| Dataset | HSC.HSC_Pheno.cls#Group2_versus_Group3.HSC_Pheno.cls#Group2_versus_Group3_repos |
| Phenotype | HSC_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.2179151 |
| Normalized Enrichment Score (NES) | -0.9699938 |
| Nominal p-value | 0.4889336 |
| FDR q-value | 0.6276154 |
| FWER p-Value | 0.998 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Snx24 | 58 | 0.921 | 0.0215 | No |
| 2 | Fos | 134 | 0.795 | 0.0380 | No |
| 3 | Pgr | 212 | 0.729 | 0.0525 | No |
| 4 | Bhlhe40 | 315 | 0.658 | 0.0629 | No |
| 5 | Tpd52l1 | 438 | 0.604 | 0.0701 | No |
| 6 | Myof | 445 | 0.602 | 0.0868 | No |
| 7 | Xbp1 | 461 | 0.596 | 0.1025 | No |
| 8 | Nadsyn1 | 592 | 0.550 | 0.1076 | No |
| 9 | Slc19a2 | 659 | 0.531 | 0.1173 | No |
| 10 | Blvrb | 706 | 0.520 | 0.1284 | No |
| 11 | Mpped2 | 707 | 0.520 | 0.1432 | No |
| 12 | Klf10 | 961 | 0.467 | 0.1358 | No |
| 13 | Deptor | 1052 | 0.449 | 0.1412 | No |
| 14 | Cyp26b1 | 1054 | 0.449 | 0.1539 | No |
| 15 | Klf4 | 1166 | 0.428 | 0.1570 | No |
| 16 | Fkbp4 | 1175 | 0.426 | 0.1685 | No |
| 17 | Nrip1 | 1233 | 0.420 | 0.1758 | No |
| 18 | Elovl5 | 1292 | 0.409 | 0.1828 | No |
| 19 | Il6st | 1355 | 0.400 | 0.1891 | No |
| 20 | Tgif2 | 1525 | 0.381 | 0.1861 | No |
| 21 | Dynlt3 | 1653 | 0.365 | 0.1861 | No |
| 22 | Plaat3 | 1747 | 0.358 | 0.1887 | No |
| 23 | Nxt1 | 1886 | 0.342 | 0.1872 | No |
| 24 | Slc1a1 | 2166 | 0.310 | 0.1733 | No |
| 25 | Amfr | 2223 | 0.306 | 0.1774 | No |
| 26 | Adcy9 | 2238 | 0.304 | 0.1849 | No |
| 27 | Slc24a3 | 2268 | 0.301 | 0.1911 | No |
| 28 | Mindy1 | 2282 | 0.300 | 0.1986 | No |
| 29 | Igf1r | 2299 | 0.297 | 0.2057 | No |
| 30 | Mlph | 2412 | 0.283 | 0.2046 | No |
| 31 | Farp1 | 2672 | 0.255 | 0.1908 | No |
| 32 | Dlc1 | 2684 | 0.254 | 0.1971 | No |
| 33 | Tob1 | 2691 | 0.254 | 0.2038 | No |
| 34 | Siah2 | 2756 | 0.248 | 0.2057 | No |
| 35 | Cant1 | 3381 | 0.190 | 0.1601 | No |
| 36 | Tiam1 | 3582 | 0.174 | 0.1487 | No |
| 37 | Mybl1 | 3594 | 0.174 | 0.1528 | No |
| 38 | Abhd2 | 3714 | 0.166 | 0.1478 | No |
| 39 | Itpk1 | 3754 | 0.163 | 0.1492 | No |
| 40 | Ablim1 | 3761 | 0.162 | 0.1534 | No |
| 41 | Asb13 | 3875 | 0.153 | 0.1485 | No |
| 42 | Med24 | 4037 | 0.142 | 0.1394 | No |
| 43 | Frk | 4095 | 0.137 | 0.1386 | No |
| 44 | Elf1 | 4139 | 0.134 | 0.1389 | No |
| 45 | Krt18 | 4285 | 0.122 | 0.1306 | No |
| 46 | Syngr1 | 4360 | 0.116 | 0.1278 | No |
| 47 | Endod1 | 4468 | 0.110 | 0.1222 | No |
| 48 | Myb | 4618 | 0.102 | 0.1130 | No |
| 49 | Sh3bp5 | 4694 | 0.096 | 0.1096 | No |
| 50 | Scnn1a | 4938 | 0.077 | 0.0919 | No |
| 51 | Thsd4 | 5048 | 0.069 | 0.0850 | No |
| 52 | Slc37a1 | 5081 | 0.065 | 0.0842 | No |
| 53 | Retreg1 | 5277 | 0.052 | 0.0697 | No |
| 54 | Gab2 | 5370 | 0.045 | 0.0635 | No |
| 55 | Fdft1 | 5491 | 0.036 | 0.0547 | No |
| 56 | Kcnk5 | 5530 | 0.033 | 0.0526 | No |
| 57 | Flnb | 5680 | 0.023 | 0.0410 | No |
| 58 | Isg20l2 | 5720 | 0.020 | 0.0384 | No |
| 59 | Rps6ka2 | 5736 | 0.019 | 0.0377 | No |
| 60 | Mybbp1a | 5856 | 0.011 | 0.0283 | No |
| 61 | Tgm2 | 5908 | 0.009 | 0.0244 | No |
| 62 | Celsr1 | 5909 | 0.009 | 0.0247 | No |
| 63 | Kdm4b | 6181 | -0.007 | 0.0027 | No |
| 64 | Inpp5f | 6216 | -0.009 | 0.0002 | No |
| 65 | Cd44 | 6228 | -0.010 | -0.0004 | No |
| 66 | Mast4 | 6336 | -0.017 | -0.0086 | No |
| 67 | Igfbp4 | 6361 | -0.019 | -0.0101 | No |
| 68 | Tjp3 | 6374 | -0.020 | -0.0105 | No |
| 69 | Rhobtb3 | 6393 | -0.021 | -0.0113 | No |
| 70 | Tmem164 | 6599 | -0.037 | -0.0271 | No |
| 71 | Unc119 | 6720 | -0.045 | -0.0356 | No |
| 72 | Ptges | 6756 | -0.048 | -0.0371 | No |
| 73 | Fkbp5 | 6824 | -0.052 | -0.0411 | No |
| 74 | Kazn | 6895 | -0.057 | -0.0452 | No |
| 75 | Opn3 | 6971 | -0.063 | -0.0495 | No |
| 76 | Rab17 | 7055 | -0.069 | -0.0543 | No |
| 77 | Ncor2 | 7107 | -0.073 | -0.0564 | No |
| 78 | Rara | 7326 | -0.091 | -0.0716 | No |
| 79 | Aff1 | 7329 | -0.091 | -0.0692 | No |
| 80 | Slc22a5 | 7561 | -0.109 | -0.0850 | No |
| 81 | Jak2 | 7588 | -0.111 | -0.0839 | No |
| 82 | Fasn | 7616 | -0.113 | -0.0829 | No |
| 83 | Anxa9 | 7748 | -0.125 | -0.0901 | No |
| 84 | Akap1 | 7836 | -0.130 | -0.0935 | No |
| 85 | Bag1 | 7923 | -0.137 | -0.0966 | No |
| 86 | Cish | 8029 | -0.146 | -0.1010 | No |
| 87 | Chpt1 | 8042 | -0.148 | -0.0978 | No |
| 88 | Slc39a6 | 8251 | -0.164 | -0.1102 | No |
| 89 | Rbbp8 | 8296 | -0.167 | -0.1090 | No |
| 90 | Gja1 | 8315 | -0.168 | -0.1057 | No |
| 91 | Myc | 8610 | -0.191 | -0.1243 | No |
| 92 | Rrp12 | 8634 | -0.193 | -0.1206 | No |
| 93 | Tiparp | 8763 | -0.200 | -0.1254 | No |
| 94 | Lrig1 | 8789 | -0.203 | -0.1216 | No |
| 95 | Med13l | 9067 | -0.224 | -0.1379 | No |
| 96 | P2ry2 | 9164 | -0.232 | -0.1391 | No |
| 97 | Nav2 | 9719 | -0.279 | -0.1765 | No |
| 98 | Sult2b1 | 9795 | -0.286 | -0.1744 | No |
| 99 | Ugcg | 10004 | -0.301 | -0.1829 | No |
| 100 | Podxl | 10434 | -0.341 | -0.2082 | Yes |
| 101 | Ar | 10475 | -0.345 | -0.2016 | Yes |
| 102 | Slc7a5 | 10584 | -0.358 | -0.2003 | Yes |
| 103 | Tbc1d30 | 10638 | -0.363 | -0.1943 | Yes |
| 104 | Slc26a2 | 10676 | -0.368 | -0.1868 | Yes |
| 105 | Pex11a | 10799 | -0.385 | -0.1858 | Yes |
| 106 | Dhrs3 | 10824 | -0.389 | -0.1767 | Yes |
| 107 | Rab31 | 10995 | -0.415 | -0.1788 | Yes |
| 108 | Celsr2 | 11217 | -0.446 | -0.1841 | Yes |
| 109 | Slc2a1 | 11452 | -0.485 | -0.1895 | Yes |
| 110 | Sec14l2 | 11473 | -0.488 | -0.1772 | Yes |
| 111 | B4galt1 | 11474 | -0.488 | -0.1633 | Yes |
| 112 | Add3 | 11550 | -0.504 | -0.1551 | Yes |
| 113 | Slc16a1 | 11584 | -0.510 | -0.1433 | Yes |
| 114 | Svil | 11775 | -0.557 | -0.1429 | Yes |
| 115 | Abat | 11776 | -0.557 | -0.1271 | Yes |
| 116 | Ppif | 11919 | -0.609 | -0.1213 | Yes |
| 117 | Ttc39a | 11931 | -0.612 | -0.1048 | Yes |
| 118 | Bcl2 | 11991 | -0.638 | -0.0915 | Yes |
| 119 | Dhcr7 | 12015 | -0.650 | -0.0748 | Yes |
| 120 | Cbfa2t3 | 12035 | -0.661 | -0.0576 | Yes |
| 121 | Scarb1 | 12136 | -0.710 | -0.0455 | Yes |
| 122 | Ccnd1 | 12137 | -0.711 | -0.0253 | Yes |
| 123 | Arl3 | 12153 | -0.722 | -0.0059 | Yes |
| 124 | Abca3 | 12260 | -0.808 | 0.0084 | Yes |

