Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group1_versus_Group3.HSC_Pheno.cls#Group1_versus_Group3_repos
Phenotype	HSC_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_COMPLEMENT
Enrichment Score (ES)	-0.225736
Normalized Enrichment Score (NES)	-1.0422076
Nominal p-value	0.34393638
FDR q-value	0.6721519
FWER p-Value	0.996

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Rnf4	8	1.520	0.0419	No
2	Irf1	161	0.874	0.0539	No
3	Ctsl	286	0.759	0.0650	No
4	Maff	311	0.746	0.0839	No
5	Grb2	475	0.641	0.0886	No
6	Cpm	519	0.623	0.1025	No
7	Was	603	0.592	0.1122	No
8	Pdp1	635	0.583	0.1260	No
9	Akap10	874	0.522	0.1212	No
10	Lap3	946	0.503	0.1295	No
11	Gnai3	994	0.494	0.1394	No
12	Casp4	1018	0.489	0.1512	No
13	Ppp4c	1047	0.480	0.1624	No
14	Dgkh	1075	0.476	0.1735	No
15	Cr2	1133	0.463	0.1818	No
16	Lta4h	1259	0.436	0.1838	No
17	F5	1397	0.417	0.1842	No
18	Pim1	1834	0.365	0.1589	No
19	Ehd1	1949	0.349	0.1593	No
20	Lipa	2250	0.312	0.1435	No
21	Prdm4	2294	0.307	0.1486	No
22	Atox1	2366	0.298	0.1511	No
23	Ctsb	2508	0.279	0.1474	No
24	Mmp14	2509	0.279	0.1552	No
25	Raf1	2676	0.265	0.1491	No
26	Casp9	2940	0.239	0.1343	No
27	Gpd2	2948	0.239	0.1404	No
28	Zeb1	3057	0.229	0.1380	No
29	Rabif	3193	0.220	0.1331	No
30	Adam9	3204	0.219	0.1384	No
31	Pclo	3238	0.216	0.1417	No
32	Pik3r5	3306	0.209	0.1421	No
33	Plaur	3465	0.200	0.1348	No
34	Sirt6	3560	0.192	0.1325	No
35	Dock10	4403	0.124	0.0672	No
36	Usp8	4461	0.119	0.0659	No
37	Cd46	4577	0.108	0.0596	No
38	Rhog	4617	0.105	0.0593	No
39	Psen1	4648	0.103	0.0597	No
40	Brpf3	4650	0.103	0.0625	No
41	Jak2	4710	0.098	0.0605	No
42	Rbsn	4818	0.090	0.0542	No
43	Pik3ca	4955	0.080	0.0454	No
44	Gng2	5170	0.064	0.0297	No
45	Spock2	5199	0.062	0.0291	No
46	Gnai2	5202	0.061	0.0307	No
47	Sh2b3	5614	0.033	-0.0020	No
48	Ctso	5620	0.033	-0.0014	No
49	Itgam	5886	0.013	-0.0227	No
50	S100a9	6119	0.000	-0.0417	No
51	Kif2a	6160	-0.001	-0.0449	No
52	Prkcd	6204	-0.004	-0.0483	No
53	Rce1	6286	-0.010	-0.0546	No
54	Casp3	6390	-0.017	-0.0626	No
55	Lcp2	6492	-0.025	-0.0701	No
56	Plek	6564	-0.030	-0.0751	No
57	Vcpip1	6824	-0.047	-0.0949	No
58	Dgkg	6829	-0.047	-0.0939	No
59	Prep	6973	-0.058	-0.1040	No
60	Lck	7025	-0.061	-0.1065	No
61	Csrp1	7047	-0.062	-0.1065	No
62	Lrp1	7107	-0.066	-0.1094	No
63	Pdgfb	7338	-0.080	-0.1260	No
64	Usp15	7348	-0.080	-0.1245	No
65	Usp16	7393	-0.083	-0.1258	No
66	Gata3	7563	-0.094	-0.1369	No
67	Ctsh	7743	-0.107	-0.1485	No
68	Gp9	7853	-0.115	-0.1542	No
69	Usp14	7985	-0.122	-0.1615	No
70	Ctsc	7999	-0.123	-0.1591	No
71	F8	8041	-0.127	-0.1589	No
72	Me1	8060	-0.128	-0.1568	No
73	Fdx1	8094	-0.130	-0.1559	No
74	Timp2	8415	-0.152	-0.1778	No
75	Ppp2cb	8435	-0.153	-0.1750	No
76	Clu	8746	-0.176	-0.1954	No
77	Tnfaip3	8893	-0.188	-0.2021	No
78	Lamp2	8952	-0.192	-0.2015	No
79	Prss36	9002	-0.195	-0.2000	No
80	C2	9176	-0.209	-0.2083	No
81	Pik3cg	9235	-0.212	-0.2071	No
82	Pla2g4a	9337	-0.220	-0.2092	No
83	Irf7	9377	-0.224	-0.2061	No
84	Psmb9	9567	-0.241	-0.2148	No
85	Cblb	9653	-0.248	-0.2148	No
86	Stx4a	9744	-0.256	-0.2150	No
87	Ctss	9790	-0.260	-0.2114	No
88	Dock4	9955	-0.274	-0.2172	No
89	Hspa5	10061	-0.284	-0.2178	Yes
90	Kynu	10086	-0.285	-0.2118	Yes
91	Pfn1	10133	-0.288	-0.2075	Yes
92	Gmfb	10191	-0.294	-0.2039	Yes
93	Calm3	10328	-0.306	-0.2064	Yes
94	Src	10333	-0.307	-0.1982	Yes
95	S100a13	10352	-0.309	-0.1910	Yes
96	Dock9	10371	-0.310	-0.1838	Yes
97	Msrb1	10463	-0.319	-0.1823	Yes
98	Cpq	10756	-0.352	-0.1963	Yes
99	Dusp6	10778	-0.355	-0.1880	Yes
100	Casp7	10960	-0.380	-0.1922	Yes
101	Plscr1	11023	-0.390	-0.1863	Yes
102	Irf2	11089	-0.399	-0.1805	Yes
103	Prcp	11380	-0.446	-0.1917	Yes
104	Lyn	11381	-0.446	-0.1792	Yes
105	Gca	11489	-0.467	-0.1749	Yes
106	Gnb2	11498	-0.468	-0.1624	Yes
107	Ctsd	11512	-0.470	-0.1503	Yes
108	Dyrk2	11565	-0.482	-0.1411	Yes
109	Xpnpep1	11587	-0.485	-0.1292	Yes
110	Col4a2	11621	-0.492	-0.1182	Yes
111	Dusp5	11810	-0.534	-0.1186	Yes
112	Calm1	11879	-0.552	-0.1087	Yes
113	Car2	12048	-0.612	-0.1053	Yes
114	Casp1	12127	-0.661	-0.0932	Yes
115	Dpp4	12135	-0.663	-0.0752	Yes
116	Gnb4	12139	-0.665	-0.0569	Yes
117	Kcnip3	12284	-0.807	-0.0460	Yes
118	Fyn	12322	-0.890	-0.0242	Yes
119	Anxa5	12341	-0.980	0.0018	Yes