Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group3_versus_Group4.GMP.neu_Pheno.cls #Group3_versus_Group4_repos
Phenotype	GMP.neu_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_MYOGENESIS
Enrichment Score (ES)	0.24566823
Normalized Enrichment Score (NES)	1.0390921
Nominal p-value	0.38697317
FDR q-value	0.64833367
FWER p-Value	0.974

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Gsn	27	1.038	0.0278	Yes
2	Cnn3	78	0.905	0.0508	Yes
3	Chrnb1	92	0.857	0.0742	Yes
4	Ppfia4	152	0.787	0.0934	Yes
5	Reep1	210	0.736	0.1112	Yes
6	Myl6b	367	0.660	0.1220	Yes
7	Tpd52l1	405	0.643	0.1382	Yes
8	Itgb5	604	0.580	0.1445	Yes
9	Actn3	1017	0.501	0.1379	Yes
10	Stc2	1078	0.492	0.1487	Yes
11	Tsc2	1440	0.447	0.1432	Yes
12	Gadd45b	1442	0.447	0.1557	Yes
13	Sparc	1537	0.435	0.1632	Yes
14	Gpx3	1636	0.430	0.1704	Yes
15	Slc6a8	2224	0.370	0.1513	Yes
16	Fdps	2284	0.367	0.1586	Yes
17	Wwtr1	2322	0.362	0.1670	Yes
18	Tnni2	2414	0.357	0.1724	Yes
19	Tpm2	2505	0.351	0.1778	Yes
20	Bhlhe40	2612	0.345	0.1822	Yes
21	Agl	2665	0.340	0.1891	Yes
22	Myom2	2711	0.337	0.1963	Yes
23	Dtna	2754	0.334	0.2036	Yes
24	Smtn	2760	0.333	0.2127	Yes
25	Myh8	2951	0.319	0.2121	Yes
26	Ckmt2	3189	0.305	0.2088	Yes
27	Mybpc3	3268	0.304	0.2134	Yes
28	Foxo4	3355	0.296	0.2174	Yes
29	Kcnh1	3426	0.292	0.2221	Yes
30	Ptp4a3	3478	0.290	0.2277	Yes
31	Mapre3	3504	0.289	0.2346	Yes
32	Ncam1	3877	0.261	0.2233	Yes
33	Nos1	4153	0.248	0.2164	Yes
34	Syngr2	4174	0.246	0.2223	Yes
35	Nav2	4188	0.245	0.2286	Yes
36	Myh9	4248	0.242	0.2324	Yes
37	Ablim1	4306	0.238	0.2362	Yes
38	Acsl1	4380	0.234	0.2391	Yes
39	Gabarapl2	4440	0.230	0.2426	Yes
40	Fst	4599	0.226	0.2410	Yes
41	Ankrd2	4634	0.225	0.2457	Yes
42	Gnao1	5068	0.201	0.2296	No
43	Sptan1	5182	0.196	0.2294	No
44	Nqo1	5188	0.196	0.2347	No
45	Sh2b1	5263	0.193	0.2363	No
46	Actn2	5379	0.187	0.2358	No
47	Dmd	5577	0.181	0.2310	No
48	Pick1	5706	0.173	0.2294	No
49	App	5775	0.170	0.2308	No
50	Cdh13	5869	0.166	0.2308	No
51	Tpm3	6551	0.134	0.2003	No
52	Akt2	6599	0.132	0.2017	No
53	Ocel1	6623	0.131	0.2042	No
54	Cd36	6928	0.119	0.1923	No
55	Fhl1	6937	0.119	0.1952	No
56	Kcnh2	6967	0.119	0.1971	No
57	Sh3bgr	6972	0.119	0.2002	No
58	Myoz1	7000	0.119	0.2022	No
59	Hdac5	7173	0.116	0.1969	No
60	Bag1	7619	0.099	0.1773	No
61	Crat	7739	0.094	0.1739	No
62	Tagln	7772	0.092	0.1749	No
63	Cryab	8054	0.081	0.1630	No
64	Pgam2	8122	0.078	0.1619	No
65	Camk2b	8588	0.060	0.1402	No
66	Psen2	8632	0.058	0.1396	No
67	Itgb4	8769	0.053	0.1343	No
68	Ctf1	9069	0.041	0.1204	No
69	Pcx	9343	0.032	0.1076	No
70	Pde4dip	9344	0.032	0.1085	No
71	Klf5	9475	0.028	0.1027	No
72	Eif4a2	9642	0.021	0.0950	No
73	Col1a1	10250	0.000	0.0644	No
74	Prnp	10666	-0.007	0.0438	No
75	Tnnt3	10762	-0.011	0.0393	No
76	Mylk	11152	-0.024	0.0204	No
77	Bin1	11181	-0.025	0.0197	No
78	Tgfb1	11199	-0.025	0.0195	No
79	Dapk2	11292	-0.029	0.0157	No
80	Mef2c	11330	-0.031	0.0147	No
81	Myl4	11475	-0.035	0.0085	No
82	Kifc3	11516	-0.037	0.0075	No
83	Agrn	11651	-0.041	0.0019	No
84	Tnnt1	11712	-0.044	0.0001	No
85	Atp6ap1	11818	-0.047	-0.0038	No
86	Gja5	12157	-0.058	-0.0192	No
87	Sirt2	12161	-0.058	-0.0177	No
88	Gaa	12266	-0.062	-0.0212	No
89	Aplnr	12271	-0.062	-0.0196	No
90	Notch1	12345	-0.064	-0.0215	No
91	Eno3	12368	-0.065	-0.0208	No
92	Adcy9	12530	-0.071	-0.0268	No
93	Svil	12667	-0.076	-0.0315	No
94	Hbegf	12734	-0.079	-0.0326	No
95	Pdlim7	12910	-0.085	-0.0390	No
96	Dmpk	13000	-0.088	-0.0410	No
97	Erbb3	13090	-0.091	-0.0429	No
98	Rb1	13093	-0.091	-0.0405	No
99	Lpin1	13200	-0.095	-0.0431	No
100	Schip1	13502	-0.106	-0.0553	No
101	Cox7a1	13632	-0.111	-0.0587	No
102	Itgb1	13687	-0.113	-0.0582	No
103	Lama2	13867	-0.119	-0.0638	No
104	Myo1c	13963	-0.123	-0.0652	No
105	Flii	14187	-0.133	-0.0726	No
106	Ifrd1	14315	-0.139	-0.0751	No
107	Mef2a	14648	-0.151	-0.0876	No
108	Fkbp1b	14704	-0.153	-0.0860	No
109	Ache	15259	-0.178	-0.1089	No
110	Cacna1h	15351	-0.182	-0.1084	No
111	Igfbp7	15477	-0.183	-0.1095	No
112	Myh11	15610	-0.189	-0.1108	No
113	Pygm	16358	-0.225	-0.1420	No
114	Plxnb2	16744	-0.247	-0.1545	No
115	Pkia	17349	-0.279	-0.1770	No
116	Atp2a1	17355	-0.279	-0.1694	No
117	Ak1	17533	-0.292	-0.1701	No
118	Col15a1	17647	-0.300	-0.1673	No
119	Myom1	17756	-0.307	-0.1641	No
120	Sorbs1	17944	-0.319	-0.1645	No
121	Cfd	17972	-0.320	-0.1569	No
122	Clu	18128	-0.333	-0.1553	No
123	Csrp3	18277	-0.340	-0.1532	No
124	Tnnc1	18354	-0.349	-0.1472	No
125	Col4a2	18673	-0.380	-0.1525	No
126	Sgcd	18722	-0.389	-0.1439	No
127	Large1	18743	-0.392	-0.1339	No
128	Igf1	18878	-0.408	-0.1291	No
129	Sphk1	18909	-0.411	-0.1191	No
130	Mef2d	18995	-0.420	-0.1115	No
131	Mylpf	19022	-0.423	-0.1009	No
132	Fgf2	19370	-0.478	-0.1050	No
133	Cdkn1a	19498	-0.508	-0.0971	No
134	Ryr1	19571	-0.526	-0.0859	No
135	Pfkm	19656	-0.554	-0.0745	No
136	Mras	19671	-0.560	-0.0595	No
137	Sorbs3	19765	-0.595	-0.0474	No
138	Rit1	19822	-0.630	-0.0325	No
139	Lsp1	19927	-0.721	-0.0175	No
140	Adam12	19972	-0.797	0.0027	No