Details for gene set HALLMARK_TGF_BETA

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group3_versus_Group4.HSC_Pheno.cls#Group3_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)	0.40625772
Normalized Enrichment Score (NES)	1.5935372
Nominal p-value	0.014
FDR q-value	0.15580703
FWER p-Value	0.13

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Smad3	85	0.879	0.0523	Yes
2	Slc20a1	138	0.790	0.1013	Yes
3	Ifngr2	189	0.740	0.1471	Yes
4	Hdac1	190	0.740	0.1969	Yes
5	Tgfb1	215	0.719	0.2434	Yes
6	Furin	301	0.673	0.2818	Yes
7	Ski	415	0.625	0.3147	Yes
8	Rhoa	437	0.615	0.3543	Yes
9	Ctnnb1	697	0.545	0.3700	Yes
10	Cdk9	702	0.543	0.4063	Yes
11	Smad6	1627	0.399	0.3581	No
12	Ppp1ca	2484	0.305	0.3091	No
13	Bcar3	2513	0.302	0.3272	No
14	Trim33	2753	0.283	0.3269	No
15	Tgfbr1	2952	0.265	0.3287	No
16	Map3k7	4722	0.132	0.1939	No
17	Rab31	4851	0.123	0.1918	No
18	Fkbp1a	5248	0.095	0.1661	No
19	Smad7	5819	0.054	0.1234	No
20	Acvr1	5847	0.051	0.1247	No
21	Tjp1	6056	0.040	0.1105	No
22	Ube2d3	6576	0.005	0.0687	No
23	Sptbn1	6992	-0.018	0.0362	No
24	Ppm1a	7024	-0.020	0.0351	No
25	Eng	7661	-0.064	-0.0122	No
26	Ncor2	7943	-0.086	-0.0292	No
27	Ppp1r15a	8160	-0.103	-0.0398	No
28	Arid4b	8458	-0.127	-0.0554	No
29	Tgif1	8507	-0.130	-0.0505	No
30	Apc	8510	-0.131	-0.0419	No
31	Smurf2	8573	-0.135	-0.0378	No
32	Fnta	9142	-0.183	-0.0716	No
33	Xiap	9487	-0.212	-0.0853	No
34	Bmpr1a	9737	-0.233	-0.0898	No
35	Smad1	9836	-0.243	-0.0814	No
36	Pmepa1	10399	-0.297	-0.1070	No
37	Cdkn1c	10802	-0.349	-0.1162	No
38	Skil	10937	-0.365	-0.1025	No
39	Smurf1	11391	-0.429	-0.1103	No
40	Klf10	11444	-0.439	-0.0850	No
41	Bmpr2	11512	-0.453	-0.0599	No
42	Wwtr1	11569	-0.463	-0.0333	No
43	Junb	11589	-0.467	-0.0034	No
44	Hipk2	11629	-0.478	0.0256	No
45	Thbs1	11746	-0.504	0.0501	No