Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group1_versus_Group3.HSC_Pheno.cls#Group1_versus_Group3_repos
Phenotype	HSC_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	0
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	0.3272496
Normalized Enrichment Score (NES)	1.3231199
Nominal p-value	0.10970464
FDR q-value	0.5887597
FWER p-Value	0.767

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Per1	37	1.181	0.0255	Yes
2	Rhob	85	1.009	0.0459	Yes
3	Junb	100	0.977	0.0683	Yes
4	Plk2	102	0.976	0.0918	Yes
5	Dnajb4	113	0.943	0.1137	Yes
6	Irf1	161	0.874	0.1309	Yes
7	Csf1	220	0.799	0.1455	Yes
8	Ppp1r15a	282	0.760	0.1588	Yes
9	Maff	311	0.746	0.1745	Yes
10	Bcl3	489	0.637	0.1754	Yes
11	Pde4b	510	0.625	0.1888	Yes
12	Mcl1	649	0.579	0.1915	Yes
13	Klf9	655	0.577	0.2050	Yes
14	Jag1	848	0.529	0.2020	Yes
15	Pdlim5	858	0.526	0.2140	Yes
16	Pnrc1	859	0.526	0.2266	Yes
17	Fosb	899	0.515	0.2359	Yes
18	Zfp36	904	0.514	0.2479	Yes
19	Jun	952	0.502	0.2562	Yes
20	Birc3	1014	0.490	0.2630	Yes
21	Rnf19b	1060	0.477	0.2708	Yes
22	Sdc4	1125	0.465	0.2768	Yes
23	Fos	1149	0.460	0.2860	Yes
24	Sat1	1396	0.417	0.2760	Yes
25	Socs3	1532	0.401	0.2746	Yes
26	Plpp3	1557	0.398	0.2822	Yes
27	Trip10	1634	0.391	0.2854	Yes
28	Hbegf	1659	0.385	0.2927	Yes
29	Trib1	1671	0.385	0.3011	Yes
30	Tnfaip8	1753	0.375	0.3036	Yes
31	Klf10	1791	0.373	0.3095	Yes
32	Kdm6b	1889	0.358	0.3102	Yes
33	Ehd1	1949	0.349	0.3138	Yes
34	Nfkbia	2081	0.329	0.3110	Yes
35	Ptger4	2102	0.327	0.3173	Yes
36	Nfkbie	2164	0.321	0.3200	Yes
37	Ier2	2171	0.320	0.3272	Yes
38	Btg1	2455	0.286	0.3110	No
39	Tgif1	2566	0.275	0.3086	No
40	Birc2	2770	0.257	0.2982	No
41	Ifih1	2927	0.241	0.2913	No
42	Tsc22d1	3161	0.223	0.2776	No
43	Btg3	3296	0.210	0.2717	No
44	Zc3h12a	3338	0.208	0.2734	No
45	Pmepa1	3345	0.208	0.2779	No
46	Ccrl2	3400	0.204	0.2784	No
47	Map2k3	3425	0.203	0.2813	No
48	Plaur	3465	0.200	0.2829	No
49	Il6st	3487	0.198	0.2860	No
50	Ier5	3525	0.195	0.2877	No
51	Rela	3681	0.182	0.2794	No
52	Map3k8	3775	0.174	0.2760	No
53	Nr4a1	3802	0.172	0.2780	No
54	Snn	3850	0.167	0.2782	No
55	Panx1	3873	0.165	0.2803	No
56	Bhlhe40	3877	0.165	0.2841	No
57	Fosl2	3926	0.161	0.2840	No
58	Irs2	3962	0.158	0.2850	No
59	Dusp1	3990	0.156	0.2865	No
60	Nampt	4053	0.150	0.2851	No
61	Traf1	4159	0.142	0.2799	No
62	Abca1	4233	0.136	0.2772	No
63	Rigi	4248	0.135	0.2793	No
64	Nfe2l2	4261	0.134	0.2816	No
65	Icam1	4289	0.132	0.2826	No
66	Klf2	4556	0.111	0.2635	No
67	Gpr183	4588	0.107	0.2635	No
68	Nfkb1	4750	0.095	0.2526	No
69	Nfkb2	4809	0.091	0.2501	No
70	Eif1	4810	0.091	0.2523	No
71	Relb	4858	0.087	0.2505	No
72	Icosl	4910	0.084	0.2484	No
73	Bcl6	5039	0.074	0.2397	No
74	Nr4a2	5468	0.043	0.2057	No
75	Egr1	5480	0.042	0.2058	No
76	Slc2a3	5481	0.042	0.2069	No
77	Dusp2	5700	0.028	0.1897	No
78	Tnip1	5729	0.026	0.1880	No
79	Vegfa	6004	0.006	0.1658	No
80	Il15ra	6404	-0.018	0.1336	No
81	Klf6	6516	-0.026	0.1251	No
82	Plek	6564	-0.030	0.1220	No
83	Inhba	6598	-0.032	0.1201	No
84	Il18	6677	-0.038	0.1146	No
85	Cd44	6722	-0.040	0.1120	No
86	Ninj1	6820	-0.047	0.1052	No
87	Ccnl1	6874	-0.051	0.1021	No
88	Rcan1	7046	-0.062	0.0896	No
89	Fut4	7084	-0.064	0.0881	No
90	Sqstm1	7109	-0.066	0.0877	No
91	Marcks	7116	-0.066	0.0888	No
92	Tlr2	7380	-0.082	0.0693	No
93	Ets2	7436	-0.085	0.0668	No
94	Lamb3	7638	-0.101	0.0528	No
95	Gem	7709	-0.105	0.0496	No
96	Cebpd	7824	-0.113	0.0430	No
97	Slc16a6	7884	-0.116	0.0410	No
98	B4galt1	7949	-0.120	0.0386	No
99	Tiparp	7991	-0.123	0.0382	No
100	Clcf1	8611	-0.165	-0.0084	No
101	Tnfaip2	8700	-0.172	-0.0114	No
102	Ripk2	8766	-0.177	-0.0125	No
103	Serpinb8	8817	-0.181	-0.0122	No
104	Tank	8822	-0.181	-0.0082	No
105	Efna1	8844	-0.184	-0.0055	No
106	Tnfaip3	8893	-0.188	-0.0049	No
107	Dusp4	8912	-0.189	-0.0018	No
108	Mxd1	9031	-0.197	-0.0067	No
109	Zbtb10	9078	-0.201	-0.0056	No
110	Ier3	9098	-0.203	-0.0022	No
111	Klf4	9170	-0.209	-0.0030	No
112	Litaf	9762	-0.258	-0.0451	No
113	Myc	10070	-0.284	-0.0634	No
114	Kynu	10086	-0.285	-0.0577	No
115	Gch1	10087	-0.285	-0.0509	No
116	Atp2b1	10181	-0.294	-0.0514	No
117	Rel	10255	-0.301	-0.0501	No
118	Tnip2	10385	-0.311	-0.0531	No
119	Pfkfb3	10408	-0.314	-0.0474	No
120	Gadd45b	10506	-0.326	-0.0474	No
121	Ptpre	10514	-0.326	-0.0401	No
122	Dennd5a	10795	-0.357	-0.0544	No
123	Dram1	10808	-0.359	-0.0468	No
124	Sod2	11043	-0.392	-0.0564	No
125	Ldlr	11112	-0.403	-0.0523	No
126	Gfpt2	11180	-0.414	-0.0478	No
127	Stat5a	11219	-0.420	-0.0408	No
128	Nfat5	11237	-0.423	-0.0320	No
129	Ifngr2	11246	-0.425	-0.0224	No
130	B4galt5	11412	-0.452	-0.0250	No
131	Ifit2	11584	-0.485	-0.0273	No
132	Cflar	11620	-0.492	-0.0183	No
133	Dusp5	11810	-0.534	-0.0209	No
134	Yrdc	12000	-0.593	-0.0220	No
135	Ccnd1	12089	-0.635	-0.0139	No
136	Tap1	12173	-0.687	-0.0041	No
137	Smad3	12287	-0.813	0.0062	No