| Dataset | GMP.GMP.neu_Pheno.cls #Group3_versus_Group4.GMP.neu_Pheno.cls #Group3_versus_Group4_repos |
| Phenotype | GMP.neu_Pheno.cls#Group3_versus_Group4_repos |
| Upregulated in class | 3 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | -0.19432214 |
| Normalized Enrichment Score (NES) | -0.9157341 |
| Nominal p-value | 0.64705884 |
| FDR q-value | 1.0 |
| FWER p-Value | 0.994 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Pdzk1 | 128 | 0.804 | 0.0185 | Yes |
| 2 | Ccnd1 | 220 | 0.724 | 0.0363 | Yes |
| 3 | Tpd52l1 | 405 | 0.643 | 0.0470 | Yes |
| 4 | Dynlt3 | 449 | 0.627 | 0.0643 | Yes |
| 5 | Gale | 454 | 0.625 | 0.0835 | Yes |
| 6 | Sult2b1 | 524 | 0.601 | 0.0986 | Yes |
| 7 | Blvrb | 646 | 0.569 | 0.1101 | Yes |
| 8 | Slc16a1 | 795 | 0.542 | 0.1195 | Yes |
| 9 | Pkp3 | 1140 | 0.486 | 0.1172 | Yes |
| 10 | Gjb3 | 1509 | 0.439 | 0.1123 | Yes |
| 11 | Id2 | 1794 | 0.413 | 0.1108 | Yes |
| 12 | Opn3 | 1934 | 0.398 | 0.1162 | Yes |
| 13 | Zfp36 | 2112 | 0.380 | 0.1190 | Yes |
| 14 | Cdh1 | 2170 | 0.373 | 0.1277 | Yes |
| 15 | Rnaseh2a | 2283 | 0.367 | 0.1335 | Yes |
| 16 | Slc2a8 | 2303 | 0.365 | 0.1438 | Yes |
| 17 | Xbp1 | 2492 | 0.353 | 0.1453 | Yes |
| 18 | Ptpn6 | 2741 | 0.336 | 0.1432 | Yes |
| 19 | Fkbp4 | 2778 | 0.332 | 0.1517 | Yes |
| 20 | Scarb1 | 2792 | 0.331 | 0.1613 | Yes |
| 21 | Fos | 2798 | 0.330 | 0.1713 | Yes |
| 22 | Plac1 | 2857 | 0.324 | 0.1784 | Yes |
| 23 | Dusp2 | 2996 | 0.318 | 0.1813 | Yes |
| 24 | Prlr | 3257 | 0.304 | 0.1776 | Yes |
| 25 | St6galnac2 | 3386 | 0.294 | 0.1803 | Yes |
| 26 | Dnajc12 | 3408 | 0.293 | 0.1883 | Yes |
| 27 | Homer2 | 3711 | 0.274 | 0.1816 | Yes |
| 28 | Rapgefl1 | 3754 | 0.271 | 0.1879 | Yes |
| 29 | Cdc20 | 3865 | 0.262 | 0.1905 | Yes |
| 30 | Ass1 | 4187 | 0.246 | 0.1820 | No |
| 31 | Idh2 | 4243 | 0.242 | 0.1867 | No |
| 32 | Sema3b | 4483 | 0.229 | 0.1818 | No |
| 33 | Pgr | 4590 | 0.226 | 0.1835 | No |
| 34 | Cd9 | 5015 | 0.204 | 0.1684 | No |
| 35 | Bcl2 | 5101 | 0.200 | 0.1704 | No |
| 36 | Klf4 | 5415 | 0.184 | 0.1603 | No |
| 37 | Kif20a | 5558 | 0.182 | 0.1588 | No |
| 38 | Rab31 | 5613 | 0.178 | 0.1616 | No |
| 39 | Flnb | 5646 | 0.177 | 0.1655 | No |
| 40 | Wfs1 | 5813 | 0.168 | 0.1624 | No |
| 41 | Sgk1 | 5848 | 0.167 | 0.1658 | No |
| 42 | Ugdh | 5895 | 0.165 | 0.1686 | No |
| 43 | Il17rb | 6017 | 0.160 | 0.1675 | No |
| 44 | Pdcd4 | 6104 | 0.156 | 0.1680 | No |
| 45 | Slc24a3 | 6118 | 0.155 | 0.1721 | No |
| 46 | Ptger3 | 6906 | 0.120 | 0.1362 | No |
| 47 | Tmprss3 | 7242 | 0.113 | 0.1229 | No |
| 48 | Aldh3a2 | 7254 | 0.112 | 0.1258 | No |
| 49 | Gins2 | 7270 | 0.112 | 0.1285 | No |
| 50 | Siah2 | 7445 | 0.105 | 0.1230 | No |
| 51 | Tst | 7477 | 0.104 | 0.1247 | No |
| 52 | Hmgcs2 | 7578 | 0.100 | 0.1228 | No |
| 53 | Bag1 | 7619 | 0.099 | 0.1238 | No |
| 54 | S100a9 | 7663 | 0.097 | 0.1246 | No |
| 55 | Isg20 | 7667 | 0.097 | 0.1275 | No |
| 56 | Nrip1 | 7674 | 0.097 | 0.1302 | No |
| 57 | Cox6c | 7785 | 0.092 | 0.1275 | No |
| 58 | Chpt1 | 7824 | 0.091 | 0.1284 | No |
| 59 | Farp1 | 7977 | 0.084 | 0.1234 | No |
| 60 | Cyp26b1 | 8073 | 0.080 | 0.1211 | No |
| 61 | Rabep1 | 8146 | 0.078 | 0.1199 | No |
| 62 | Cav1 | 8171 | 0.077 | 0.1210 | No |
| 63 | Btg3 | 8174 | 0.077 | 0.1233 | No |
| 64 | Nab2 | 8192 | 0.076 | 0.1248 | No |
| 65 | Ncor2 | 8200 | 0.076 | 0.1268 | No |
| 66 | Itpk1 | 8338 | 0.070 | 0.1221 | No |
| 67 | Perp | 8345 | 0.070 | 0.1240 | No |
| 68 | Dcxr | 8560 | 0.061 | 0.1151 | No |
| 69 | Top2a | 8660 | 0.057 | 0.1119 | No |
| 70 | Car2 | 8747 | 0.054 | 0.1092 | No |
| 71 | Igfbp4 | 8911 | 0.047 | 0.1025 | No |
| 72 | Hspa4l | 8982 | 0.045 | 0.1003 | No |
| 73 | Papss2 | 9068 | 0.041 | 0.0973 | No |
| 74 | Tspan13 | 9076 | 0.041 | 0.0982 | No |
| 75 | Tfpi2 | 9194 | 0.036 | 0.0935 | No |
| 76 | Chst8 | 9219 | 0.036 | 0.0934 | No |
| 77 | Plaat3 | 9363 | 0.031 | 0.0871 | No |
| 78 | Add3 | 9418 | 0.029 | 0.0853 | No |
| 79 | Atp2b4 | 9451 | 0.028 | 0.0846 | No |
| 80 | Myb | 9533 | 0.026 | 0.0813 | No |
| 81 | Abhd2 | 9571 | 0.024 | 0.0802 | No |
| 82 | Stil | 9672 | 0.020 | 0.0758 | No |
| 83 | Aff1 | 9755 | 0.017 | 0.0722 | No |
| 84 | Tob1 | 9803 | 0.015 | 0.0703 | No |
| 85 | Slc27a2 | 10019 | 0.009 | 0.0597 | No |
| 86 | Il6st | 10520 | -0.003 | 0.0347 | No |
| 87 | Amfr | 10564 | -0.004 | 0.0326 | No |
| 88 | Cdc6 | 10585 | -0.005 | 0.0318 | No |
| 89 | Prkar2b | 10992 | -0.019 | 0.0119 | No |
| 90 | Mapk13 | 11144 | -0.024 | 0.0051 | No |
| 91 | Etfb | 11423 | -0.034 | -0.0079 | No |
| 92 | Slc22a5 | 11428 | -0.034 | -0.0070 | No |
| 93 | Clic3 | 11568 | -0.039 | -0.0128 | No |
| 94 | Ptges | 11619 | -0.040 | -0.0141 | No |
| 95 | Fkbp5 | 11645 | -0.041 | -0.0141 | No |
| 96 | Plk4 | 11770 | -0.045 | -0.0189 | No |
| 97 | Mdk | 11779 | -0.046 | -0.0179 | No |
| 98 | Elovl5 | 11819 | -0.047 | -0.0184 | No |
| 99 | Mocs2 | 11863 | -0.049 | -0.0190 | No |
| 100 | Rps6ka2 | 11868 | -0.049 | -0.0177 | No |
| 101 | Gla | 11889 | -0.050 | -0.0172 | No |
| 102 | Tiam1 | 11981 | -0.053 | -0.0201 | No |
| 103 | Jak1 | 12324 | -0.064 | -0.0353 | No |
| 104 | Dnajc1 | 12405 | -0.067 | -0.0373 | No |
| 105 | Scnn1a | 12495 | -0.070 | -0.0396 | No |
| 106 | Nxt1 | 12574 | -0.073 | -0.0413 | No |
| 107 | Fdft1 | 12840 | -0.082 | -0.0521 | No |
| 108 | Anxa9 | 12970 | -0.087 | -0.0559 | No |
| 109 | Aldh3b1 | 13083 | -0.091 | -0.0587 | No |
| 110 | Sfn | 13237 | -0.096 | -0.0634 | No |
| 111 | Dlg5 | 13432 | -0.104 | -0.0699 | No |
| 112 | Ppif | 13518 | -0.107 | -0.0709 | No |
| 113 | Cd44 | 13524 | -0.107 | -0.0679 | No |
| 114 | Kcnk5 | 13551 | -0.108 | -0.0658 | No |
| 115 | Olfm1 | 13563 | -0.108 | -0.0630 | No |
| 116 | St14 | 13582 | -0.109 | -0.0606 | No |
| 117 | Slc7a5 | 13667 | -0.112 | -0.0613 | No |
| 118 | Sord | 13724 | -0.114 | -0.0606 | No |
| 119 | Slc26a2 | 14404 | -0.141 | -0.0904 | No |
| 120 | Mest | 14425 | -0.142 | -0.0870 | No |
| 121 | Batf | 14426 | -0.142 | -0.0826 | No |
| 122 | Rbbp8 | 14567 | -0.148 | -0.0850 | No |
| 123 | Scube2 | 15348 | -0.182 | -0.1186 | No |
| 124 | Impa2 | 16205 | -0.217 | -0.1550 | No |
| 125 | Snx10 | 16778 | -0.249 | -0.1761 | No |
| 126 | Llgl2 | 17142 | -0.269 | -0.1860 | No |
| 127 | Car12 | 17308 | -0.277 | -0.1857 | No |
| 128 | Dhcr7 | 17313 | -0.277 | -0.1773 | No |
| 129 | Cpe | 17335 | -0.279 | -0.1697 | No |
| 130 | Jak2 | 17518 | -0.291 | -0.1698 | No |
| 131 | Tjp3 | 17673 | -0.302 | -0.1682 | No |
| 132 | Celsr2 | 18008 | -0.324 | -0.1750 | No |
| 133 | Slc29a1 | 18127 | -0.333 | -0.1706 | No |
| 134 | Tnnc1 | 18354 | -0.349 | -0.1712 | No |
| 135 | Fabp5 | 18360 | -0.349 | -0.1606 | No |
| 136 | Mapt | 18482 | -0.361 | -0.1555 | No |
| 137 | Abca3 | 18504 | -0.365 | -0.1453 | No |
| 138 | Lsr | 18516 | -0.366 | -0.1345 | No |
| 139 | Cish | 18617 | -0.374 | -0.1279 | No |
| 140 | Large1 | 18743 | -0.392 | -0.1221 | No |
| 141 | Mettl3 | 18750 | -0.393 | -0.1102 | No |
| 142 | Arl3 | 18841 | -0.404 | -0.1022 | No |
| 143 | Cacna2d2 | 18945 | -0.416 | -0.0945 | No |
| 144 | Hr | 18988 | -0.420 | -0.0836 | No |
| 145 | Ltf | 18989 | -0.420 | -0.0705 | No |
| 146 | Gper1 | 19202 | -0.449 | -0.0673 | No |
| 147 | Unc13b | 19434 | -0.493 | -0.0636 | No |
| 148 | Xrcc3 | 19658 | -0.555 | -0.0576 | No |
| 149 | Frk | 19702 | -0.571 | -0.0421 | No |
| 150 | Gfus | 19707 | -0.573 | -0.0246 | No |
| 151 | Myof | 19734 | -0.579 | -0.0079 | No |
| 152 | Slc1a4 | 19936 | -0.728 | 0.0045 | No |

