Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group3_versus_Group4.GMP.neu_Pheno.cls #Group3_versus_Group4_repos
Phenotype	GMP.neu_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2784624
Normalized Enrichment Score (NES)	1.2509525
Nominal p-value	0.057692308
FDR q-value	1.0
FWER p-Value	0.864

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tnfrsf12a	16	1.064	0.0272	Yes
2	Tnfaip3	67	0.917	0.0488	Yes
3	Mmp2	431	0.635	0.0472	Yes
4	Vcan	499	0.609	0.0598	Yes
5	Sdc1	558	0.594	0.0725	Yes
6	Lgals1	599	0.582	0.0858	Yes
7	Itgb5	604	0.580	0.1008	Yes
8	Fas	622	0.577	0.1151	Yes
9	Vegfc	719	0.555	0.1249	Yes
10	Eno2	1003	0.502	0.1239	Yes
11	Rhob	1055	0.494	0.1343	Yes
12	Dab2	1129	0.486	0.1434	Yes
13	Cadm1	1181	0.481	0.1535	Yes
14	Bgn	1337	0.457	0.1577	Yes
15	Gadd45b	1442	0.447	0.1642	Yes
16	Gja1	1467	0.444	0.1746	Yes
17	Pcolce	1533	0.436	0.1828	Yes
18	Sparc	1537	0.435	0.1941	Yes
19	Col11a1	1775	0.413	0.1931	Yes
20	Id2	1794	0.413	0.2030	Yes
21	Col5a3	1852	0.405	0.2108	Yes
22	Ecm1	1997	0.393	0.2139	Yes
23	Vim	2008	0.392	0.2237	Yes
24	Lama1	2160	0.374	0.2259	Yes
25	Cap2	2171	0.373	0.2352	Yes
26	Slc6a8	2224	0.370	0.2424	Yes
27	Fbln1	2310	0.364	0.2476	Yes
28	Timp3	2444	0.356	0.2503	Yes
29	Tpm2	2505	0.351	0.2565	Yes
30	Slit2	2530	0.349	0.2645	Yes
31	Serpine2	2545	0.348	0.2729	Yes
32	Fbn2	2709	0.337	0.2736	Yes
33	Slit3	2786	0.331	0.2785	Yes
34	Pcolce2	3186	0.305	0.2664	No
35	Spock1	3207	0.305	0.2734	No
36	Pvr	3613	0.281	0.2604	No
37	Gem	3889	0.260	0.2534	No
38	Gm21451	4089	0.250	0.2500	No
39	Basp1	4396	0.233	0.2407	No
40	Gpc1	4550	0.228	0.2390	No
41	Fzd8	4672	0.223	0.2388	No
42	Lama3	5092	0.201	0.2230	No
43	Thy1	5224	0.195	0.2215	No
44	Fuca1	5241	0.194	0.2258	No
45	Loxl1	5427	0.184	0.2214	No
46	Myl9	5448	0.184	0.2252	No
47	Pdgfrb	5510	0.184	0.2270	No
48	Calu	5831	0.167	0.2153	No
49	Wipf1	5963	0.162	0.2130	No
50	Efemp2	6210	0.150	0.2045	No
51	Lamc1	6543	0.134	0.1914	No
52	Plaur	6651	0.129	0.1894	No
53	Cald1	6677	0.128	0.1915	No
54	Vegfa	6806	0.123	0.1883	No
55	Itga5	6894	0.120	0.1871	No
56	Htra1	6929	0.119	0.1885	No
57	Dpysl3	6939	0.119	0.1912	No
58	Col5a2	6940	0.119	0.1943	No
59	Col1a2	6952	0.119	0.1969	No
60	Vcam1	7335	0.109	0.1806	No
61	Ppib	7747	0.093	0.1623	No
62	Col7a1	7751	0.093	0.1646	No
63	Tagln	7772	0.092	0.1661	No
64	Qsox1	7981	0.084	0.1578	No
65	Colgalt1	8173	0.077	0.1502	No
66	Mcm7	8428	0.066	0.1392	No
67	Pfn2	8442	0.066	0.1403	No
68	Fn1	8810	0.051	0.1232	No
69	Igfbp4	8911	0.047	0.1194	No
70	Jun	8945	0.046	0.1189	No
71	Flna	8954	0.046	0.1197	No
72	Cdh2	9126	0.039	0.1121	No
73	Tfpi2	9194	0.036	0.1097	No
74	Ecm2	9459	0.028	0.0972	No
75	Tgfbr3	9700	0.019	0.0856	No
76	Plod3	9944	0.011	0.0737	No
77	Col1a1	10250	0.000	0.0583	No
78	Thbs2	10268	0.000	0.0575	No
79	Fbln2	10453	-0.001	0.0482	No
80	Mylk	11152	-0.024	0.0138	No
81	Inhba	11184	-0.025	0.0129	No
82	Tgfb1	11199	-0.025	0.0128	No
83	Notch2	11502	-0.036	-0.0014	No
84	Fbln5	11829	-0.048	-0.0165	No
85	Fstl3	11926	-0.051	-0.0200	No
86	Magee1	12304	-0.063	-0.0373	No
87	Emp3	12626	-0.075	-0.0515	No
88	Itgav	12708	-0.078	-0.0535	No
89	Fstl1	12770	-0.080	-0.0545	No
90	Itgb3	13195	-0.095	-0.0733	No
91	Matn2	13335	-0.100	-0.0777	No
92	Cd44	13524	-0.107	-0.0843	No
93	Plod2	13591	-0.109	-0.0848	No
94	Plod1	13669	-0.112	-0.0857	No
95	Itgb1	13687	-0.113	-0.0836	No
96	Dcn	13823	-0.118	-0.0873	No
97	Lama2	13867	-0.119	-0.0863	No
98	Cdh11	13976	-0.124	-0.0885	No
99	Copa	14018	-0.126	-0.0872	No
100	Mest	14425	-0.142	-0.1039	No
101	Postn	14501	-0.145	-0.1039	No
102	Bmp1	14729	-0.154	-0.1113	No
103	Sfrp4	15002	-0.167	-0.1206	No
104	Edil3	15762	-0.196	-0.1536	No
105	Ntm	15924	-0.205	-0.1563	No
106	Capg	15957	-0.206	-0.1525	No
107	Sgcb	16041	-0.211	-0.1511	No
108	Sntb1	16150	-0.214	-0.1509	No
109	Tgm2	16262	-0.219	-0.1507	No
110	Glipr1	16329	-0.223	-0.1482	No
111	Comp	16591	-0.238	-0.1551	No
112	Gadd45a	16675	-0.243	-0.1529	No
113	Nid2	16737	-0.246	-0.1495	No
114	Tpm1	16924	-0.258	-0.1520	No
115	Col16a1	17035	-0.265	-0.1506	No
116	Pdlim4	17315	-0.277	-0.1573	No
117	Lrp1	17743	-0.306	-0.1708	No
118	Sat1	17793	-0.310	-0.1651	No
119	Mmp14	17849	-0.314	-0.1596	No
120	Tnc	17866	-0.316	-0.1521	No
121	Abi3bp	17890	-0.316	-0.1449	No
122	Itga2	17984	-0.321	-0.1412	No
123	Tpm4	18021	-0.325	-0.1344	No
124	Col4a1	18109	-0.332	-0.1301	No
125	Thbs1	18231	-0.339	-0.1273	No
126	Dst	18241	-0.339	-0.1188	No
127	Fbn1	18488	-0.363	-0.1217	No
128	Col5a1	18645	-0.377	-0.1196	No
129	Col4a2	18673	-0.380	-0.1110	No
130	Sgcd	18722	-0.389	-0.1031	No
131	P3h1	18925	-0.414	-0.1024	No
132	Col12a1	18958	-0.418	-0.0931	No
133	Cdh6	19109	-0.437	-0.0891	No
134	Anpep	19251	-0.457	-0.0842	No
135	Il15	19280	-0.461	-0.0735	No
136	Fgf2	19370	-0.478	-0.0654	No
137	Spp1	19486	-0.505	-0.0579	No
138	Fap	19513	-0.510	-0.0458	No
139	Pmepa1	19595	-0.535	-0.0358	No
140	Nt5e	19807	-0.624	-0.0300	No
141	Tgfbi	19952	-0.761	-0.0173	No
142	Adam12	19972	-0.797	0.0027	No