| Dataset | HSC.HSC_Pheno.cls#Group1_versus_Group3.HSC_Pheno.cls#Group1_versus_Group3_repos |
| Phenotype | HSC_Pheno.cls#Group1_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.26575688 |
| Normalized Enrichment Score (NES) | -1.187295 |
| Nominal p-value | 0.20683111 |
| FDR q-value | 0.6928126 |
| FWER p-Value | 0.954 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Nxt1 | 252 | 0.777 | 0.0012 | No |
| 2 | Nadsyn1 | 291 | 0.756 | 0.0193 | No |
| 3 | Pgr | 342 | 0.725 | 0.0356 | No |
| 4 | Cyp26b1 | 440 | 0.667 | 0.0463 | No |
| 5 | Tgif2 | 471 | 0.643 | 0.0619 | No |
| 6 | Mlph | 738 | 0.557 | 0.0558 | No |
| 7 | Slc1a1 | 742 | 0.555 | 0.0711 | No |
| 8 | Endod1 | 747 | 0.555 | 0.0864 | No |
| 9 | Sult2b1 | 826 | 0.536 | 0.0950 | No |
| 10 | Flnb | 925 | 0.509 | 0.1013 | No |
| 11 | Tpd52l1 | 1080 | 0.475 | 0.1020 | No |
| 12 | Fos | 1149 | 0.460 | 0.1093 | No |
| 13 | Plaat3 | 1572 | 0.397 | 0.0860 | No |
| 14 | Xbp1 | 1638 | 0.390 | 0.0916 | No |
| 15 | Mybl1 | 1755 | 0.375 | 0.0927 | No |
| 16 | Klf10 | 1791 | 0.373 | 0.1003 | No |
| 17 | Dynlt3 | 1917 | 0.354 | 0.1000 | No |
| 18 | Deptor | 1964 | 0.346 | 0.1059 | No |
| 19 | Igf1r | 2010 | 0.340 | 0.1118 | No |
| 20 | Gab2 | 2018 | 0.339 | 0.1207 | No |
| 21 | Snx24 | 2070 | 0.332 | 0.1259 | No |
| 22 | Inpp5f | 2074 | 0.331 | 0.1349 | No |
| 23 | Elovl5 | 2306 | 0.305 | 0.1246 | No |
| 24 | Igfbp4 | 2451 | 0.287 | 0.1209 | No |
| 25 | Adcy9 | 2475 | 0.283 | 0.1269 | No |
| 26 | Fkbp4 | 2673 | 0.265 | 0.1183 | No |
| 27 | Blvrb | 3054 | 0.229 | 0.0937 | No |
| 28 | Myof | 3061 | 0.228 | 0.0996 | No |
| 29 | Slc19a2 | 3136 | 0.224 | 0.0998 | No |
| 30 | Frk | 3167 | 0.222 | 0.1036 | No |
| 31 | Mpped2 | 3198 | 0.219 | 0.1073 | No |
| 32 | Siah2 | 3458 | 0.201 | 0.0917 | No |
| 33 | Med24 | 3466 | 0.200 | 0.0968 | No |
| 34 | Il6st | 3487 | 0.198 | 0.1007 | No |
| 35 | Scnn1a | 3770 | 0.174 | 0.0826 | No |
| 36 | Bhlhe40 | 3877 | 0.165 | 0.0785 | No |
| 37 | Isg20l2 | 3913 | 0.162 | 0.0802 | No |
| 38 | Fkbp5 | 4039 | 0.152 | 0.0742 | No |
| 39 | Rhobtb3 | 4089 | 0.147 | 0.0744 | No |
| 40 | Farp1 | 4136 | 0.144 | 0.0746 | No |
| 41 | Mindy1 | 4532 | 0.113 | 0.0455 | No |
| 42 | Tbc1d30 | 4551 | 0.111 | 0.0472 | No |
| 43 | Jak2 | 4710 | 0.098 | 0.0370 | No |
| 44 | Asb13 | 4781 | 0.093 | 0.0339 | No |
| 45 | Itpk1 | 4795 | 0.092 | 0.0354 | No |
| 46 | Tmem164 | 5241 | 0.059 | 0.0007 | No |
| 47 | Lrig1 | 5402 | 0.048 | -0.0110 | No |
| 48 | Nrip1 | 5449 | 0.045 | -0.0135 | No |
| 49 | Syngr1 | 5538 | 0.039 | -0.0196 | No |
| 50 | Rara | 5752 | 0.024 | -0.0363 | No |
| 51 | Ablim1 | 5810 | 0.020 | -0.0404 | No |
| 52 | Gja1 | 5967 | 0.009 | -0.0529 | No |
| 53 | Thsd4 | 6039 | 0.003 | -0.0586 | No |
| 54 | Fasn | 6047 | 0.003 | -0.0591 | No |
| 55 | Celsr2 | 6190 | -0.003 | -0.0706 | No |
| 56 | Abhd2 | 6208 | -0.004 | -0.0719 | No |
| 57 | Slc22a5 | 6382 | -0.016 | -0.0856 | No |
| 58 | Cant1 | 6628 | -0.034 | -0.1046 | No |
| 59 | Med13l | 6687 | -0.038 | -0.1083 | No |
| 60 | Retreg1 | 6697 | -0.039 | -0.1080 | No |
| 61 | Fdft1 | 6716 | -0.040 | -0.1083 | No |
| 62 | Cd44 | 6722 | -0.040 | -0.1076 | No |
| 63 | Kazn | 6797 | -0.045 | -0.1124 | No |
| 64 | Opn3 | 6917 | -0.054 | -0.1206 | No |
| 65 | Rps6ka2 | 6982 | -0.058 | -0.1242 | No |
| 66 | Dhrs3 | 7097 | -0.065 | -0.1317 | No |
| 67 | Dlc1 | 7128 | -0.067 | -0.1322 | No |
| 68 | Tgm2 | 7210 | -0.071 | -0.1369 | No |
| 69 | Slc24a3 | 7522 | -0.091 | -0.1597 | No |
| 70 | Tob1 | 7584 | -0.096 | -0.1620 | No |
| 71 | Mybbp1a | 7677 | -0.103 | -0.1666 | No |
| 72 | Slc2a1 | 7747 | -0.108 | -0.1692 | No |
| 73 | Anxa9 | 7869 | -0.115 | -0.1759 | No |
| 74 | B4galt1 | 7949 | -0.120 | -0.1790 | No |
| 75 | Tiparp | 7991 | -0.123 | -0.1789 | No |
| 76 | Tjp3 | 8104 | -0.131 | -0.1844 | No |
| 77 | Sh3bp5 | 8156 | -0.135 | -0.1847 | No |
| 78 | Pex11a | 8189 | -0.137 | -0.1835 | No |
| 79 | Podxl | 8421 | -0.152 | -0.1981 | No |
| 80 | Sec14l2 | 8546 | -0.160 | -0.2038 | No |
| 81 | Ncor2 | 8770 | -0.178 | -0.2170 | No |
| 82 | Tiam1 | 8814 | -0.181 | -0.2154 | No |
| 83 | Ptges | 9087 | -0.202 | -0.2320 | No |
| 84 | Slc16a1 | 9107 | -0.203 | -0.2279 | No |
| 85 | Klf4 | 9170 | -0.209 | -0.2271 | No |
| 86 | Rab17 | 9177 | -0.209 | -0.2217 | No |
| 87 | Slc26a2 | 9286 | -0.216 | -0.2245 | No |
| 88 | Chpt1 | 9498 | -0.235 | -0.2351 | No |
| 89 | Elf1 | 9544 | -0.238 | -0.2321 | No |
| 90 | Slc7a5 | 9549 | -0.238 | -0.2257 | No |
| 91 | Dhcr7 | 9627 | -0.246 | -0.2251 | No |
| 92 | Nav2 | 9752 | -0.256 | -0.2281 | No |
| 93 | Cbfa2t3 | 9761 | -0.257 | -0.2215 | No |
| 94 | Celsr1 | 9823 | -0.261 | -0.2192 | No |
| 95 | Ar | 9840 | -0.262 | -0.2131 | No |
| 96 | Ugcg | 9855 | -0.264 | -0.2069 | No |
| 97 | Cish | 9925 | -0.271 | -0.2049 | No |
| 98 | Amfr | 9991 | -0.276 | -0.2025 | No |
| 99 | Aff1 | 10053 | -0.283 | -0.1995 | No |
| 100 | Myc | 10070 | -0.284 | -0.1928 | No |
| 101 | Myb | 10177 | -0.293 | -0.1933 | No |
| 102 | Rrp12 | 10232 | -0.299 | -0.1893 | No |
| 103 | Mast4 | 10496 | -0.324 | -0.2017 | No |
| 104 | Krt18 | 10556 | -0.331 | -0.1972 | No |
| 105 | Abca3 | 11199 | -0.416 | -0.2380 | No |
| 106 | Bag1 | 11337 | -0.438 | -0.2369 | No |
| 107 | Ppif | 11691 | -0.506 | -0.2516 | Yes |
| 108 | Rab31 | 11699 | -0.507 | -0.2379 | Yes |
| 109 | Arl3 | 11716 | -0.510 | -0.2249 | Yes |
| 110 | P2ry2 | 11744 | -0.517 | -0.2126 | Yes |
| 111 | Rbbp8 | 11822 | -0.536 | -0.2039 | Yes |
| 112 | Slc37a1 | 11851 | -0.545 | -0.1909 | Yes |
| 113 | Kcnk5 | 11882 | -0.552 | -0.1778 | Yes |
| 114 | Slc39a6 | 11921 | -0.565 | -0.1651 | Yes |
| 115 | Bcl2 | 11943 | -0.574 | -0.1507 | Yes |
| 116 | Svil | 11947 | -0.575 | -0.1348 | Yes |
| 117 | Abat | 11959 | -0.577 | -0.1196 | Yes |
| 118 | Ttc39a | 12010 | -0.598 | -0.1069 | Yes |
| 119 | Add3 | 12052 | -0.614 | -0.0930 | Yes |
| 120 | Ccnd1 | 12089 | -0.635 | -0.0781 | Yes |
| 121 | Unc119 | 12240 | -0.754 | -0.0693 | Yes |
| 122 | Kdm4b | 12249 | -0.764 | -0.0485 | Yes |
| 123 | Akap1 | 12346 | -1.015 | -0.0279 | Yes |
| 124 | Scarb1 | 12350 | -1.041 | 0.0011 | Yes |

