Details for gene set HALLMARK_APICAL

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group2_versus_Group4.HSC_Pheno.cls#Group2_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_APICAL_JUNCTION
Enrichment Score (ES)	0.2391371
Normalized Enrichment Score (NES)	1.0277308
Nominal p-value	0.4108527
FDR q-value	0.68486637
FWER p-Value	0.994

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Nectin1	61	0.943	0.0201	Yes
2	Crat	92	0.878	0.0411	Yes
3	Amigo2	134	0.809	0.0593	Yes
4	Lima1	341	0.656	0.0599	Yes
5	Syk	409	0.629	0.0712	Yes
6	Cdk8	470	0.602	0.0824	Yes
7	Pik3cb	555	0.578	0.0909	Yes
8	Adam15	578	0.569	0.1042	Yes
9	Ikbkg	605	0.563	0.1171	Yes
10	Ptprc	625	0.556	0.1304	Yes
11	Pkd1	688	0.543	0.1398	Yes
12	Actg1	754	0.530	0.1486	Yes
13	Rsu1	854	0.510	0.1541	Yes
14	Nectin3	855	0.509	0.1676	Yes
15	Actn1	988	0.485	0.1698	Yes
16	Sirpa	1033	0.476	0.1789	Yes
17	Myl12b	1044	0.475	0.1907	Yes
18	Pten	1078	0.470	0.2005	Yes
19	Nectin4	1223	0.446	0.2006	Yes
20	Tjp1	1293	0.438	0.2067	Yes
21	Plcg1	1358	0.429	0.2129	Yes
22	Pard6g	1639	0.392	0.2004	Yes
23	Cd86	1727	0.382	0.2035	Yes
24	Src	1742	0.380	0.2125	Yes
25	Dlg1	1756	0.379	0.2215	Yes
26	Myh9	1810	0.374	0.2272	Yes
27	Map4k2	1889	0.365	0.2305	Yes
28	Nrap	1956	0.359	0.2347	Yes
29	Cap1	2018	0.353	0.2391	Yes
30	Lama3	2235	0.332	0.2303	No
31	Sgce	2359	0.321	0.2288	No
32	Nrtn	2620	0.296	0.2155	No
33	Ctnna1	2670	0.294	0.2193	No
34	Itga9	2683	0.293	0.2261	No
35	Speg	2813	0.280	0.2230	No
36	Cnn2	2862	0.277	0.2265	No
37	Gnai1	2904	0.272	0.2304	No
38	Epb41l2	2993	0.265	0.2303	No
39	Tro	3095	0.255	0.2288	No
40	Slit2	3166	0.249	0.2297	No
41	Lamb3	3168	0.249	0.2363	No
42	Wasl	3365	0.233	0.2265	No
43	Tspan4	3374	0.232	0.2320	No
44	Cd34	3447	0.227	0.2322	No
45	Skap2	3500	0.222	0.2339	No
46	Adam9	3559	0.218	0.2349	No
47	Baiap2	3633	0.214	0.2347	No
48	Evl	3692	0.209	0.2355	No
49	Mpzl1	3891	0.191	0.2244	No
50	Dhx16	3908	0.189	0.2281	No
51	Pals1	3932	0.187	0.2312	No
52	Gnai2	4348	0.156	0.2015	No
53	Fscn1	4519	0.143	0.1914	No
54	Akt2	4604	0.136	0.1882	No
55	Icam2	4902	0.115	0.1670	No
56	Vcl	5047	0.108	0.1581	No
57	Myh10	5146	0.102	0.1528	No
58	Arhgef6	5639	0.065	0.1143	No
59	Mmp2	5894	0.047	0.0948	No
60	Exoc4	5895	0.047	0.0961	No
61	Jup	5898	0.047	0.0972	No
62	Rhof	5988	0.040	0.0910	No
63	Tsc1	6040	0.036	0.0878	No
64	Tial1	6213	0.023	0.0743	No
65	Zyx	6301	0.016	0.0677	No
66	Msn	6583	-0.001	0.0447	No
67	Pbx2	6606	-0.002	0.0430	No
68	Shc1	6623	-0.004	0.0418	No
69	Cercam	6751	-0.013	0.0318	No
70	Bmp1	6824	-0.018	0.0264	No
71	Vwf	6851	-0.019	0.0247	No
72	Mapk14	6859	-0.020	0.0247	No
73	Itga3	6882	-0.022	0.0235	No
74	Itga2	7109	-0.038	0.0060	No
75	Cadm2	7152	-0.041	0.0037	No
76	Nrxn2	7553	-0.074	-0.0270	No
77	Jam3	7692	-0.085	-0.0360	No
78	Arpc2	7882	-0.098	-0.0489	No
79	Hadh	8053	-0.111	-0.0598	No
80	Map3k20	8153	-0.117	-0.0648	No
81	Itgb1	8219	-0.123	-0.0668	No
82	Pecam1	8232	-0.124	-0.0645	No
83	Ptk2	8239	-0.125	-0.0616	No
84	Vav2	8370	-0.136	-0.0686	No
85	Cntn1	8373	-0.136	-0.0652	No
86	Gtf2f1	8521	-0.149	-0.0732	No
87	Nlgn2	8567	-0.152	-0.0728	No
88	Actn4	8679	-0.160	-0.0776	No
89	Sorbs3	8816	-0.169	-0.0842	No
90	Taok2	8839	-0.171	-0.0815	No
91	Layn	9107	-0.193	-0.0982	No
92	Cd274	9460	-0.223	-0.1210	No
93	Ldlrap1	9566	-0.233	-0.1233	No
94	Sdc3	9647	-0.242	-0.1234	No
95	Tgfbi	9709	-0.248	-0.1218	No
96	Sympk	9739	-0.251	-0.1175	No
97	Nf2	9856	-0.261	-0.1200	No
98	Actb	9865	-0.262	-0.1137	No
99	Col16a1	9901	-0.263	-0.1096	No
100	B4galt1	9923	-0.266	-0.1042	No
101	Vcan	10082	-0.282	-0.1096	No
102	Cx3cl1	10146	-0.287	-0.1071	No
103	Ctnnd1	10429	-0.316	-0.1217	No
104	Ywhah	10736	-0.352	-0.1373	No
105	Shroom2	10815	-0.362	-0.1341	No
106	Rac2	10859	-0.369	-0.1278	No
107	Vasp	10905	-0.375	-0.1215	No
108	Icam1	10973	-0.384	-0.1167	No
109	Itga10	11012	-0.388	-0.1095	No
110	Kcnh2	11046	-0.393	-0.1017	No
111	Tubg1	11136	-0.405	-0.0982	No
112	Cd276	11137	-0.405	-0.0874	No
113	Insig1	11302	-0.427	-0.0894	No
114	Nf1	11349	-0.432	-0.0817	No
115	Rras	11667	-0.489	-0.0946	No
116	Akt3	11700	-0.501	-0.0838	No
117	Rasa1	11741	-0.508	-0.0736	No
118	Traf1	11779	-0.518	-0.0628	No
119	Fbn1	11906	-0.552	-0.0584	No
120	Stx4a	12071	-0.618	-0.0553	No
121	Pfn1	12109	-0.642	-0.0412	No
122	Tmem8b	12121	-0.645	-0.0249	No
123	Inppl1	12279	-0.778	-0.0170	No
124	Amigo1	12316	-0.894	0.0038	No