Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	HSC.HSC_Pheno.cls#Group1_versus_Group2.HSC_Pheno.cls#Group1_versus_Group2_repos
Phenotype	HSC_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.29597712
Normalized Enrichment Score (NES)	-1.2012868
Nominal p-value	0.16945606
FDR q-value	0.49647897
FWER p-Value	0.909

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Sdc4	39	1.084	0.0463	No
2	Thbs1	775	0.558	0.0119	No
3	Fuca1	812	0.549	0.0340	No
4	Eno2	829	0.542	0.0574	No
5	Col1a2	1130	0.476	0.0547	No
6	Fbn1	1223	0.463	0.0683	No
7	Col16a1	1635	0.405	0.0533	No
8	Notch2	1681	0.398	0.0678	No
9	Plod1	1806	0.379	0.0751	No
10	Igfbp4	1947	0.361	0.0801	No
11	Vcan	2141	0.339	0.0799	No
12	Vegfa	2165	0.335	0.0933	No
13	Itgb1	2477	0.299	0.0816	No
14	Glipr1	2871	0.259	0.0615	No
15	Mylk	2919	0.255	0.0692	No
16	Gja1	3092	0.237	0.0660	No
17	Copa	3101	0.236	0.0762	No
18	Mmp14	3109	0.235	0.0863	No
19	Fermt2	4141	0.152	0.0093	No
20	Basp1	4153	0.151	0.0153	No
21	Tpm2	4415	0.130	-0.0001	No
22	Sgcb	4482	0.125	0.0003	No
23	Timp3	4788	0.104	-0.0198	No
24	Itga5	4808	0.103	-0.0167	No
25	Tnfaip3	4895	0.098	-0.0192	No
26	Qsox1	4915	0.097	-0.0163	No
27	Lgals1	5088	0.084	-0.0265	No
28	Tgfbi	5287	0.070	-0.0394	No
29	P3h1	5492	0.056	-0.0535	No
30	Vim	5571	0.051	-0.0575	No
31	Calu	5670	0.044	-0.0635	No
32	Magee1	5685	0.043	-0.0626	No
33	Gpc1	5696	0.043	-0.0615	No
34	Sfrp1	5708	0.042	-0.0605	No
35	Lamc1	5736	0.040	-0.0609	No
36	Pmepa1	5875	0.029	-0.0708	No
37	Wipf1	5905	0.026	-0.0720	No
38	Gem	6200	0.006	-0.0956	No
39	Sntb1	6360	-0.004	-0.1084	No
40	Plod2	6413	-0.008	-0.1123	No
41	Rhob	6547	-0.016	-0.1224	No
42	Abi3bp	6622	-0.021	-0.1275	No
43	Bmp1	6691	-0.024	-0.1319	No
44	Cd44	6696	-0.025	-0.1311	No
45	Mcm7	6915	-0.041	-0.1470	No
46	Lrp1	7273	-0.064	-0.1731	No
47	Tgm2	7321	-0.068	-0.1738	No
48	Tgfb1	7357	-0.071	-0.1735	No
49	Itga2	7361	-0.071	-0.1705	No
50	Ecm2	7454	-0.077	-0.1744	No
51	Fstl1	7703	-0.095	-0.1903	No
52	Capg	7833	-0.104	-0.1961	No
53	Anpep	7845	-0.105	-0.1922	No
54	Gadd45b	8218	-0.129	-0.2166	No
55	Fzd8	8426	-0.144	-0.2269	No
56	Bgn	8798	-0.170	-0.2493	No
57	Pdgfrb	8818	-0.172	-0.2431	No
58	Sat1	9121	-0.194	-0.2588	No
59	Jun	9330	-0.210	-0.2662	No
60	Inhba	9510	-0.225	-0.2705	No
61	Plaur	9560	-0.229	-0.2640	No
62	Ecm1	9697	-0.241	-0.2641	No
63	Tpm4	9817	-0.249	-0.2624	No
64	Colgalt1	9935	-0.258	-0.2602	No
65	Lama3	9977	-0.261	-0.2516	No
66	Cap2	10523	-0.313	-0.2817	Yes
67	Ppib	10561	-0.317	-0.2702	Yes
68	Fas	10624	-0.323	-0.2606	Yes
69	Fap	10639	-0.324	-0.2469	Yes
70	Pvr	10677	-0.329	-0.2349	Yes
71	Itgav	10846	-0.351	-0.2326	Yes
72	Mmp2	11057	-0.378	-0.2324	Yes
73	Cadm1	11203	-0.396	-0.2262	Yes
74	Slit2	11224	-0.399	-0.2096	Yes
75	Itgb3	11227	-0.400	-0.1915	Yes
76	Vegfc	11241	-0.402	-0.1742	Yes
77	Plod3	11407	-0.432	-0.1679	Yes
78	Tpm1	11441	-0.438	-0.1507	Yes
79	Flna	11477	-0.442	-0.1333	Yes
80	Emp3	11682	-0.482	-0.1280	Yes
81	Col4a1	11819	-0.512	-0.1157	Yes
82	Dst	11935	-0.557	-0.0996	Yes
83	Serpinh1	12066	-0.612	-0.0823	Yes
84	Tgfbr3	12181	-0.696	-0.0598	Yes
85	Col4a2	12217	-0.724	-0.0296	Yes
86	Il15	12319	-0.908	0.0036	Yes