Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group1_versus_Group4.HSC_Pheno.cls#Group1_versus_Group4_repos
Phenotype	HSC_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	0
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.22370954
Normalized Enrichment Score (NES)	1.0822252
Nominal p-value	0.28105906
FDR q-value	0.5797482
FWER p-Value	0.991

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Nedd9	38	1.162	0.0331	Yes
2	Bcl10	119	0.942	0.0559	Yes
3	Fez1	192	0.836	0.0761	Yes
4	Cdk2	323	0.751	0.0889	Yes
5	Casp9	523	0.652	0.0929	Yes
6	Btg3	537	0.650	0.1121	Yes
7	Cdkn1b	569	0.638	0.1295	Yes
8	Timp3	606	0.626	0.1460	Yes
9	Mcl1	933	0.546	0.1364	Yes
10	Gadd45b	967	0.540	0.1505	Yes
11	Anxa1	1193	0.496	0.1476	Yes
12	Ank	1215	0.491	0.1612	Yes
13	Gna15	1325	0.472	0.1670	Yes
14	Top2a	1544	0.438	0.1628	Yes
15	Dpyd	1602	0.431	0.1716	Yes
16	Dap3	1659	0.424	0.1802	Yes
17	Gsn	1772	0.411	0.1839	Yes
18	Rhob	1879	0.400	0.1877	Yes
19	Cyld	2082	0.376	0.1829	Yes
20	Hmgb2	2128	0.372	0.1908	Yes
21	Sptan1	2225	0.360	0.1942	Yes
22	Eno2	2268	0.355	0.2018	Yes
23	Ccnd1	2615	0.318	0.1835	Yes
24	Ctnnb1	2682	0.312	0.1878	Yes
25	Ifngr1	2710	0.309	0.1952	Yes
26	Il18	2805	0.298	0.1968	Yes
27	Tspo	2811	0.297	0.2057	Yes
28	App	2858	0.293	0.2110	Yes
29	Wee1	3050	0.273	0.2040	Yes
30	Dnajc3	3064	0.272	0.2114	Yes
31	Bcl2l1	3078	0.271	0.2188	Yes
32	Pea15a	3120	0.267	0.2237	Yes
33	Birc3	3421	0.242	0.2067	No
34	Pdcd4	3587	0.226	0.2003	No
35	Ebp	3636	0.224	0.2034	No
36	Slc20a1	3866	0.208	0.1911	No
37	Ier3	3911	0.204	0.1939	No
38	Casp6	3968	0.201	0.1956	No
39	Gpx4	4144	0.185	0.1871	No
40	Ppt1	4176	0.182	0.1902	No
41	Bmf	4200	0.180	0.1939	No
42	Casp4	4249	0.176	0.1955	No
43	Bnip3l	4293	0.172	0.1974	No
44	Ccnd2	4649	0.146	0.1729	No
45	Bcl2l2	4686	0.143	0.1744	No
46	Isg20	4803	0.134	0.1691	No
47	Dnaja1	4850	0.130	0.1694	No
48	Txnip	4947	0.123	0.1654	No
49	Jun	5539	0.079	0.1196	No
50	Rhot2	5679	0.070	0.1105	No
51	Vdac2	5723	0.067	0.1090	No
52	Bgn	5739	0.066	0.1099	No
53	Igf2r	5802	0.061	0.1067	No
54	Ppp3r1	5952	0.051	0.0961	No
55	Sod1	5979	0.048	0.0955	No
56	Ddit3	6075	0.041	0.0890	No
57	Irf1	6146	0.036	0.0845	No
58	H1f0	6186	0.034	0.0823	No
59	Add1	6540	0.010	0.0538	No
60	Cflar	6969	-0.014	0.0193	No
61	Rela	7113	-0.024	0.0084	No
62	Erbb3	7173	-0.028	0.0044	No
63	Psen2	7244	-0.034	-0.0002	No
64	Sat1	7257	-0.034	-0.0001	No
65	Casp8	7291	-0.037	-0.0017	No
66	Bax	7409	-0.045	-0.0098	No
67	Gch1	7420	-0.046	-0.0092	No
68	Smad7	7469	-0.049	-0.0116	No
69	Bcap31	7554	-0.056	-0.0167	No
70	Dnm1l	7558	-0.056	-0.0152	No
71	Retsat	7603	-0.059	-0.0170	No
72	Dap	7668	-0.064	-0.0202	No
73	Diablo	7671	-0.064	-0.0184	No
74	Gpx3	7682	-0.065	-0.0172	No
75	Cd38	7868	-0.079	-0.0298	No
76	Rock1	7869	-0.079	-0.0274	No
77	Plcb2	7927	-0.083	-0.0295	No
78	Madd	8058	-0.094	-0.0371	No
79	Rnasel	8164	-0.101	-0.0426	No
80	Rara	8316	-0.112	-0.0514	No
81	Gsr	8340	-0.114	-0.0498	No
82	Pak1	8506	-0.126	-0.0593	No
83	Ifitm3	8568	-0.131	-0.0602	No
84	Ptk2	8642	-0.135	-0.0619	No
85	Dffa	8785	-0.145	-0.0690	No
86	Pdgfrb	8928	-0.156	-0.0758	No
87	Timp2	8963	-0.160	-0.0736	No
88	Bid	9368	-0.192	-0.1006	No
89	F2r	9554	-0.207	-0.1092	No
90	Fdxr	9603	-0.211	-0.1066	No
91	Lmna	9685	-0.216	-0.1065	No
92	Casp2	9805	-0.227	-0.1091	No
93	Hgf	9890	-0.235	-0.1087	No
94	Tgfbr3	9943	-0.241	-0.1054	No
95	Sqstm1	10179	-0.262	-0.1164	No
96	Clu	10207	-0.265	-0.1104	No
97	Tnfsf10	10341	-0.277	-0.1126	No
98	Mmp2	10459	-0.288	-0.1132	No
99	Sc5d	10531	-0.295	-0.1098	No
100	Mgmt	10545	-0.297	-0.1016	No
101	Cdc25b	10553	-0.298	-0.0929	No
102	Etf1	10695	-0.314	-0.0946	No
103	Casp1	10726	-0.317	-0.0871	No
104	Nefh	10821	-0.328	-0.0846	No
105	Xiap	10944	-0.341	-0.0839	No
106	Sod2	11116	-0.363	-0.0866	No
107	Fas	11193	-0.374	-0.0812	No
108	Gpx1	11755	-0.476	-0.1121	No
109	Casp3	11793	-0.483	-0.1001	No
110	Tap1	11800	-0.485	-0.0855	No
111	Crebbp	11810	-0.488	-0.0710	No
112	Casp7	11848	-0.495	-0.0586	No
113	Satb1	11871	-0.500	-0.0448	No
114	Brca1	11935	-0.521	-0.0337	No
115	Bcl2l11	11957	-0.530	-0.0189	No
116	Psen1	11968	-0.533	-0.0031	No
117	Cd44	11972	-0.534	0.0133	No
118	Krt18	12118	-0.596	0.0200	No