Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group3_versus_Group4.HSC_Pheno.cls#Group3_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.28911728
Normalized Enrichment Score (NES)	-1.2126813
Nominal p-value	0.13690476
FDR q-value	0.73763174
FWER p-Value	0.921

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tgfb1	215	0.719	0.0157	No
2	Gadd45b	302	0.672	0.0398	No
3	Lama3	711	0.540	0.0316	No
4	Timp3	956	0.493	0.0345	No
5	Lrp1	1095	0.469	0.0449	No
6	Tpm4	1218	0.451	0.0559	No
7	Pvr	1278	0.443	0.0715	No
8	Ecm1	1495	0.415	0.0731	No
9	Lamc1	2271	0.324	0.0250	No
10	Anpep	2409	0.310	0.0281	No
11	Lgals1	2714	0.286	0.0166	No
12	Fzd8	2844	0.276	0.0189	No
13	P3h1	2907	0.270	0.0263	No
14	Sgcb	2921	0.269	0.0377	No
15	Mmp2	2953	0.265	0.0474	No
16	Cap2	2984	0.263	0.0571	No
17	Tgfbr3	3096	0.256	0.0599	No
18	Serpinh1	3273	0.240	0.0567	No
19	Glipr1	3299	0.237	0.0656	No
20	Col4a1	3490	0.223	0.0605	No
21	Dst	3553	0.217	0.0654	No
22	Col1a2	3945	0.189	0.0423	No
23	Copa	4095	0.176	0.0383	No
24	Sntb1	4103	0.176	0.0459	No
25	Qsox1	4299	0.161	0.0375	No
26	Itga2	4496	0.147	0.0283	No
27	Pdgfrb	4627	0.138	0.0241	No
28	Slit2	4847	0.123	0.0120	No
29	Vim	5016	0.112	0.0034	No
30	Sfrp1	5367	0.086	-0.0211	No
31	Plod3	5412	0.083	-0.0208	No
32	Fuca1	5767	0.058	-0.0470	No
33	Gem	5849	0.051	-0.0512	No
34	Eno2	5861	0.051	-0.0498	No
35	Sdc4	5934	0.046	-0.0535	No
36	Plod1	5977	0.044	-0.0549	No
37	Il15	6010	0.042	-0.0556	No
38	Tpm1	6119	0.036	-0.0627	No
39	Col4a2	6287	0.023	-0.0753	No
40	Vcan	6549	0.006	-0.0962	No
41	Magee1	6660	0.000	-0.1052	No
42	Abi3bp	6669	0.000	-0.1059	No
43	Basp1	6922	-0.013	-0.1258	No
44	Vegfc	6945	-0.014	-0.1269	No
45	Cadm1	7118	-0.027	-0.1397	No
46	Bgn	7126	-0.027	-0.1390	No
47	Tpm2	7133	-0.027	-0.1382	No
48	Plaur	7138	-0.027	-0.1373	No
49	Gja1	7188	-0.029	-0.1399	No
50	Flna	7255	-0.036	-0.1436	No
51	Tnfaip3	7275	-0.038	-0.1435	No
52	Ecm2	7298	-0.039	-0.1434	No
53	Emp3	7328	-0.040	-0.1439	No
54	Mmp14	7448	-0.050	-0.1513	No
55	Bmp1	7869	-0.080	-0.1818	No
56	Mcm7	8166	-0.104	-0.2011	No
57	Itgb3	8199	-0.106	-0.1988	No
58	Colgalt1	8437	-0.125	-0.2123	No
59	Itgav	8461	-0.127	-0.2083	No
60	Itga5	8794	-0.157	-0.2281	No
61	Inhba	9444	-0.206	-0.2714	No
62	Col16a1	9662	-0.226	-0.2786	Yes
63	Ppib	9677	-0.228	-0.2693	Yes
64	Mylk	9794	-0.238	-0.2677	Yes
65	Itgb1	9942	-0.255	-0.2679	Yes
66	Igfbp4	9948	-0.256	-0.2565	Yes
67	Calu	10103	-0.267	-0.2567	Yes
68	Pmepa1	10399	-0.297	-0.2670	Yes
69	Notch2	10528	-0.314	-0.2629	Yes
70	Jun	10678	-0.331	-0.2597	Yes
71	Plod2	10771	-0.344	-0.2513	Yes
72	Tgfbi	10855	-0.356	-0.2417	Yes
73	Gpc1	11077	-0.388	-0.2417	Yes
74	Fstl1	11147	-0.393	-0.2292	Yes
75	Sat1	11297	-0.417	-0.2220	Yes
76	Vegfa	11309	-0.419	-0.2036	Yes
77	Fas	11642	-0.481	-0.2084	Yes
78	Thbs1	11746	-0.504	-0.1935	Yes
79	Cd44	11804	-0.524	-0.1739	Yes
80	Capg	11857	-0.537	-0.1534	Yes
81	Fermt2	11897	-0.546	-0.1313	Yes
82	Fap	11945	-0.566	-0.1090	Yes
83	Tgm2	12135	-0.657	-0.0940	Yes
84	Wipf1	12210	-0.726	-0.0665	Yes
85	Rhob	12288	-0.841	-0.0339	Yes
86	Fbn1	12299	-0.863	0.0052	Yes