| Dataset | HSC.HSC_Pheno.cls#Group1_versus_Group4.HSC_Pheno.cls#Group1_versus_Group4_repos |
| Phenotype | HSC_Pheno.cls#Group1_versus_Group4_repos |
| Upregulated in class | 3 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.25245723 |
| Normalized Enrichment Score (NES) | -1.1036724 |
| Nominal p-value | 0.30705395 |
| FDR q-value | 0.85693854 |
| FWER p-Value | 0.989 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Nxt1 | 271 | 0.777 | 0.0046 | No |
| 2 | Jak2 | 573 | 0.637 | 0.0018 | No |
| 3 | Mpped2 | 763 | 0.580 | 0.0063 | No |
| 4 | Sult2b1 | 1022 | 0.530 | 0.0035 | No |
| 5 | Asb13 | 1251 | 0.485 | 0.0015 | No |
| 6 | Lrig1 | 1285 | 0.480 | 0.0153 | No |
| 7 | Celsr2 | 1754 | 0.413 | -0.0087 | No |
| 8 | Mlph | 1780 | 0.411 | 0.0033 | No |
| 9 | Med13l | 1821 | 0.405 | 0.0140 | No |
| 10 | Mybl1 | 2093 | 0.375 | 0.0047 | No |
| 11 | Scnn1a | 2190 | 0.364 | 0.0094 | No |
| 12 | Podxl | 2252 | 0.356 | 0.0166 | No |
| 13 | Abhd2 | 2307 | 0.350 | 0.0243 | No |
| 14 | Tob1 | 2420 | 0.338 | 0.0267 | No |
| 15 | Itpk1 | 2464 | 0.334 | 0.0347 | No |
| 16 | Tjp3 | 2505 | 0.329 | 0.0428 | No |
| 17 | Ccnd1 | 2615 | 0.318 | 0.0448 | No |
| 18 | Myc | 2754 | 0.303 | 0.0439 | No |
| 19 | Ttc39a | 2841 | 0.294 | 0.0470 | No |
| 20 | Opn3 | 3172 | 0.261 | 0.0290 | No |
| 21 | Med24 | 3406 | 0.244 | 0.0184 | No |
| 22 | Fkbp4 | 3545 | 0.231 | 0.0150 | No |
| 23 | Endod1 | 3688 | 0.221 | 0.0110 | No |
| 24 | Sec14l2 | 3722 | 0.218 | 0.0158 | No |
| 25 | Slc1a1 | 3858 | 0.208 | 0.0119 | No |
| 26 | Pgr | 3862 | 0.208 | 0.0188 | No |
| 27 | Nadsyn1 | 4084 | 0.191 | 0.0073 | No |
| 28 | Ppif | 4099 | 0.189 | 0.0127 | No |
| 29 | Retreg1 | 4175 | 0.182 | 0.0128 | No |
| 30 | Tpd52l1 | 4333 | 0.169 | 0.0058 | No |
| 31 | Ugcg | 4363 | 0.167 | 0.0092 | No |
| 32 | Igf1r | 4440 | 0.162 | 0.0085 | No |
| 33 | Adcy9 | 4446 | 0.161 | 0.0137 | No |
| 34 | Slc2a1 | 4549 | 0.154 | 0.0106 | No |
| 35 | Flnb | 4595 | 0.150 | 0.0121 | No |
| 36 | Tbc1d30 | 4596 | 0.150 | 0.0173 | No |
| 37 | Tmem164 | 4633 | 0.147 | 0.0194 | No |
| 38 | Rhobtb3 | 4653 | 0.145 | 0.0228 | No |
| 39 | Ar | 4658 | 0.145 | 0.0275 | No |
| 40 | Rbbp8 | 4684 | 0.143 | 0.0303 | No |
| 41 | Slc37a1 | 4688 | 0.142 | 0.0350 | No |
| 42 | Slc22a5 | 4858 | 0.129 | 0.0256 | No |
| 43 | Cant1 | 4870 | 0.128 | 0.0291 | No |
| 44 | Rrp12 | 4932 | 0.124 | 0.0284 | No |
| 45 | Anxa9 | 5128 | 0.110 | 0.0162 | No |
| 46 | Fdft1 | 5176 | 0.106 | 0.0160 | No |
| 47 | Plaat3 | 5337 | 0.095 | 0.0062 | No |
| 48 | Gab2 | 5441 | 0.087 | 0.0008 | No |
| 49 | Pex11a | 5483 | 0.083 | 0.0003 | No |
| 50 | B4galt1 | 5573 | 0.077 | -0.0043 | No |
| 51 | Cyp26b1 | 5647 | 0.072 | -0.0078 | No |
| 52 | Il6st | 5690 | 0.069 | -0.0089 | No |
| 53 | Arl3 | 5751 | 0.066 | -0.0115 | No |
| 54 | Dynlt3 | 5777 | 0.063 | -0.0114 | No |
| 55 | Mybbp1a | 5782 | 0.063 | -0.0095 | No |
| 56 | Deptor | 5824 | 0.060 | -0.0108 | No |
| 57 | Mindy1 | 6048 | 0.042 | -0.0276 | No |
| 58 | Cbfa2t3 | 6124 | 0.038 | -0.0324 | No |
| 59 | Abca3 | 6204 | 0.033 | -0.0378 | No |
| 60 | Slc7a5 | 6254 | 0.030 | -0.0407 | No |
| 61 | Frk | 6355 | 0.023 | -0.0481 | No |
| 62 | Farp1 | 6543 | 0.010 | -0.0630 | No |
| 63 | P2ry2 | 6622 | 0.005 | -0.0692 | No |
| 64 | Slc39a6 | 6697 | 0.001 | -0.0752 | No |
| 65 | Unc119 | 6715 | 0.000 | -0.0766 | No |
| 66 | Klf4 | 6716 | 0.000 | -0.0766 | No |
| 67 | Abat | 6738 | 0.000 | -0.0784 | No |
| 68 | Elf1 | 6775 | -0.001 | -0.0812 | No |
| 69 | Xbp1 | 6917 | -0.010 | -0.0924 | No |
| 70 | Gja1 | 7155 | -0.027 | -0.1108 | No |
| 71 | Bcl2 | 7184 | -0.029 | -0.1121 | No |
| 72 | Dhrs3 | 7195 | -0.030 | -0.1119 | No |
| 73 | Igfbp4 | 7294 | -0.037 | -0.1187 | No |
| 74 | Rps6ka2 | 7722 | -0.068 | -0.1512 | No |
| 75 | Tiam1 | 7837 | -0.077 | -0.1579 | No |
| 76 | Fos | 7915 | -0.082 | -0.1614 | No |
| 77 | Tgif2 | 7988 | -0.088 | -0.1643 | No |
| 78 | Mast4 | 8059 | -0.094 | -0.1667 | No |
| 79 | Celsr1 | 8072 | -0.095 | -0.1645 | No |
| 80 | Rara | 8316 | -0.112 | -0.1805 | No |
| 81 | Siah2 | 8342 | -0.114 | -0.1786 | No |
| 82 | Ablim1 | 8374 | -0.116 | -0.1772 | No |
| 83 | Nrip1 | 8475 | -0.123 | -0.1811 | No |
| 84 | Sh3bp5 | 8530 | -0.128 | -0.1811 | No |
| 85 | Slc26a2 | 8559 | -0.131 | -0.1789 | No |
| 86 | Tiparp | 8587 | -0.132 | -0.1766 | No |
| 87 | Klf10 | 8689 | -0.138 | -0.1801 | No |
| 88 | Elovl5 | 8945 | -0.158 | -0.1955 | No |
| 89 | Bhlhe40 | 9026 | -0.165 | -0.1964 | No |
| 90 | Snx24 | 9124 | -0.172 | -0.1984 | No |
| 91 | Slc16a1 | 9175 | -0.177 | -0.1964 | No |
| 92 | Svil | 9237 | -0.183 | -0.1951 | No |
| 93 | Rab17 | 9305 | -0.188 | -0.1941 | No |
| 94 | Kdm4b | 9612 | -0.211 | -0.2118 | No |
| 95 | Dhcr7 | 9693 | -0.217 | -0.2109 | No |
| 96 | Ptges | 9951 | -0.242 | -0.2236 | No |
| 97 | Syngr1 | 10112 | -0.256 | -0.2279 | No |
| 98 | Ncor2 | 10311 | -0.275 | -0.2346 | No |
| 99 | Fasn | 10413 | -0.285 | -0.2331 | No |
| 100 | Akap1 | 10645 | -0.308 | -0.2414 | Yes |
| 101 | Kazn | 10761 | -0.321 | -0.2397 | Yes |
| 102 | Slc19a2 | 10918 | -0.339 | -0.2408 | Yes |
| 103 | Amfr | 10933 | -0.340 | -0.2303 | Yes |
| 104 | Slc24a3 | 10964 | -0.345 | -0.2209 | Yes |
| 105 | Blvrb | 10979 | -0.347 | -0.2101 | Yes |
| 106 | Dlc1 | 11002 | -0.350 | -0.1999 | Yes |
| 107 | Rab31 | 11067 | -0.358 | -0.1928 | Yes |
| 108 | Add3 | 11153 | -0.367 | -0.1871 | Yes |
| 109 | Isg20l2 | 11177 | -0.372 | -0.1762 | Yes |
| 110 | Inpp5f | 11200 | -0.375 | -0.1651 | Yes |
| 111 | Thsd4 | 11391 | -0.404 | -0.1668 | Yes |
| 112 | Myb | 11446 | -0.414 | -0.1570 | Yes |
| 113 | Kcnk5 | 11682 | -0.460 | -0.1604 | Yes |
| 114 | Bag1 | 11691 | -0.462 | -0.1451 | Yes |
| 115 | Scarb1 | 11733 | -0.471 | -0.1323 | Yes |
| 116 | Chpt1 | 11888 | -0.505 | -0.1276 | Yes |
| 117 | Fkbp5 | 11933 | -0.520 | -0.1133 | Yes |
| 118 | Cd44 | 11972 | -0.534 | -0.0980 | Yes |
| 119 | Cish | 12012 | -0.548 | -0.0824 | Yes |
| 120 | Myof | 12046 | -0.566 | -0.0656 | Yes |
| 121 | Krt18 | 12118 | -0.596 | -0.0509 | Yes |
| 122 | Aff1 | 12188 | -0.647 | -0.0343 | Yes |
| 123 | Nav2 | 12212 | -0.670 | -0.0132 | Yes |
| 124 | Tgm2 | 12269 | -0.740 | 0.0077 | Yes |

