Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group3_versus_Group4.HSC_Pheno.cls#Group3_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	-0.24812317
Normalized Enrichment Score (NES)	-1.1272599
Nominal p-value	0.22770399
FDR q-value	0.79252565
FWER p-Value	0.984

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Pgm2	273	0.688	-0.0003	No
2	Slc25a1	371	0.646	0.0125	No
3	Kif5a	492	0.598	0.0218	No
4	Ccng2	747	0.534	0.0182	No
5	Myh9	948	0.494	0.0176	No
6	Gcnt2	1032	0.480	0.0262	No
7	Mxi1	1047	0.476	0.0404	No
8	Aldoc	1179	0.456	0.0443	No
9	Hspa5	1227	0.450	0.0548	No
10	Bcl2	1264	0.445	0.0661	No
11	Tpd52	1429	0.422	0.0662	No
12	Cxcr4	1579	0.404	0.0670	No
13	Gpc3	1612	0.401	0.0772	No
14	Mt1	2003	0.351	0.0566	No
15	Anxa2	2005	0.351	0.0677	No
16	Zfp292	2397	0.311	0.0457	No
17	Ier3	2453	0.305	0.0510	No
18	Cdkn1b	2518	0.301	0.0554	No
19	Gaa	2663	0.289	0.0529	No
20	Hs3st1	2675	0.288	0.0612	No
21	Ndrg1	2885	0.273	0.0529	No
22	Pfkfb3	2957	0.265	0.0555	No
23	Slc2a1	3167	0.250	0.0464	No
24	Klf7	3217	0.245	0.0503	No
25	Scarb1	3237	0.243	0.0565	No
26	Ddit4	3381	0.232	0.0523	No
27	Casp6	3859	0.195	0.0195	No
28	Plac8	3919	0.190	0.0207	No
29	Pgm1	3970	0.187	0.0226	No
30	Glrx	4166	0.172	0.0122	No
31	Nedd4l	4203	0.170	0.0147	No
32	Slc6a6	4265	0.164	0.0150	No
33	Sap30	4280	0.163	0.0191	No
34	Sdc2	4311	0.161	0.0217	No
35	Hk2	4427	0.152	0.0172	No
36	Fosl2	4556	0.143	0.0113	No
37	Xpnpep1	4594	0.142	0.0128	No
38	Dusp1	4677	0.134	0.0104	No
39	Vldlr	4814	0.125	0.0033	No
40	Pklr	4834	0.124	0.0057	No
41	Isg20	5017	0.112	-0.0056	No
42	Gys1	5170	0.101	-0.0148	No
43	Ampd3	5243	0.095	-0.0176	No
44	Pdgfb	5325	0.089	-0.0213	No
45	Klhl24	5364	0.087	-0.0217	No
46	P4ha1	5379	0.085	-0.0201	No
47	Pfkl	5458	0.080	-0.0239	No
48	Galk1	5723	0.061	-0.0435	No
49	Selenbp1	5773	0.058	-0.0457	No
50	Ero1a	5830	0.053	-0.0486	No
51	Cited2	5845	0.052	-0.0481	No
52	Eno2	5861	0.051	-0.0477	No
53	Noct	5862	0.051	-0.0461	No
54	Map3k1	5878	0.050	-0.0457	No
55	Sdc4	5934	0.046	-0.0487	No
56	Sdc3	6055	0.041	-0.0573	No
57	Ids	6078	0.039	-0.0578	No
58	Pfkp	6168	0.033	-0.0640	No
59	Pam	6209	0.030	-0.0663	No
60	Nagk	6360	0.018	-0.0780	No
61	Aldoa	6445	0.012	-0.0845	No
62	Phkg1	6551	0.006	-0.0929	No
63	Ndst1	6752	-0.000	-0.1092	No
64	Sult2b1	6780	-0.002	-0.1114	No
65	Tpst2	6829	-0.006	-0.1151	No
66	Gpi1	6925	-0.013	-0.1224	No
67	Pdk1	6961	-0.015	-0.1248	No
68	Bnip3l	6964	-0.016	-0.1245	No
69	Cavin1	6965	-0.016	-0.1240	No
70	Irs2	7058	-0.022	-0.1308	No
71	Bgn	7126	-0.027	-0.1354	No
72	Plaur	7138	-0.027	-0.1354	No
73	Csrp2	7205	-0.031	-0.1398	No
74	Fam162a	7225	-0.033	-0.1403	No
75	Tiparp	7230	-0.033	-0.1396	No
76	Tnfaip3	7275	-0.038	-0.1420	No
77	Efna1	7353	-0.042	-0.1469	No
78	Ets1	7434	-0.049	-0.1519	No
79	Nr3c1	7626	-0.061	-0.1656	No
80	Tpi1	8085	-0.098	-0.1999	No
81	Tgfb3	8105	-0.099	-0.1983	No
82	Pygm	8154	-0.103	-0.1989	No
83	Ppp1r15a	8160	-0.103	-0.1960	No
84	Prkca	8177	-0.105	-0.1940	No
85	Klf6	8389	-0.122	-0.2073	No
86	Ext1	8481	-0.129	-0.2107	No
87	Zfp36	8620	-0.140	-0.2175	No
88	Lxn	8641	-0.141	-0.2146	No
89	Foxo3	8682	-0.145	-0.2132	No
90	Mif	8782	-0.155	-0.2163	No
91	Ndst2	8833	-0.160	-0.2153	No
92	Prdx5	8922	-0.166	-0.2172	No
93	Jmjd6	9118	-0.181	-0.2273	No
94	Btg1	9195	-0.188	-0.2275	No
95	Inha	9215	-0.188	-0.2230	No
96	Ak4	9291	-0.193	-0.2230	No
97	Atp7a	9331	-0.196	-0.2199	No
98	Siah2	9365	-0.199	-0.2162	No
99	Rbpj	9513	-0.215	-0.2213	No
100	Slc2a3	9579	-0.221	-0.2196	No
101	Chst2	9584	-0.221	-0.2128	No
102	Ldha	9777	-0.236	-0.2209	No
103	Eno3	9975	-0.258	-0.2288	No
104	Gbe1	9986	-0.258	-0.2214	No
105	Tes	10099	-0.267	-0.2220	No
106	Hk1	10420	-0.299	-0.2385	Yes
107	Kdm3a	10447	-0.302	-0.2310	Yes
108	Ppargc1a	10471	-0.305	-0.2231	Yes
109	Ugp2	10538	-0.315	-0.2184	Yes
110	Fos	10616	-0.322	-0.2144	Yes
111	Jun	10678	-0.331	-0.2088	Yes
112	Bhlhe40	10738	-0.339	-0.2027	Yes
113	Cdkn1c	10802	-0.349	-0.1967	Yes
114	Tgfbi	10855	-0.356	-0.1896	Yes
115	Plin2	10881	-0.358	-0.1801	Yes
116	Grhpr	10948	-0.368	-0.1737	Yes
117	Hexa	11022	-0.380	-0.1675	Yes
118	Hdlbp	11024	-0.380	-0.1555	Yes
119	Large1	11064	-0.386	-0.1463	Yes
120	Gpc1	11077	-0.388	-0.1348	Yes
121	Maff	11079	-0.388	-0.1225	Yes
122	Vhl	11107	-0.391	-0.1122	Yes
123	Hoxb9	11145	-0.393	-0.1026	Yes
124	Pnrc1	11210	-0.403	-0.0949	Yes
125	Dtna	11254	-0.410	-0.0853	Yes
126	Pdk3	11260	-0.411	-0.0726	Yes
127	Vegfa	11309	-0.419	-0.0631	Yes
128	Wsb1	11500	-0.452	-0.0641	Yes
129	Ddit3	11617	-0.474	-0.0584	Yes
130	Ankzf1	11668	-0.485	-0.0470	Yes
131	Ilvbl	11684	-0.489	-0.0325	Yes
132	Pim1	11735	-0.501	-0.0206	Yes
133	Pgk1	12042	-0.605	-0.0262	Yes
134	Tgm2	12135	-0.657	-0.0127	Yes
135	Rora	12334	-0.976	0.0024	Yes