| Dataset | HSC.HSC_Pheno.cls#Group1_versus_Group3.HSC_Pheno.cls#Group1_versus_Group3_repos |
| Phenotype | HSC_Pheno.cls#Group1_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | -0.24788663 |
| Normalized Enrichment Score (NES) | -1.0719837 |
| Nominal p-value | 0.30604288 |
| FDR q-value | 0.8747676 |
| FWER p-Value | 0.995 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Nxt1 | 252 | 0.777 | 0.0045 | No |
| 2 | Pgr | 342 | 0.725 | 0.0206 | No |
| 3 | Cyp26b1 | 440 | 0.667 | 0.0342 | No |
| 4 | Ptpn6 | 462 | 0.649 | 0.0534 | No |
| 5 | Gfus | 501 | 0.630 | 0.0706 | No |
| 6 | Sult2b1 | 826 | 0.536 | 0.0614 | No |
| 7 | Zfp36 | 904 | 0.514 | 0.0717 | No |
| 8 | Flnb | 925 | 0.509 | 0.0865 | No |
| 9 | Tpd52l1 | 1080 | 0.475 | 0.0892 | No |
| 10 | Rabep1 | 1086 | 0.474 | 0.1041 | No |
| 11 | Fos | 1149 | 0.460 | 0.1139 | No |
| 12 | Prkar2b | 1174 | 0.456 | 0.1266 | No |
| 13 | Dnajc12 | 1310 | 0.428 | 0.1294 | No |
| 14 | Plaat3 | 1572 | 0.397 | 0.1209 | No |
| 15 | Xbp1 | 1638 | 0.390 | 0.1282 | No |
| 16 | Nab2 | 1911 | 0.354 | 0.1174 | No |
| 17 | Dynlt3 | 1917 | 0.354 | 0.1284 | No |
| 18 | Tspan13 | 1953 | 0.348 | 0.1368 | No |
| 19 | Batf | 2172 | 0.320 | 0.1293 | No |
| 20 | Elovl5 | 2306 | 0.305 | 0.1283 | No |
| 21 | Igfbp4 | 2451 | 0.287 | 0.1258 | No |
| 22 | Fkbp4 | 2673 | 0.265 | 0.1163 | No |
| 23 | Blvrb | 3054 | 0.229 | 0.0927 | No |
| 24 | Myof | 3061 | 0.228 | 0.0995 | No |
| 25 | Frk | 3167 | 0.222 | 0.0981 | No |
| 26 | Btg3 | 3296 | 0.210 | 0.0945 | No |
| 27 | Siah2 | 3458 | 0.201 | 0.0878 | No |
| 28 | Il6st | 3487 | 0.198 | 0.0919 | No |
| 29 | Scnn1a | 3770 | 0.174 | 0.0745 | No |
| 30 | Fkbp5 | 4039 | 0.152 | 0.0575 | No |
| 31 | Llgl2 | 4086 | 0.148 | 0.0585 | No |
| 32 | Farp1 | 4136 | 0.144 | 0.0592 | No |
| 33 | Mocs2 | 4252 | 0.135 | 0.0541 | No |
| 34 | Jak2 | 4710 | 0.098 | 0.0200 | No |
| 35 | Itpk1 | 4795 | 0.092 | 0.0161 | No |
| 36 | Lsr | 5103 | 0.069 | -0.0067 | No |
| 37 | Nrip1 | 5449 | 0.045 | -0.0334 | No |
| 38 | Ptger3 | 5560 | 0.037 | -0.0412 | No |
| 39 | Dusp2 | 5700 | 0.028 | -0.0517 | No |
| 40 | St14 | 5784 | 0.022 | -0.0577 | No |
| 41 | Stil | 5878 | 0.014 | -0.0649 | No |
| 42 | Sord | 5977 | 0.008 | -0.0726 | No |
| 43 | S100a9 | 6119 | 0.000 | -0.0841 | No |
| 44 | Isg20 | 6173 | -0.002 | -0.0884 | No |
| 45 | Celsr2 | 6190 | -0.003 | -0.0896 | No |
| 46 | Abhd2 | 6208 | -0.004 | -0.0908 | No |
| 47 | Cox6c | 6327 | -0.013 | -0.1001 | No |
| 48 | Slc22a5 | 6382 | -0.016 | -0.1039 | No |
| 49 | Etfb | 6439 | -0.021 | -0.1078 | No |
| 50 | Cdc20 | 6668 | -0.037 | -0.1252 | No |
| 51 | Fdft1 | 6716 | -0.040 | -0.1278 | No |
| 52 | Cd44 | 6722 | -0.040 | -0.1269 | No |
| 53 | Plk4 | 6800 | -0.045 | -0.1317 | No |
| 54 | Hspa4l | 6879 | -0.051 | -0.1365 | No |
| 55 | Opn3 | 6917 | -0.054 | -0.1377 | No |
| 56 | Rps6ka2 | 6982 | -0.058 | -0.1411 | No |
| 57 | Top2a | 7036 | -0.061 | -0.1434 | No |
| 58 | Jak1 | 7224 | -0.072 | -0.1564 | No |
| 59 | Slc24a3 | 7522 | -0.091 | -0.1777 | No |
| 60 | Tob1 | 7584 | -0.096 | -0.1795 | No |
| 61 | Dnajc1 | 7754 | -0.108 | -0.1898 | No |
| 62 | Anxa9 | 7869 | -0.115 | -0.1954 | No |
| 63 | Tjp3 | 8104 | -0.131 | -0.2103 | No |
| 64 | Large1 | 8195 | -0.137 | -0.2132 | No |
| 65 | Plxnb1 | 8372 | -0.150 | -0.2228 | No |
| 66 | Mettl3 | 8540 | -0.160 | -0.2312 | No |
| 67 | Xrcc3 | 8547 | -0.160 | -0.2266 | No |
| 68 | Ncor2 | 8770 | -0.178 | -0.2389 | No |
| 69 | Tiam1 | 8814 | -0.181 | -0.2366 | No |
| 70 | Aldh3a2 | 8924 | -0.190 | -0.2394 | No |
| 71 | Rnaseh2a | 9029 | -0.197 | -0.2415 | Yes |
| 72 | Ptges | 9087 | -0.202 | -0.2397 | Yes |
| 73 | Slc16a1 | 9107 | -0.203 | -0.2347 | Yes |
| 74 | Cd9 | 9161 | -0.208 | -0.2323 | Yes |
| 75 | Klf4 | 9170 | -0.209 | -0.2262 | Yes |
| 76 | Slc26a2 | 9286 | -0.216 | -0.2286 | Yes |
| 77 | Ass1 | 9418 | -0.228 | -0.2320 | Yes |
| 78 | Atp2b4 | 9433 | -0.229 | -0.2257 | Yes |
| 79 | Chpt1 | 9498 | -0.235 | -0.2234 | Yes |
| 80 | Slc7a5 | 9549 | -0.238 | -0.2198 | Yes |
| 81 | Dhcr7 | 9627 | -0.246 | -0.2181 | Yes |
| 82 | Pdcd4 | 9652 | -0.248 | -0.2121 | Yes |
| 83 | Dcxr | 9710 | -0.253 | -0.2086 | Yes |
| 84 | Cdc6 | 9812 | -0.261 | -0.2084 | Yes |
| 85 | Cish | 9925 | -0.271 | -0.2088 | Yes |
| 86 | Amfr | 9991 | -0.276 | -0.2052 | Yes |
| 87 | Aff1 | 10053 | -0.283 | -0.2011 | Yes |
| 88 | Unc13b | 10160 | -0.292 | -0.2003 | Yes |
| 89 | Myb | 10177 | -0.293 | -0.1922 | Yes |
| 90 | Slc2a8 | 10400 | -0.313 | -0.2002 | Yes |
| 91 | Slc29a1 | 10716 | -0.348 | -0.2147 | Yes |
| 92 | Ugdh | 10931 | -0.376 | -0.2200 | Yes |
| 93 | Abca3 | 11199 | -0.416 | -0.2284 | Yes |
| 94 | Bag1 | 11337 | -0.438 | -0.2254 | Yes |
| 95 | Fgfr3 | 11606 | -0.489 | -0.2316 | Yes |
| 96 | Gins2 | 11628 | -0.493 | -0.2174 | Yes |
| 97 | Ppif | 11691 | -0.506 | -0.2061 | Yes |
| 98 | Rab31 | 11699 | -0.507 | -0.1903 | Yes |
| 99 | Snx10 | 11702 | -0.508 | -0.1741 | Yes |
| 100 | Arl3 | 11716 | -0.510 | -0.1588 | Yes |
| 101 | Rbbp8 | 11822 | -0.536 | -0.1500 | Yes |
| 102 | Kcnk5 | 11882 | -0.552 | -0.1370 | Yes |
| 103 | Idh2 | 11920 | -0.565 | -0.1219 | Yes |
| 104 | Bcl2 | 11943 | -0.574 | -0.1052 | Yes |
| 105 | Car2 | 12048 | -0.612 | -0.0939 | Yes |
| 106 | Add3 | 12052 | -0.614 | -0.0744 | Yes |
| 107 | Ccnd1 | 12089 | -0.635 | -0.0568 | Yes |
| 108 | Impa2 | 12120 | -0.657 | -0.0381 | Yes |
| 109 | Dlg5 | 12238 | -0.751 | -0.0234 | Yes |
| 110 | Scarb1 | 12350 | -1.041 | 0.0011 | Yes |

