Details for gene set HALLMARK_APICAL

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group2_versus_Group3.HSC_Pheno.cls#Group2_versus_Group3_repos
Phenotype	HSC_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APICAL_JUNCTION
Enrichment Score (ES)	-0.2740515
Normalized Enrichment Score (NES)	-1.2470591
Nominal p-value	0.07581967
FDR q-value	0.4727013
FWER p-Value	0.85

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Nectin1	91	0.866	0.0196	No
2	Amigo2	182	0.754	0.0358	No
3	Pals1	218	0.720	0.0554	No
4	Dlg1	254	0.698	0.0743	No
5	Itga3	544	0.566	0.0683	No
6	Actg1	598	0.550	0.0812	No
7	Shc1	672	0.529	0.0917	No
8	Tjp1	1146	0.432	0.0666	No
9	Fbn1	1262	0.415	0.0701	No
10	Cd34	1672	0.364	0.0480	No
11	Cdk8	1800	0.352	0.0487	No
12	Tsc1	1838	0.347	0.0565	No
13	Fscn1	1947	0.334	0.0581	No
14	Mpzl1	2040	0.325	0.0607	No
15	Akt3	2110	0.317	0.0650	No
16	Hadh	2150	0.312	0.0715	No
17	Adam15	2465	0.278	0.0545	No
18	Actn1	2469	0.277	0.0629	No
19	Jup	2740	0.250	0.0487	No
20	Pecam1	2762	0.247	0.0547	No
21	Tgfbi	3039	0.220	0.0390	No
22	Adam9	3069	0.218	0.0434	No
23	Kcnh2	3108	0.215	0.0470	No
24	Gnai2	3169	0.209	0.0487	No
25	Vwf	3256	0.200	0.0479	No
26	Cnn2	3435	0.186	0.0391	No
27	Nectin3	3487	0.181	0.0406	No
28	Nrtn	3543	0.177	0.0416	No
29	Dhx16	3861	0.154	0.0206	No
30	Cd86	3903	0.152	0.0219	No
31	Pik3cb	3920	0.151	0.0253	No
32	Nrxn2	4016	0.143	0.0220	No
33	Akt2	4236	0.126	0.0081	No
34	Lima1	4321	0.119	0.0049	No
35	Pkd1	4343	0.118	0.0069	No
36	Tro	4362	0.116	0.0090	No
37	Icam2	4384	0.115	0.0109	No
38	Slit2	4403	0.113	0.0130	No
39	Rhof	4579	0.104	0.0019	No
40	Actb	4952	0.076	-0.0261	No
41	Itga9	4954	0.076	-0.0238	No
42	Lamb3	4957	0.076	-0.0216	No
43	Itgb1	5000	0.072	-0.0228	No
44	Plcg1	5052	0.068	-0.0248	No
45	Shroom2	5064	0.067	-0.0236	No
46	Crat	5071	0.066	-0.0221	No
47	Bmp1	5190	0.059	-0.0299	No
48	Ctnna1	5238	0.055	-0.0320	No
49	Msn	5282	0.052	-0.0339	No
50	Evl	5393	0.043	-0.0415	No
51	Cntn1	5436	0.039	-0.0437	No
52	Ptk2	5582	0.030	-0.0546	No
53	Ptprc	5595	0.029	-0.0547	No
54	Sirpa	5602	0.028	-0.0543	No
55	Skap2	5606	0.028	-0.0537	No
56	Taok2	5650	0.025	-0.0564	No
57	Rsu1	6002	0.002	-0.0851	No
58	Cadm2	6080	-0.000	-0.0914	No
59	Actn4	6217	-0.010	-0.1022	No
60	Sgce	6231	-0.011	-0.1029	No
61	Col16a1	6281	-0.013	-0.1065	No
62	Tspan4	6293	-0.015	-0.1069	No
63	Pten	6368	-0.019	-0.1124	No
64	Epb41l2	6570	-0.034	-0.1277	No
65	Vcl	6631	-0.039	-0.1314	No
66	Ikbkg	6657	-0.041	-0.1322	No
67	Tial1	6813	-0.051	-0.1432	No
68	Cercam	7193	-0.078	-0.1718	No
69	Src	7376	-0.095	-0.1837	No
70	Speg	7414	-0.098	-0.1836	No
71	Cd274	7606	-0.112	-0.1957	No
72	Zyx	7639	-0.115	-0.1947	No
73	Nrap	7711	-0.122	-0.1967	No
74	Icam1	7761	-0.125	-0.1968	No
75	Vav2	7805	-0.128	-0.1964	No
76	Itga2	7865	-0.132	-0.1971	No
77	Traf1	7880	-0.134	-0.1940	No
78	Exoc4	7915	-0.136	-0.1926	No
79	Nf2	8017	-0.145	-0.1963	No
80	Myh10	8037	-0.147	-0.1933	No
81	Myh9	8165	-0.156	-0.1988	No
82	Ldlrap1	8265	-0.165	-0.2017	No
83	Arhgef6	8318	-0.168	-0.2007	No
84	Myl12b	8428	-0.177	-0.2041	No
85	Jam3	8615	-0.192	-0.2133	No
86	Nectin4	8940	-0.213	-0.2332	No
87	Ywhah	9014	-0.219	-0.2323	No
88	Sdc3	9139	-0.230	-0.2352	No
89	Baiap2	9173	-0.233	-0.2307	No
90	Mmp2	9284	-0.242	-0.2321	No
91	Cx3cl1	9688	-0.276	-0.2564	No
92	Vcan	9780	-0.285	-0.2549	No
93	Gnai1	10015	-0.302	-0.2646	Yes
94	Arpc2	10107	-0.310	-0.2624	Yes
95	Nlgn2	10116	-0.310	-0.2534	Yes
96	Layn	10243	-0.321	-0.2536	Yes
97	Sympk	10301	-0.326	-0.2481	Yes
98	Sorbs3	10304	-0.327	-0.2381	Yes
99	Lama3	10323	-0.329	-0.2293	Yes
100	Map4k2	10370	-0.332	-0.2227	Yes
101	Pbx2	10473	-0.345	-0.2203	Yes
102	Wasl	10521	-0.350	-0.2132	Yes
103	Gtf2f1	10581	-0.357	-0.2068	Yes
104	Nf1	10600	-0.359	-0.1971	Yes
105	Syk	10977	-0.412	-0.2149	Yes
106	Pard6g	11056	-0.422	-0.2082	Yes
107	Tmem8b	11072	-0.424	-0.1961	Yes
108	Ctnnd1	11142	-0.434	-0.1882	Yes
109	Tubg1	11247	-0.450	-0.1827	Yes
110	Rras	11248	-0.450	-0.1687	Yes
111	Itga10	11404	-0.475	-0.1665	Yes
112	Mapk14	11453	-0.485	-0.1553	Yes
113	B4galt1	11474	-0.488	-0.1417	Yes
114	Insig1	11488	-0.490	-0.1275	Yes
115	Vasp	11569	-0.507	-0.1182	Yes
116	Pfn1	11660	-0.529	-0.1090	Yes
117	Rac2	11737	-0.548	-0.0981	Yes
118	Cd276	11767	-0.556	-0.0832	Yes
119	Amigo1	11811	-0.568	-0.0690	Yes
120	Cap1	11886	-0.596	-0.0564	Yes
121	Stx4a	12007	-0.646	-0.0461	Yes
122	Rasa1	12065	-0.674	-0.0297	Yes
123	Map3k20	12287	-0.843	-0.0214	Yes
124	Inppl1	12305	-0.883	0.0047	Yes