| Dataset | GMP.GMP.neu_Pheno.cls #Group3_versus_Group4.GMP.neu_Pheno.cls #Group3_versus_Group4_repos |
| Phenotype | GMP.neu_Pheno.cls#Group3_versus_Group4_repos |
| Upregulated in class | 3 |
| GeneSet | HALLMARK_IL2_STAT5_SIGNALING |
| Enrichment Score (ES) | -0.17070735 |
| Normalized Enrichment Score (NES) | -0.7301183 |
| Nominal p-value | 0.934334 |
| FDR q-value | 1.0 |
| FWER p-Value | 0.999 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Plpp1 | 76 | 0.907 | 0.0174 | No |
| 2 | Glipr2 | 146 | 0.791 | 0.0325 | No |
| 3 | Rgs16 | 366 | 0.660 | 0.0370 | No |
| 4 | Cd81 | 504 | 0.608 | 0.0443 | No |
| 5 | Fah | 509 | 0.606 | 0.0583 | No |
| 6 | Rnh1 | 588 | 0.585 | 0.0681 | No |
| 7 | S100a1 | 633 | 0.574 | 0.0793 | No |
| 8 | Syt11 | 643 | 0.569 | 0.0922 | No |
| 9 | Bcl2l1 | 845 | 0.531 | 0.0946 | No |
| 10 | Cst7 | 963 | 0.509 | 0.1006 | No |
| 11 | Rhob | 1055 | 0.494 | 0.1076 | No |
| 12 | Anxa4 | 1258 | 0.469 | 0.1084 | No |
| 13 | Tlr7 | 1280 | 0.464 | 0.1182 | No |
| 14 | Gadd45b | 1442 | 0.447 | 0.1206 | No |
| 15 | Capn3 | 1472 | 0.443 | 0.1295 | No |
| 16 | Etv4 | 1658 | 0.428 | 0.1302 | No |
| 17 | Gsto1 | 1864 | 0.404 | 0.1294 | No |
| 18 | Ecm1 | 1997 | 0.393 | 0.1319 | No |
| 19 | Traf1 | 2188 | 0.373 | 0.1311 | No |
| 20 | Ttc39b | 2372 | 0.360 | 0.1303 | No |
| 21 | She | 2469 | 0.354 | 0.1338 | No |
| 22 | Xbp1 | 2492 | 0.353 | 0.1410 | No |
| 23 | Ccnd2 | 2531 | 0.349 | 0.1472 | No |
| 24 | Bhlhe40 | 2612 | 0.345 | 0.1513 | No |
| 25 | Gucy1b1 | 3258 | 0.304 | 0.1259 | No |
| 26 | Serpinb6a | 3520 | 0.288 | 0.1195 | No |
| 27 | Furin | 3618 | 0.280 | 0.1212 | No |
| 28 | Myc | 3693 | 0.275 | 0.1239 | No |
| 29 | Itga6 | 3723 | 0.273 | 0.1289 | No |
| 30 | Hk2 | 3772 | 0.269 | 0.1328 | No |
| 31 | Ctsz | 3849 | 0.263 | 0.1351 | No |
| 32 | Pou2f1 | 3851 | 0.263 | 0.1412 | No |
| 33 | Socs2 | 3950 | 0.257 | 0.1423 | No |
| 34 | Myo1e | 3981 | 0.255 | 0.1467 | No |
| 35 | Syngr2 | 4174 | 0.246 | 0.1428 | No |
| 36 | Prkch | 4234 | 0.243 | 0.1456 | No |
| 37 | Ifngr1 | 4270 | 0.241 | 0.1495 | No |
| 38 | Il1r2 | 4276 | 0.240 | 0.1548 | No |
| 39 | Ptrh2 | 4427 | 0.231 | 0.1527 | No |
| 40 | Ptch1 | 4569 | 0.228 | 0.1509 | No |
| 41 | Nfkbiz | 4704 | 0.221 | 0.1493 | No |
| 42 | Amacr | 4711 | 0.220 | 0.1542 | No |
| 43 | Lclat1 | 4857 | 0.212 | 0.1519 | No |
| 44 | Praf2 | 4863 | 0.212 | 0.1566 | No |
| 45 | Bcl2 | 5101 | 0.200 | 0.1494 | No |
| 46 | Etfbkmt | 5260 | 0.193 | 0.1459 | No |
| 47 | Map6 | 5276 | 0.192 | 0.1497 | No |
| 48 | Cdcp1 | 5283 | 0.192 | 0.1538 | No |
| 49 | Pnp | 5323 | 0.190 | 0.1563 | No |
| 50 | Klf6 | 5359 | 0.188 | 0.1590 | No |
| 51 | Itih5 | 5702 | 0.173 | 0.1458 | No |
| 52 | Il18r1 | 5741 | 0.171 | 0.1479 | No |
| 53 | Itgae | 5772 | 0.170 | 0.1504 | No |
| 54 | Lrrc8c | 5849 | 0.167 | 0.1505 | No |
| 55 | Phlda1 | 5923 | 0.164 | 0.1506 | No |
| 56 | Ckap4 | 5932 | 0.164 | 0.1541 | No |
| 57 | Fgl2 | 6032 | 0.159 | 0.1528 | No |
| 58 | Spred2 | 6251 | 0.148 | 0.1453 | No |
| 59 | Nop2 | 6252 | 0.148 | 0.1488 | No |
| 60 | Slc29a2 | 6274 | 0.147 | 0.1512 | No |
| 61 | Alcam | 6344 | 0.143 | 0.1510 | No |
| 62 | Plec | 6368 | 0.143 | 0.1532 | No |
| 63 | Hopx | 6418 | 0.141 | 0.1541 | No |
| 64 | Nfil3 | 6459 | 0.139 | 0.1553 | No |
| 65 | Mapkapk2 | 6536 | 0.135 | 0.1546 | No |
| 66 | Slc1a5 | 6668 | 0.129 | 0.1511 | No |
| 67 | Tnfrsf18 | 6691 | 0.128 | 0.1530 | No |
| 68 | Socs1 | 6786 | 0.124 | 0.1511 | No |
| 69 | Il4ra | 7191 | 0.115 | 0.1335 | No |
| 70 | Tnfrsf8 | 7215 | 0.114 | 0.1350 | No |
| 71 | Spry4 | 7226 | 0.114 | 0.1372 | No |
| 72 | Galm | 7253 | 0.113 | 0.1385 | No |
| 73 | Ccr4 | 7371 | 0.108 | 0.1351 | No |
| 74 | Enpp1 | 7685 | 0.096 | 0.1216 | No |
| 75 | Ncs1 | 7740 | 0.094 | 0.1211 | No |
| 76 | Swap70 | 7753 | 0.093 | 0.1226 | No |
| 77 | Uck2 | 7762 | 0.093 | 0.1244 | No |
| 78 | Tnfrsf1b | 7814 | 0.091 | 0.1240 | No |
| 79 | Odc1 | 7928 | 0.086 | 0.1203 | No |
| 80 | Ptger2 | 7954 | 0.085 | 0.1210 | No |
| 81 | Phtf2 | 8416 | 0.067 | 0.0994 | No |
| 82 | Dennd5a | 8647 | 0.057 | 0.0891 | No |
| 83 | Car2 | 8747 | 0.054 | 0.0854 | No |
| 84 | St3gal4 | 8761 | 0.053 | 0.0860 | No |
| 85 | Huwe1 | 8872 | 0.049 | 0.0816 | No |
| 86 | Bmpr2 | 9066 | 0.041 | 0.0728 | No |
| 87 | Igf2r | 9071 | 0.041 | 0.0736 | No |
| 88 | Igf1r | 9144 | 0.038 | 0.0709 | No |
| 89 | Irf8 | 9315 | 0.033 | 0.0631 | No |
| 90 | Snx9 | 9773 | 0.016 | 0.0404 | No |
| 91 | Slc2a3 | 9815 | 0.015 | 0.0387 | No |
| 92 | Cyfip1 | 9934 | 0.012 | 0.0330 | No |
| 93 | Gata1 | 10079 | 0.006 | 0.0259 | No |
| 94 | Selp | 10080 | 0.006 | 0.0261 | No |
| 95 | Twsg1 | 10238 | 0.000 | 0.0182 | No |
| 96 | Cdc6 | 10585 | -0.005 | 0.0008 | No |
| 97 | Prnp | 10666 | -0.007 | -0.0030 | No |
| 98 | Sell | 10815 | -0.013 | -0.0102 | No |
| 99 | Umps | 10956 | -0.018 | -0.0168 | No |
| 100 | Il3ra | 11107 | -0.022 | -0.0239 | No |
| 101 | Ager | 11605 | -0.040 | -0.0480 | No |
| 102 | Tnfsf11 | 11674 | -0.043 | -0.0504 | No |
| 103 | Slc39a8 | 11835 | -0.048 | -0.0574 | No |
| 104 | Ikzf2 | 11886 | -0.050 | -0.0587 | No |
| 105 | Tnfrsf21 | 11901 | -0.050 | -0.0583 | No |
| 106 | Rabgap1l | 11966 | -0.052 | -0.0603 | No |
| 107 | Tiam1 | 11981 | -0.053 | -0.0597 | No |
| 108 | Sh3bgrl2 | 12005 | -0.054 | -0.0596 | No |
| 109 | Hipk2 | 12114 | -0.056 | -0.0637 | No |
| 110 | Lrig1 | 12267 | -0.062 | -0.0699 | No |
| 111 | Eno3 | 12368 | -0.065 | -0.0735 | No |
| 112 | Hycc2 | 12374 | -0.065 | -0.0722 | No |
| 113 | Wls | 12387 | -0.066 | -0.0712 | No |
| 114 | Plscr1 | 12492 | -0.070 | -0.0748 | No |
| 115 | Smpdl3a | 12556 | -0.072 | -0.0763 | No |
| 116 | Rhoh | 12640 | -0.075 | -0.0787 | No |
| 117 | Gpr65 | 12701 | -0.078 | -0.0799 | No |
| 118 | Itgav | 12708 | -0.078 | -0.0784 | No |
| 119 | Tnfrsf4 | 12720 | -0.078 | -0.0771 | No |
| 120 | Arl4a | 12862 | -0.083 | -0.0823 | No |
| 121 | Cd48 | 12878 | -0.084 | -0.0811 | No |
| 122 | Ctla4 | 12966 | -0.087 | -0.0834 | No |
| 123 | Cd86 | 13340 | -0.100 | -0.0999 | No |
| 124 | Cd44 | 13524 | -0.107 | -0.1066 | No |
| 125 | Plin2 | 13537 | -0.107 | -0.1047 | No |
| 126 | Dhrs3 | 13584 | -0.109 | -0.1044 | No |
| 127 | Cdc42se2 | 13895 | -0.121 | -0.1172 | No |
| 128 | Myo1c | 13963 | -0.123 | -0.1177 | No |
| 129 | P4ha1 | 14168 | -0.132 | -0.1249 | No |
| 130 | Cd79b | 14338 | -0.139 | -0.1301 | No |
| 131 | Batf | 14426 | -0.142 | -0.1312 | No |
| 132 | Eef1akmt1 | 14659 | -0.151 | -0.1393 | No |
| 133 | Ltb | 14760 | -0.155 | -0.1407 | No |
| 134 | Maff | 14775 | -0.156 | -0.1378 | No |
| 135 | Drc1 | 15180 | -0.173 | -0.1541 | No |
| 136 | Muc1 | 15262 | -0.178 | -0.1540 | No |
| 137 | Cdkn1c | 15364 | -0.182 | -0.1548 | No |
| 138 | Ndrg1 | 15680 | -0.192 | -0.1662 | Yes |
| 139 | Nrp1 | 15714 | -0.194 | -0.1633 | Yes |
| 140 | Ahnak | 15790 | -0.198 | -0.1624 | Yes |
| 141 | Irf4 | 15835 | -0.201 | -0.1600 | Yes |
| 142 | Ccnd3 | 15939 | -0.206 | -0.1603 | Yes |
| 143 | Capg | 15957 | -0.206 | -0.1563 | Yes |
| 144 | Casp3 | 16125 | -0.212 | -0.1598 | Yes |
| 145 | Mxd1 | 16146 | -0.213 | -0.1558 | Yes |
| 146 | Icos | 16152 | -0.214 | -0.1510 | Yes |
| 147 | Gbp3 | 16261 | -0.219 | -0.1514 | Yes |
| 148 | Tgm2 | 16262 | -0.219 | -0.1462 | Yes |
| 149 | Pth1r | 16335 | -0.223 | -0.1446 | Yes |
| 150 | Abcb1a | 16618 | -0.239 | -0.1532 | Yes |
| 151 | Il10ra | 16755 | -0.247 | -0.1543 | Yes |
| 152 | Snx14 | 16776 | -0.249 | -0.1495 | Yes |
| 153 | Gpx4 | 16880 | -0.255 | -0.1487 | Yes |
| 154 | Rragd | 17197 | -0.272 | -0.1582 | Yes |
| 155 | Pus1 | 17264 | -0.275 | -0.1551 | Yes |
| 156 | Tnfsf10 | 17305 | -0.277 | -0.1506 | Yes |
| 157 | Scn9a | 17373 | -0.280 | -0.1474 | Yes |
| 158 | Plagl1 | 17438 | -0.284 | -0.1440 | Yes |
| 159 | Dcps | 17573 | -0.294 | -0.1438 | Yes |
| 160 | P2rx4 | 17860 | -0.315 | -0.1509 | Yes |
| 161 | F2rl2 | 17861 | -0.315 | -0.1435 | Yes |
| 162 | Cxcl10 | 17887 | -0.316 | -0.1373 | Yes |
| 163 | Ncoa3 | 18015 | -0.325 | -0.1361 | Yes |
| 164 | Tnfrsf9 | 18039 | -0.327 | -0.1296 | Yes |
| 165 | Map3k8 | 18356 | -0.349 | -0.1374 | Yes |
| 166 | Gabarapl1 | 18455 | -0.358 | -0.1339 | Yes |
| 167 | Ahr | 18462 | -0.359 | -0.1258 | Yes |
| 168 | Cish | 18617 | -0.374 | -0.1248 | Yes |
| 169 | Flt3l | 18621 | -0.374 | -0.1162 | Yes |
| 170 | Pdcd2l | 18634 | -0.376 | -0.1080 | Yes |
| 171 | Pim1 | 18716 | -0.388 | -0.1029 | Yes |
| 172 | Ccne1 | 18765 | -0.394 | -0.0961 | Yes |
| 173 | Adam19 | 18876 | -0.408 | -0.0921 | Yes |
| 174 | Il10 | 18987 | -0.420 | -0.0878 | Yes |
| 175 | Ahcyl | 19071 | -0.430 | -0.0819 | Yes |
| 176 | Il2ra | 19144 | -0.440 | -0.0752 | Yes |
| 177 | Il1rl1 | 19426 | -0.489 | -0.0779 | Yes |
| 178 | Serpinc1 | 19465 | -0.500 | -0.0681 | Yes |
| 179 | Spp1 | 19486 | -0.505 | -0.0572 | Yes |
| 180 | Rora | 19708 | -0.573 | -0.0549 | Yes |
| 181 | Ikzf4 | 19717 | -0.576 | -0.0418 | Yes |
| 182 | Nt5e | 19807 | -0.624 | -0.0317 | Yes |
| 183 | Csf1 | 20004 | -0.905 | -0.0204 | Yes |
| 184 | Ifitm3 | 20006 | -0.913 | 0.0010 | Yes |

