Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group2_versus_Group3.HSC_Pheno.cls#Group2_versus_Group3_repos
Phenotype	HSC_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.24772282
Normalized Enrichment Score (NES)	-1.1210507
Nominal p-value	0.23123732
FDR q-value	0.62245905
FWER p-Value	0.978

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Txnip	71	0.904	0.0202	No
2	Birc3	85	0.873	0.0442	No
3	Jun	219	0.717	0.0539	No
4	Mcl1	223	0.715	0.0742	No
5	Anxa1	272	0.688	0.0901	No
6	Sat1	292	0.672	0.1078	No
7	Rhob	306	0.661	0.1258	No
8	Satb1	505	0.578	0.1262	No
9	Casp3	729	0.512	0.1227	No
10	Fas	732	0.512	0.1372	No
11	Irf1	1170	0.427	0.1138	No
12	Cdk2	1427	0.392	0.1042	No
13	Dap	1769	0.355	0.0865	No
14	Pak1	1858	0.344	0.0892	No
15	Erbb3	1969	0.332	0.0898	No
16	Gch1	2022	0.328	0.0949	No
17	Psen1	2277	0.300	0.0828	No
18	Cdc25b	2279	0.300	0.0914	No
19	Vdac2	2589	0.263	0.0737	No
20	Fdxr	2628	0.260	0.0780	No
21	Tnfsf10	2739	0.250	0.0762	No
22	Bmf	2771	0.247	0.0808	No
23	Ddit3	2806	0.244	0.0850	No
24	Cd38	2822	0.243	0.0908	No
25	Bgn	3017	0.223	0.0813	No
26	Fez1	3096	0.216	0.0812	No
27	Ifitm3	3386	0.189	0.0630	No
28	Dffa	3448	0.184	0.0633	No
29	Gsr	3481	0.182	0.0659	No
30	Ppp3r1	3583	0.174	0.0627	No
31	Rela	3629	0.174	0.0640	No
32	Psen2	3751	0.163	0.0588	No
33	Xiap	3752	0.163	0.0635	No
34	Hmgb2	3755	0.163	0.0680	No
35	Casp9	3767	0.162	0.0717	No
36	Madd	3872	0.154	0.0677	No
37	Sptan1	3873	0.153	0.0721	No
38	Dpyd	3890	0.153	0.0751	No
39	Dnajc3	3907	0.151	0.0782	No
40	Sc5d	4214	0.128	0.0569	No
41	Krt18	4285	0.122	0.0547	No
42	Hgf	4368	0.116	0.0513	No
43	Ifngr1	4563	0.105	0.0385	No
44	Crebbp	4620	0.101	0.0368	No
45	Bcl2l2	4653	0.099	0.0370	No
46	Il18	4716	0.094	0.0347	No
47	Cdkn1b	4739	0.092	0.0355	No
48	Tgfbr3	4755	0.090	0.0369	No
49	Rhot2	4766	0.090	0.0386	No
50	Smad7	4971	0.075	0.0241	No
51	Timp2	5401	0.042	-0.0097	No
52	Ptk2	5582	0.030	-0.0235	No
53	Ppt1	5921	0.008	-0.0509	No
54	Bnip3l	6158	-0.005	-0.0700	No
55	Cd44	6228	-0.010	-0.0754	No
56	Pea15a	6434	-0.024	-0.0914	No
57	Clu	6467	-0.026	-0.0933	No
58	Ier3	6474	-0.027	-0.0930	No
59	Cyld	6494	-0.029	-0.0937	No
60	Etf1	6612	-0.037	-0.1022	No
61	Casp6	6701	-0.044	-0.1081	No
62	Dnm1l	6815	-0.051	-0.1159	No
63	Plcb2	6865	-0.055	-0.1183	No
64	Btg3	7045	-0.069	-0.1310	No
65	Ctnnb1	7135	-0.074	-0.1361	No
66	Ank	7180	-0.077	-0.1375	No
67	Rnasel	7216	-0.081	-0.1380	No
68	Rara	7326	-0.091	-0.1443	No
69	Retsat	7345	-0.093	-0.1431	No
70	Lmna	7349	-0.093	-0.1407	No
71	Ebp	7352	-0.094	-0.1382	No
72	Diablo	7536	-0.107	-0.1500	No
73	Gadd45b	7747	-0.124	-0.1636	No
74	Eno2	8328	-0.169	-0.2061	No
75	Gna15	8371	-0.173	-0.2046	No
76	Bcl2l11	8539	-0.185	-0.2129	No
77	Bcap31	8608	-0.191	-0.2130	No
78	Sqstm1	8733	-0.198	-0.2174	No
79	Sod2	8812	-0.205	-0.2179	No
80	Pdgfrb	8896	-0.210	-0.2186	No
81	Casp4	8899	-0.211	-0.2127	No
82	Casp2	8994	-0.218	-0.2142	No
83	Gpx1	9019	-0.220	-0.2098	No
84	Isg20	9083	-0.226	-0.2085	No
85	Casp8	9174	-0.233	-0.2091	No
86	Mmp2	9284	-0.242	-0.2111	No
87	Top2a	9393	-0.250	-0.2127	No
88	Gpx3	9580	-0.267	-0.2202	No
89	Casp7	9764	-0.284	-0.2270	No
90	Gsn	9782	-0.285	-0.2202	No
91	Nefh	10008	-0.301	-0.2299	No
92	Gpx4	10210	-0.319	-0.2372	No
93	Mgmt	10340	-0.330	-0.2382	Yes
94	F2r	10381	-0.333	-0.2319	Yes
95	Pdcd4	10520	-0.350	-0.2332	Yes
96	Timp3	10570	-0.356	-0.2269	Yes
97	H1f0	10592	-0.359	-0.2183	Yes
98	Nedd9	10609	-0.361	-0.2093	Yes
99	Cflar	10653	-0.364	-0.2023	Yes
100	Add1	10657	-0.365	-0.1921	Yes
101	App	10680	-0.368	-0.1833	Yes
102	Brca1	10793	-0.384	-0.1814	Yes
103	Bcl10	10848	-0.392	-0.1746	Yes
104	Rock1	11027	-0.418	-0.1771	Yes
105	Igf2r	11035	-0.419	-0.1656	Yes
106	Casp1	11652	-0.526	-0.2008	Yes
107	Dnaja1	11712	-0.538	-0.1901	Yes
108	Bcl2l1	11870	-0.591	-0.1860	Yes
109	Tspo	11932	-0.613	-0.1734	Yes
110	Ccnd2	11944	-0.617	-0.1566	Yes
111	Sod1	12003	-0.643	-0.1428	Yes
112	Dap3	12022	-0.654	-0.1255	Yes
113	Tap1	12036	-0.662	-0.1075	Yes
114	Slc20a1	12117	-0.698	-0.0940	Yes
115	Ccnd1	12137	-0.711	-0.0751	Yes
116	Bid	12175	-0.735	-0.0571	Yes
117	Bax	12341	-1.030	-0.0410	Yes
118	Wee1	12362	-1.485	0.0001	Yes