	11589	-0.467	-0.0437	Yes
132	Per1	11759	-0.508	-0.0434	Yes
133	Cd44	11804	-0.524	-0.0324	Yes
134	Klf9	12056	-0.611	-0.0360	Yes
135	Ptger4	12110	-0.640	-0.0225	Yes
136	Irf1	12198	-0.709	-0.0100	Yes
137	Rhob	12288	-0.841	0.0061	Yes