Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group3_versus_Group4.HSC_Pheno.cls#Group3_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.25600475
Normalized Enrichment Score (NES)	1.2417547
Nominal p-value	0.070866145
FDR q-value	0.44021636
FWER p-Value	0.892

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Nedd9	0	1.621	0.0464	Yes
2	Bcl10	137	0.790	0.0579	Yes
3	Slc20a1	138	0.790	0.0805	Yes
4	Ccnd1	158	0.770	0.1010	Yes
5	Wee1	204	0.729	0.1181	Yes
6	Tspo	265	0.693	0.1331	Yes
7	Gadd45b	302	0.672	0.1494	Yes
8	Cdk2	414	0.625	0.1582	Yes
9	Bcl2l1	652	0.558	0.1548	Yes
10	Ctnnb1	697	0.545	0.1668	Yes
11	Ccnd2	881	0.508	0.1663	Yes
12	Timp3	956	0.493	0.1744	Yes
13	Btg3	1284	0.443	0.1604	Yes
14	Retsat	1318	0.439	0.1702	Yes
15	Casp9	1331	0.437	0.1818	Yes
16	Bcl2l2	1409	0.425	0.1876	Yes
17	Dap3	1476	0.416	0.1941	Yes
18	F2r	1541	0.409	0.2006	Yes
19	Casp8	1600	0.401	0.2074	Yes
20	Add1	1654	0.395	0.2143	Yes
21	Cflar	1792	0.377	0.2139	Yes
22	Top2a	1929	0.359	0.2131	Yes
23	Casp1	2057	0.346	0.2126	Yes
24	Sod1	2126	0.338	0.2167	Yes
25	Cyld	2134	0.337	0.2258	Yes
26	Hmgb2	2290	0.322	0.2223	Yes
27	Dnaja1	2349	0.317	0.2267	Yes
28	Pdcd4	2389	0.312	0.2324	Yes
29	Il18	2425	0.308	0.2384	Yes
30	Ier3	2453	0.305	0.2449	Yes
31	Cdkn1b	2518	0.301	0.2483	Yes
32	Rock1	2578	0.295	0.2519	Yes
33	Dpyd	2703	0.286	0.2500	Yes
34	Fez1	2843	0.276	0.2465	Yes
35	Mmp2	2953	0.265	0.2452	Yes
36	Ebp	3013	0.261	0.2479	Yes
37	Gpx1	3067	0.259	0.2510	Yes
38	Tgfbr3	3096	0.256	0.2560	Yes
39	Gch1	3346	0.234	0.2424	No
40	Ifngr1	3698	0.206	0.2196	No
41	Casp6	3859	0.195	0.2121	No
42	App	4019	0.183	0.2044	No
43	Ank	4066	0.179	0.2057	No
44	Bax	4302	0.161	0.1912	No
45	Pdgfrb	4627	0.138	0.1686	No
46	Gna15	4784	0.127	0.1595	No
47	Gsr	4918	0.119	0.1521	No
48	Lmna	4965	0.115	0.1516	No
49	Isg20	5017	0.112	0.1506	No
50	Bcap31	5188	0.100	0.1396	No
51	Anxa1	5301	0.091	0.1330	No
52	Sptan1	5700	0.063	0.1023	No
53	Smad7	5819	0.054	0.0942	No
54	Eno2	5861	0.051	0.0923	No
55	Ppt1	5985	0.043	0.0835	No
56	Gsn	6028	0.041	0.0813	No
57	Pea15a	6151	0.034	0.0723	No
58	Igf2r	6346	0.019	0.0570	No
59	Timp2	6534	0.007	0.0419	No
60	Plcb2	6579	0.004	0.0384	No
61	Brca1	6822	-0.006	0.0188	No
62	Diablo	6870	-0.009	0.0153	No
63	Bnip3l	6964	-0.016	0.0081	No
64	Clu	7015	-0.020	0.0046	No
65	Casp2	7086	-0.024	-0.0004	No
66	Madd	7120	-0.027	-0.0024	No
67	Bgn	7126	-0.027	-0.0020	No
68	Dap	7391	-0.046	-0.0222	No
69	Ifitm3	7545	-0.056	-0.0331	No
70	Hgf	7555	-0.057	-0.0322	No
71	Tap1	7723	-0.069	-0.0439	No
72	Dnm1l	7726	-0.070	-0.0421	No
73	Casp4	7855	-0.079	-0.0503	No
74	Sod2	8052	-0.096	-0.0635	No
75	Psen2	8117	-0.099	-0.0659	No
76	H1f0	8167	-0.104	-0.0669	No
77	Rara	8261	-0.110	-0.0714	No
78	Sqstm1	8384	-0.121	-0.0779	No
79	Rnasel	8567	-0.134	-0.0889	No
80	Mgmt	8590	-0.137	-0.0868	No
81	Gpx4	8753	-0.151	-0.0957	No
82	Rela	8791	-0.157	-0.0942	No
83	Txnip	8832	-0.160	-0.0929	No
84	Ptk2	8916	-0.165	-0.0950	No
85	Birc3	9072	-0.176	-0.1026	No
86	Mcl1	9437	-0.206	-0.1264	No
87	Xiap	9487	-0.212	-0.1244	No
88	Bid	9522	-0.216	-0.1210	No
89	Rhot2	9552	-0.218	-0.1171	No
90	Gpx3	9638	-0.224	-0.1176	No
91	Erbb3	10147	-0.274	-0.1513	No
92	Tnfsf10	10179	-0.275	-0.1460	No
93	Casp7	10212	-0.278	-0.1406	No
94	Sc5d	10300	-0.287	-0.1395	No
95	Krt18	10369	-0.294	-0.1366	No
96	Pak1	10403	-0.297	-0.1308	No
97	Cd38	10591	-0.320	-0.1370	No
98	Jun	10678	-0.331	-0.1345	No
99	Etf1	10751	-0.341	-0.1306	No
100	Nefh	10784	-0.346	-0.1234	No
101	Ppp3r1	10818	-0.351	-0.1160	No
102	Vdac2	11039	-0.382	-0.1230	No
103	Satb1	11093	-0.388	-0.1162	No
104	Sat1	11297	-0.417	-0.1209	No
105	Casp3	11298	-0.417	-0.1090	No
106	Fdxr	11308	-0.419	-0.0977	No
107	Bmf	11347	-0.424	-0.0887	No
108	Bcl2l11	11470	-0.445	-0.0859	No
109	Dffa	11483	-0.448	-0.0741	No
110	Cdc25b	11521	-0.455	-0.0641	No
111	Ddit3	11617	-0.474	-0.0583	No
112	Fas	11642	-0.481	-0.0465	No
113	Crebbp	11788	-0.518	-0.0435	No
114	Cd44	11804	-0.524	-0.0298	No
115	Psen1	11812	-0.526	-0.0153	No
116	Dnajc3	11905	-0.549	-0.0071	No
117	Irf1	12198	-0.709	-0.0107	No
118	Rhob	12288	-0.841	0.0061	No