Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group6_versus_Group8.GMP.neu_Pheno.cls #Group6_versus_Group8_repos
Phenotype	GMP.neu_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2502017
Normalized Enrichment Score (NES)	0.9761107
Nominal p-value	0.4923077
FDR q-value	0.8229402
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Vegfa	73	0.978	0.0207	Yes
2	Inhba	93	0.946	0.0433	Yes
3	Slit2	154	0.865	0.0618	Yes
4	Fstl3	264	0.773	0.0756	Yes
5	Col5a3	369	0.708	0.0880	Yes
6	Efemp2	572	0.640	0.0938	Yes
7	Tpm2	686	0.613	0.1033	Yes
8	Vcam1	710	0.607	0.1173	Yes
9	Cap2	711	0.607	0.1324	Yes
10	Thbs2	744	0.599	0.1457	Yes
11	Ecm2	753	0.597	0.1602	Yes
12	Sat1	926	0.557	0.1654	Yes
13	Vcan	1158	0.521	0.1668	Yes
14	Adam12	1174	0.518	0.1789	Yes
15	Ecm1	1206	0.515	0.1902	Yes
16	Edil3	1387	0.491	0.1933	Yes
17	Dab2	1717	0.458	0.1882	Yes
18	Fuca1	1809	0.445	0.1947	Yes
19	Mylk	2040	0.421	0.1936	Yes
20	Col5a1	2095	0.415	0.2012	Yes
21	Htra1	2100	0.415	0.2114	Yes
22	Lamc1	2228	0.397	0.2149	Yes
23	Itgb5	2249	0.394	0.2237	Yes
24	Fbln2	2410	0.381	0.2251	Yes
25	Col1a1	2477	0.377	0.2312	Yes
26	Col12a1	2781	0.357	0.2249	Yes
27	Cald1	2832	0.355	0.2312	Yes
28	Pcolce2	3030	0.340	0.2297	Yes
29	Wipf1	3103	0.339	0.2346	Yes
30	Gpc1	3114	0.338	0.2425	Yes
31	Gm21451	3362	0.322	0.2381	Yes
32	Slc6a8	3378	0.321	0.2453	Yes
33	Dcn	3438	0.316	0.2502	Yes
34	Mmp2	3859	0.284	0.2362	No
35	Fzd8	3919	0.279	0.2401	No
36	Tnfrsf12a	3959	0.275	0.2450	No
37	Itgav	4486	0.243	0.2246	No
38	Flna	5084	0.210	0.1998	No
39	Pvr	5148	0.206	0.2018	No
40	Notch2	5185	0.204	0.2051	No
41	Col1a2	5315	0.200	0.2036	No
42	Mest	5510	0.193	0.1986	No
43	Eno2	5556	0.191	0.2011	No
44	Nid2	5686	0.189	0.1993	No
45	Tnfaip3	5956	0.173	0.1901	No
46	Tgfbi	5957	0.173	0.1944	No
47	Jun	6045	0.170	0.1943	No
48	Pcolce	6186	0.168	0.1914	No
49	Sparc	6210	0.166	0.1944	No
50	Plod3	6315	0.161	0.1932	No
51	Gem	6336	0.160	0.1962	No
52	Gadd45a	6370	0.158	0.1984	No
53	Postn	6489	0.152	0.1963	No
54	Copa	6545	0.149	0.1972	No
55	Mmp14	6563	0.148	0.2001	No
56	Timp3	6600	0.146	0.2019	No
57	Sdc1	6848	0.135	0.1928	No
58	Lama1	6939	0.132	0.1916	No
59	Tgm2	7259	0.116	0.1785	No
60	Sgcd	7355	0.112	0.1765	No
61	Col11a1	7580	0.102	0.1678	No
62	Col7a1	7661	0.099	0.1662	No
63	Lama3	7718	0.096	0.1658	No
64	Spp1	7915	0.088	0.1581	No
65	Calu	7957	0.087	0.1582	No
66	Nt5e	8212	0.077	0.1473	No
67	Thbs1	8736	0.055	0.1224	No
68	Rhob	8920	0.048	0.1144	No
69	Fap	9122	0.040	0.1053	No
70	Lama2	9183	0.038	0.1032	No
71	Tgfb1	9241	0.035	0.1012	No
72	Matn2	9445	0.027	0.0917	No
73	Il15	9513	0.024	0.0889	No
74	Slit3	9664	0.018	0.0818	No
75	Fbln5	10375	-0.003	0.0462	No
76	Itga5	10640	-0.012	0.0332	No
77	Itgb3	10934	-0.022	0.0190	No
78	Bgn	10991	-0.025	0.0168	No
79	Cadm1	11076	-0.028	0.0133	No
80	Fas	11107	-0.030	0.0125	No
81	Tpm4	11176	-0.032	0.0099	No
82	Tagln	11270	-0.036	0.0061	No
83	Ntm	11439	-0.043	-0.0013	No
84	Pmepa1	11639	-0.051	-0.0100	No
85	Fn1	11719	-0.054	-0.0126	No
86	Fbln1	11822	-0.058	-0.0163	No
87	Capg	11875	-0.061	-0.0174	No
88	Vegfc	11944	-0.064	-0.0192	No
89	Cd44	12079	-0.069	-0.0242	No
90	Lrp1	12207	-0.075	-0.0288	No
91	Qsox1	12466	-0.087	-0.0396	No
92	Plod1	12724	-0.099	-0.0500	No
93	Magee1	13024	-0.109	-0.0624	No
94	Plaur	13226	-0.119	-0.0695	No
95	Pfn2	13301	-0.122	-0.0702	No
96	Itga2	13383	-0.125	-0.0711	No
97	Serpine2	13393	-0.125	-0.0685	No
98	Comp	13444	-0.128	-0.0678	No
99	Anpep	13753	-0.141	-0.0798	No
100	Gja1	13797	-0.142	-0.0784	No
101	Glipr1	14064	-0.154	-0.0879	No
102	Abi3bp	14081	-0.155	-0.0849	No
103	Pdgfrb	14303	-0.164	-0.0919	No
104	Tnc	14433	-0.170	-0.0942	No
105	Dst	14476	-0.172	-0.0920	No
106	Sntb1	14518	-0.174	-0.0897	No
107	Sgcb	14696	-0.183	-0.0941	No
108	Itgb1	14925	-0.193	-0.1007	No
109	Myl9	14984	-0.196	-0.0988	No
110	Col4a2	15442	-0.218	-0.1163	No
111	Mcm7	16224	-0.259	-0.1492	No
112	Tpm1	16344	-0.263	-0.1486	No
113	Id2	16403	-0.266	-0.1449	No
114	Gadd45b	16482	-0.272	-0.1420	No
115	Cdh2	16814	-0.291	-0.1514	No
116	Fstl1	16869	-0.295	-0.1468	No
117	P3h1	16883	-0.295	-0.1401	No
118	Loxl1	17028	-0.304	-0.1398	No
119	Tfpi2	17245	-0.319	-0.1427	No
120	Dpysl3	17419	-0.329	-0.1432	No
121	Bmp1	17534	-0.336	-0.1405	No
122	Pdlim4	17638	-0.343	-0.1372	No
123	Cdh6	17658	-0.344	-0.1296	No
124	Plod2	17779	-0.354	-0.1268	No
125	Col4a1	18084	-0.381	-0.1326	No
126	Col5a2	18139	-0.385	-0.1257	No
127	Cdh11	18507	-0.419	-0.1337	No
128	Fgf2	18566	-0.426	-0.1260	No
129	Colgalt1	18638	-0.434	-0.1188	No
130	Thy1	18642	-0.435	-0.1081	No
131	Sfrp4	18913	-0.472	-0.1099	No
132	Basp1	19058	-0.496	-0.1048	No
133	Tgfbr3	19107	-0.505	-0.0947	No
134	Fbn1	19155	-0.515	-0.0842	No
135	Spock1	19290	-0.539	-0.0775	No
136	Igfbp4	19335	-0.550	-0.0660	No
137	Emp3	19385	-0.563	-0.0545	No
138	Vim	19425	-0.574	-0.0421	No
139	Ppib	19603	-0.637	-0.0352	No
140	Fbn2	19636	-0.651	-0.0206	No
141	Col16a1	19723	-0.686	-0.0078	No
142	Lgals1	19975	-0.923	0.0026	No