| Dataset | GMP.GMP.neu_Pheno.cls #Group3_versus_Group4.GMP.neu_Pheno.cls #Group3_versus_Group4_repos |
| Phenotype | GMP.neu_Pheno.cls#Group3_versus_Group4_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | 0.2319664 |
| Normalized Enrichment Score (NES) | 0.99572694 |
| Nominal p-value | 0.46456692 |
| FDR q-value | 0.7258279 |
| FWER p-Value | 0.987 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Sec14l2 | 63 | 0.924 | 0.0241 | Yes |
| 2 | Pdzk1 | 128 | 0.804 | 0.0446 | Yes |
| 3 | Reep1 | 210 | 0.736 | 0.0623 | Yes |
| 4 | Syngr1 | 213 | 0.734 | 0.0838 | Yes |
| 5 | Ccnd1 | 220 | 0.724 | 0.1049 | Yes |
| 6 | Tpd52l1 | 405 | 0.643 | 0.1146 | Yes |
| 7 | Dynlt3 | 449 | 0.627 | 0.1310 | Yes |
| 8 | Sult2b1 | 524 | 0.601 | 0.1450 | Yes |
| 9 | Blvrb | 646 | 0.569 | 0.1557 | Yes |
| 10 | Slc16a1 | 795 | 0.542 | 0.1643 | Yes |
| 11 | Endod1 | 897 | 0.522 | 0.1746 | Yes |
| 12 | Stc2 | 1078 | 0.492 | 0.1800 | Yes |
| 13 | Gja1 | 1467 | 0.444 | 0.1736 | Yes |
| 14 | Pmaip1 | 1824 | 0.410 | 0.1678 | Yes |
| 15 | Slc7a2 | 1909 | 0.400 | 0.1754 | Yes |
| 16 | Opn3 | 1934 | 0.398 | 0.1859 | Yes |
| 17 | Gfra1 | 2081 | 0.384 | 0.1899 | Yes |
| 18 | Xbp1 | 2492 | 0.353 | 0.1797 | Yes |
| 19 | Bhlhe40 | 2612 | 0.345 | 0.1839 | Yes |
| 20 | Fkbp4 | 2778 | 0.332 | 0.1853 | Yes |
| 21 | Scarb1 | 2792 | 0.331 | 0.1945 | Yes |
| 22 | Fos | 2798 | 0.330 | 0.2039 | Yes |
| 23 | Ar | 2864 | 0.323 | 0.2102 | Yes |
| 24 | Krt8 | 3313 | 0.300 | 0.1965 | Yes |
| 25 | Mpped2 | 3535 | 0.287 | 0.1938 | Yes |
| 26 | Myc | 3693 | 0.275 | 0.1941 | Yes |
| 27 | Rapgefl1 | 3754 | 0.271 | 0.1991 | Yes |
| 28 | Greb1 | 3911 | 0.260 | 0.1989 | Yes |
| 29 | Nav2 | 4188 | 0.245 | 0.1922 | Yes |
| 30 | Mindy1 | 4233 | 0.243 | 0.1972 | Yes |
| 31 | Celsr1 | 4291 | 0.239 | 0.2014 | Yes |
| 32 | Ablim1 | 4306 | 0.238 | 0.2077 | Yes |
| 33 | Pex11a | 4429 | 0.230 | 0.2084 | Yes |
| 34 | Sema3b | 4483 | 0.229 | 0.2125 | Yes |
| 35 | Bcl11b | 4567 | 0.228 | 0.2150 | Yes |
| 36 | Podxl | 4580 | 0.227 | 0.2211 | Yes |
| 37 | Pgr | 4590 | 0.226 | 0.2273 | Yes |
| 38 | Klf10 | 4793 | 0.215 | 0.2235 | Yes |
| 39 | Unc119 | 4794 | 0.215 | 0.2299 | Yes |
| 40 | Akap1 | 5046 | 0.202 | 0.2232 | Yes |
| 41 | Bcl2 | 5101 | 0.200 | 0.2264 | Yes |
| 42 | Rhod | 5381 | 0.187 | 0.2179 | Yes |
| 43 | Klf4 | 5415 | 0.184 | 0.2217 | Yes |
| 44 | Tmem164 | 5585 | 0.180 | 0.2185 | Yes |
| 45 | Rab31 | 5613 | 0.178 | 0.2224 | Yes |
| 46 | Flnb | 5646 | 0.177 | 0.2260 | Yes |
| 47 | Sh3bp5 | 5779 | 0.170 | 0.2244 | Yes |
| 48 | Wfs1 | 5813 | 0.168 | 0.2277 | Yes |
| 49 | Calb2 | 5896 | 0.165 | 0.2284 | Yes |
| 50 | P2ry2 | 5939 | 0.163 | 0.2311 | Yes |
| 51 | Il17rb | 6017 | 0.160 | 0.2320 | Yes |
| 52 | Slc24a3 | 6118 | 0.155 | 0.2315 | No |
| 53 | Tbc1d30 | 6744 | 0.125 | 0.2037 | No |
| 54 | Wwc1 | 6932 | 0.119 | 0.1979 | No |
| 55 | Tmprss3 | 7242 | 0.113 | 0.1856 | No |
| 56 | Dlc1 | 7255 | 0.112 | 0.1884 | No |
| 57 | Tiparp | 7273 | 0.111 | 0.1908 | No |
| 58 | Cant1 | 7395 | 0.107 | 0.1879 | No |
| 59 | Med13l | 7443 | 0.105 | 0.1886 | No |
| 60 | Siah2 | 7445 | 0.105 | 0.1917 | No |
| 61 | Bag1 | 7619 | 0.099 | 0.1859 | No |
| 62 | Nrip1 | 7674 | 0.097 | 0.1860 | No |
| 63 | Rhobtb3 | 7786 | 0.092 | 0.1831 | No |
| 64 | Chpt1 | 7824 | 0.091 | 0.1840 | No |
| 65 | B4galt1 | 7896 | 0.088 | 0.1830 | No |
| 66 | Farp1 | 7977 | 0.084 | 0.1814 | No |
| 67 | Cyp26b1 | 8073 | 0.080 | 0.1790 | No |
| 68 | Ncor2 | 8200 | 0.076 | 0.1749 | No |
| 69 | Mybbp1a | 8202 | 0.076 | 0.1771 | No |
| 70 | Kdm4b | 8316 | 0.071 | 0.1735 | No |
| 71 | Itpk1 | 8338 | 0.070 | 0.1745 | No |
| 72 | Slc2a1 | 8748 | 0.053 | 0.1555 | No |
| 73 | Rrp12 | 8826 | 0.050 | 0.1531 | No |
| 74 | Igfbp4 | 8911 | 0.047 | 0.1503 | No |
| 75 | Papss2 | 9068 | 0.041 | 0.1436 | No |
| 76 | Igf1r | 9144 | 0.038 | 0.1410 | No |
| 77 | Plaat3 | 9363 | 0.031 | 0.1309 | No |
| 78 | Add3 | 9418 | 0.029 | 0.1291 | No |
| 79 | Myb | 9533 | 0.026 | 0.1241 | No |
| 80 | Abhd2 | 9571 | 0.024 | 0.1229 | No |
| 81 | Aff1 | 9755 | 0.017 | 0.1142 | No |
| 82 | Tob1 | 9803 | 0.015 | 0.1123 | No |
| 83 | Fasn | 9971 | 0.010 | 0.1042 | No |
| 84 | Slc27a2 | 10019 | 0.009 | 0.1021 | No |
| 85 | Fhl2 | 10054 | 0.007 | 0.1006 | No |
| 86 | Nadsyn1 | 10203 | 0.001 | 0.0932 | No |
| 87 | Il6st | 10520 | -0.003 | 0.0774 | No |
| 88 | Amfr | 10564 | -0.004 | 0.0753 | No |
| 89 | Isg20l2 | 10622 | -0.006 | 0.0726 | No |
| 90 | Kazn | 11036 | -0.020 | 0.0524 | No |
| 91 | Ugcg | 11141 | -0.024 | 0.0479 | No |
| 92 | Olfml3 | 11303 | -0.029 | 0.0407 | No |
| 93 | Slc22a5 | 11428 | -0.034 | 0.0354 | No |
| 94 | Clic3 | 11568 | -0.039 | 0.0296 | No |
| 95 | Ptges | 11619 | -0.040 | 0.0282 | No |
| 96 | Fkbp5 | 11645 | -0.041 | 0.0282 | No |
| 97 | Elovl5 | 11819 | -0.047 | 0.0209 | No |
| 98 | Rps6ka2 | 11868 | -0.049 | 0.0199 | No |
| 99 | Gla | 11889 | -0.050 | 0.0204 | No |
| 100 | Mast4 | 11902 | -0.050 | 0.0212 | No |
| 101 | Tiam1 | 11981 | -0.053 | 0.0189 | No |
| 102 | Slc39a6 | 11985 | -0.053 | 0.0203 | No |
| 103 | Slc37a1 | 12177 | -0.059 | 0.0124 | No |
| 104 | Lrig1 | 12267 | -0.062 | 0.0098 | No |
| 105 | Scnn1a | 12495 | -0.070 | 0.0004 | No |
| 106 | Adcy9 | 12530 | -0.071 | 0.0008 | No |
| 107 | Nxt1 | 12574 | -0.073 | 0.0008 | No |
| 108 | Zfp185 | 12623 | -0.075 | 0.0006 | No |
| 109 | Svil | 12667 | -0.076 | 0.0007 | No |
| 110 | Elf1 | 12686 | -0.077 | 0.0020 | No |
| 111 | Fdft1 | 12840 | -0.082 | -0.0032 | No |
| 112 | Anxa9 | 12970 | -0.087 | -0.0072 | No |
| 113 | Aldh3b1 | 13083 | -0.091 | -0.0101 | No |
| 114 | Abat | 13139 | -0.093 | -0.0101 | No |
| 115 | Sfn | 13237 | -0.096 | -0.0122 | No |
| 116 | Thsd4 | 13329 | -0.100 | -0.0138 | No |
| 117 | Ppif | 13518 | -0.107 | -0.0201 | No |
| 118 | Cd44 | 13524 | -0.107 | -0.0172 | No |
| 119 | Kcnk5 | 13551 | -0.108 | -0.0154 | No |
| 120 | Olfm1 | 13563 | -0.108 | -0.0127 | No |
| 121 | Dhrs3 | 13584 | -0.109 | -0.0105 | No |
| 122 | Slc7a5 | 13667 | -0.112 | -0.0113 | No |
| 123 | Tgif2 | 13886 | -0.120 | -0.0188 | No |
| 124 | Ttc39a | 13932 | -0.122 | -0.0174 | No |
| 125 | Rara | 14164 | -0.132 | -0.0252 | No |
| 126 | Rasgrp1 | 14175 | -0.132 | -0.0217 | No |
| 127 | Slc26a2 | 14404 | -0.141 | -0.0291 | No |
| 128 | Rbbp8 | 14567 | -0.148 | -0.0328 | No |
| 129 | Snx24 | 14661 | -0.151 | -0.0330 | No |
| 130 | Cbfa2t3 | 14828 | -0.159 | -0.0367 | No |
| 131 | Krt18 | 14888 | -0.162 | -0.0349 | No |
| 132 | Rab17 | 14903 | -0.162 | -0.0308 | No |
| 133 | Muc1 | 15262 | -0.178 | -0.0436 | No |
| 134 | Asb13 | 15523 | -0.185 | -0.0512 | No |
| 135 | Mlph | 15527 | -0.185 | -0.0459 | No |
| 136 | Mreg | 15915 | -0.204 | -0.0594 | No |
| 137 | Tgm2 | 16262 | -0.219 | -0.0703 | No |
| 138 | Deptor | 16975 | -0.261 | -0.0984 | No |
| 139 | Slc1a1 | 17195 | -0.272 | -0.1014 | No |
| 140 | Inpp5f | 17304 | -0.277 | -0.0987 | No |
| 141 | Car12 | 17308 | -0.277 | -0.0906 | No |
| 142 | Dhcr7 | 17313 | -0.277 | -0.0827 | No |
| 143 | Gab2 | 17372 | -0.280 | -0.0773 | No |
| 144 | Jak2 | 17518 | -0.291 | -0.0760 | No |
| 145 | Tjp3 | 17673 | -0.302 | -0.0748 | No |
| 146 | Retreg1 | 17819 | -0.312 | -0.0729 | No |
| 147 | Sybu | 17850 | -0.314 | -0.0652 | No |
| 148 | Celsr2 | 18008 | -0.324 | -0.0635 | No |
| 149 | Med24 | 18219 | -0.338 | -0.0641 | No |
| 150 | Mapt | 18482 | -0.361 | -0.0666 | No |
| 151 | Abca3 | 18504 | -0.365 | -0.0569 | No |
| 152 | Slc19a2 | 18578 | -0.371 | -0.0496 | No |
| 153 | Cish | 18617 | -0.374 | -0.0405 | No |
| 154 | Arl3 | 18841 | -0.404 | -0.0398 | No |
| 155 | Hr | 18988 | -0.420 | -0.0347 | No |
| 156 | Elovl2 | 19358 | -0.474 | -0.0393 | No |
| 157 | Frk | 19702 | -0.571 | -0.0397 | No |
| 158 | Myof | 19734 | -0.579 | -0.0242 | No |
| 159 | Mybl1 | 19748 | -0.586 | -0.0076 | No |
| 160 | Slc1a4 | 19936 | -0.728 | 0.0045 | No |

