| Dataset | GMP.GMP.neu_Pheno.cls #Group2_versus_Group4.GMP.neu_Pheno.cls #Group2_versus_Group4_repos |
| Phenotype | GMP.neu_Pheno.cls#Group2_versus_Group4_repos |
| Upregulated in class | 1 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | 0.21146868 |
| Normalized Enrichment Score (NES) | 1.0569927 |
| Nominal p-value | 0.3891129 |
| FDR q-value | 0.6751771 |
| FWER p-Value | 0.961 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Pmaip1 | 96 | 0.838 | 0.0142 | Yes |
| 2 | Bhlhe40 | 112 | 0.820 | 0.0320 | Yes |
| 3 | Xbp1 | 152 | 0.781 | 0.0477 | Yes |
| 4 | Fkbp4 | 256 | 0.701 | 0.0584 | Yes |
| 5 | Gja1 | 318 | 0.672 | 0.0705 | Yes |
| 6 | Akap1 | 369 | 0.652 | 0.0828 | Yes |
| 7 | Blvrb | 378 | 0.649 | 0.0971 | Yes |
| 8 | Rrp12 | 419 | 0.638 | 0.1095 | Yes |
| 9 | Klf4 | 460 | 0.625 | 0.1217 | Yes |
| 10 | Unc119 | 507 | 0.614 | 0.1333 | Yes |
| 11 | Slc16a1 | 538 | 0.608 | 0.1455 | Yes |
| 12 | Sec14l2 | 638 | 0.579 | 0.1537 | Yes |
| 13 | Podxl | 659 | 0.575 | 0.1657 | Yes |
| 14 | Gfra1 | 663 | 0.574 | 0.1785 | Yes |
| 15 | Mybbp1a | 808 | 0.545 | 0.1836 | Yes |
| 16 | Fos | 1092 | 0.496 | 0.1806 | Yes |
| 17 | Slc7a2 | 1106 | 0.494 | 0.1912 | Yes |
| 18 | Asb13 | 1534 | 0.442 | 0.1797 | Yes |
| 19 | Tiparp | 1559 | 0.440 | 0.1884 | Yes |
| 20 | Endod1 | 1657 | 0.431 | 0.1933 | Yes |
| 21 | Il6st | 1741 | 0.423 | 0.1987 | Yes |
| 22 | Mindy1 | 1761 | 0.421 | 0.2073 | Yes |
| 23 | Tpd52l1 | 1978 | 0.402 | 0.2056 | Yes |
| 24 | Dhrs3 | 2152 | 0.391 | 0.2057 | Yes |
| 25 | Farp1 | 2493 | 0.366 | 0.1969 | Yes |
| 26 | Amfr | 2513 | 0.364 | 0.2042 | Yes |
| 27 | Scarb1 | 2586 | 0.357 | 0.2086 | Yes |
| 28 | Stc2 | 2688 | 0.350 | 0.2115 | Yes |
| 29 | Isg20l2 | 3176 | 0.318 | 0.1941 | No |
| 30 | Sema3b | 3227 | 0.315 | 0.1988 | No |
| 31 | Dynlt3 | 3859 | 0.280 | 0.1733 | No |
| 32 | Gla | 3930 | 0.275 | 0.1761 | No |
| 33 | Med13l | 3943 | 0.274 | 0.1817 | No |
| 34 | B4galt1 | 4207 | 0.261 | 0.1743 | No |
| 35 | Pdzk1 | 4237 | 0.259 | 0.1787 | No |
| 36 | Wwc1 | 4238 | 0.259 | 0.1846 | No |
| 37 | Elovl5 | 4390 | 0.250 | 0.1827 | No |
| 38 | Opn3 | 4429 | 0.247 | 0.1863 | No |
| 39 | Fkbp5 | 4511 | 0.242 | 0.1877 | No |
| 40 | Rhod | 4651 | 0.237 | 0.1861 | No |
| 41 | P2ry2 | 4753 | 0.231 | 0.1863 | No |
| 42 | Mpped2 | 4804 | 0.228 | 0.1889 | No |
| 43 | Tmem164 | 4900 | 0.223 | 0.1892 | No |
| 44 | Rab31 | 5391 | 0.197 | 0.1690 | No |
| 45 | Greb1 | 6021 | 0.171 | 0.1412 | No |
| 46 | Flnb | 6177 | 0.163 | 0.1371 | No |
| 47 | Abhd2 | 6520 | 0.149 | 0.1232 | No |
| 48 | Celsr1 | 6521 | 0.149 | 0.1266 | No |
| 49 | Plaat3 | 6618 | 0.143 | 0.1250 | No |
| 50 | Pgr | 6674 | 0.140 | 0.1254 | No |
| 51 | Slc22a5 | 6949 | 0.126 | 0.1145 | No |
| 52 | Nav2 | 6994 | 0.124 | 0.1151 | No |
| 53 | Kazn | 7417 | 0.106 | 0.0962 | No |
| 54 | Fasn | 7623 | 0.097 | 0.0881 | No |
| 55 | Sult2b1 | 7709 | 0.094 | 0.0860 | No |
| 56 | Slc26a2 | 7716 | 0.093 | 0.0878 | No |
| 57 | Klf10 | 7831 | 0.091 | 0.0841 | No |
| 58 | Muc1 | 7905 | 0.088 | 0.0824 | No |
| 59 | Bcl11b | 7928 | 0.087 | 0.0833 | No |
| 60 | Slc37a1 | 8000 | 0.083 | 0.0816 | No |
| 61 | Cyp26b1 | 8007 | 0.083 | 0.0832 | No |
| 62 | Rara | 8019 | 0.082 | 0.0845 | No |
| 63 | Fdft1 | 8277 | 0.071 | 0.0731 | No |
| 64 | Elf1 | 8436 | 0.064 | 0.0666 | No |
| 65 | Adcy9 | 8462 | 0.063 | 0.0668 | No |
| 66 | Bag1 | 8562 | 0.059 | 0.0632 | No |
| 67 | Myof | 8572 | 0.059 | 0.0640 | No |
| 68 | Papss2 | 8932 | 0.043 | 0.0470 | No |
| 69 | Cant1 | 9091 | 0.036 | 0.0398 | No |
| 70 | Itpk1 | 9106 | 0.035 | 0.0399 | No |
| 71 | Tmprss3 | 9115 | 0.035 | 0.0403 | No |
| 72 | Slc7a5 | 9269 | 0.029 | 0.0333 | No |
| 73 | Rapgefl1 | 9297 | 0.028 | 0.0325 | No |
| 74 | Ar | 9497 | 0.018 | 0.0229 | No |
| 75 | Cbfa2t3 | 9547 | 0.016 | 0.0208 | No |
| 76 | Clic3 | 9570 | 0.015 | 0.0200 | No |
| 77 | Aff1 | 9619 | 0.012 | 0.0179 | No |
| 78 | Slc1a1 | 9827 | 0.003 | 0.0075 | No |
| 79 | Tgif2 | 9868 | 0.001 | 0.0056 | No |
| 80 | Snx24 | 9881 | 0.000 | 0.0050 | No |
| 81 | Dlc1 | 10045 | -0.004 | -0.0031 | No |
| 82 | Zfp185 | 10113 | -0.007 | -0.0064 | No |
| 83 | Chpt1 | 10127 | -0.008 | -0.0068 | No |
| 84 | Pex11a | 10315 | -0.015 | -0.0159 | No |
| 85 | Ptges | 10446 | -0.021 | -0.0220 | No |
| 86 | Abat | 10660 | -0.030 | -0.0320 | No |
| 87 | Tiam1 | 10756 | -0.033 | -0.0360 | No |
| 88 | Aldh3b1 | 10757 | -0.033 | -0.0353 | No |
| 89 | Wfs1 | 10761 | -0.033 | -0.0347 | No |
| 90 | Arl3 | 10926 | -0.041 | -0.0421 | No |
| 91 | Jak2 | 11092 | -0.047 | -0.0493 | No |
| 92 | Med24 | 11113 | -0.048 | -0.0492 | No |
| 93 | Ttc39a | 11238 | -0.054 | -0.0542 | No |
| 94 | Igfbp4 | 11438 | -0.064 | -0.0628 | No |
| 95 | Anxa9 | 11477 | -0.065 | -0.0632 | No |
| 96 | Mapt | 11765 | -0.079 | -0.0759 | No |
| 97 | Fhl2 | 11841 | -0.083 | -0.0778 | No |
| 98 | Svil | 12135 | -0.096 | -0.0904 | No |
| 99 | Ugcg | 12157 | -0.097 | -0.0892 | No |
| 100 | Igf1r | 12307 | -0.104 | -0.0944 | No |
| 101 | Ncor2 | 12447 | -0.110 | -0.0989 | No |
| 102 | Dhcr7 | 12580 | -0.114 | -0.1029 | No |
| 103 | Myc | 12714 | -0.119 | -0.1069 | No |
| 104 | Sfn | 12726 | -0.120 | -0.1048 | No |
| 105 | Add3 | 12846 | -0.124 | -0.1079 | No |
| 106 | Slc2a1 | 12993 | -0.132 | -0.1123 | No |
| 107 | Frk | 13047 | -0.134 | -0.1119 | No |
| 108 | Rab17 | 13079 | -0.136 | -0.1104 | No |
| 109 | Slc39a6 | 13174 | -0.141 | -0.1119 | No |
| 110 | Mreg | 13490 | -0.155 | -0.1243 | No |
| 111 | Olfm1 | 13600 | -0.161 | -0.1261 | No |
| 112 | Gab2 | 14276 | -0.194 | -0.1557 | No |
| 113 | Car12 | 14332 | -0.197 | -0.1540 | No |
| 114 | Rbbp8 | 14348 | -0.197 | -0.1503 | No |
| 115 | Hr | 14350 | -0.198 | -0.1459 | No |
| 116 | Inpp5f | 14480 | -0.203 | -0.1478 | No |
| 117 | Tbc1d30 | 14587 | -0.210 | -0.1484 | No |
| 118 | Abca3 | 14684 | -0.214 | -0.1484 | No |
| 119 | Reep1 | 14883 | -0.224 | -0.1532 | No |
| 120 | Calb2 | 15100 | -0.235 | -0.1588 | No |
| 121 | Scnn1a | 15244 | -0.238 | -0.1606 | No |
| 122 | Rps6ka2 | 15452 | -0.249 | -0.1654 | No |
| 123 | Siah2 | 15470 | -0.249 | -0.1606 | No |
| 124 | Myb | 15478 | -0.250 | -0.1553 | No |
| 125 | Kdm4b | 15533 | -0.253 | -0.1523 | No |
| 126 | Krt8 | 15860 | -0.272 | -0.1625 | No |
| 127 | Nxt1 | 16101 | -0.284 | -0.1682 | No |
| 128 | Sybu | 16171 | -0.289 | -0.1651 | No |
| 129 | Slc19a2 | 16220 | -0.291 | -0.1609 | No |
| 130 | Slc27a2 | 16603 | -0.312 | -0.1731 | No |
| 131 | Lrig1 | 16662 | -0.316 | -0.1688 | No |
| 132 | Il17rb | 16675 | -0.316 | -0.1623 | No |
| 133 | Tjp3 | 16966 | -0.335 | -0.1693 | No |
| 134 | Nadsyn1 | 17140 | -0.347 | -0.1701 | No |
| 135 | Cd44 | 17217 | -0.353 | -0.1659 | No |
| 136 | Syngr1 | 17240 | -0.355 | -0.1590 | No |
| 137 | Olfml3 | 17590 | -0.381 | -0.1680 | No |
| 138 | Rasgrp1 | 17646 | -0.385 | -0.1620 | No |
| 139 | Tob1 | 17693 | -0.390 | -0.1555 | No |
| 140 | Rhobtb3 | 17729 | -0.394 | -0.1483 | No |
| 141 | Kcnk5 | 17843 | -0.405 | -0.1448 | No |
| 142 | Ccnd1 | 18272 | -0.442 | -0.1564 | No |
| 143 | Elovl2 | 18299 | -0.446 | -0.1476 | No |
| 144 | Mlph | 18493 | -0.467 | -0.1467 | No |
| 145 | Bcl2 | 18568 | -0.476 | -0.1396 | No |
| 146 | Slc1a4 | 19023 | -0.533 | -0.1504 | No |
| 147 | Slc24a3 | 19047 | -0.537 | -0.1394 | No |
| 148 | Ablim1 | 19097 | -0.545 | -0.1295 | No |
| 149 | Tgm2 | 19177 | -0.561 | -0.1208 | No |
| 150 | Sh3bp5 | 19236 | -0.571 | -0.1108 | No |
| 151 | Cish | 19275 | -0.579 | -0.0996 | No |
| 152 | Thsd4 | 19312 | -0.589 | -0.0881 | No |
| 153 | Ppif | 19422 | -0.617 | -0.0796 | No |
| 154 | Nrip1 | 19449 | -0.624 | -0.0668 | No |
| 155 | Retreg1 | 19451 | -0.625 | -0.0527 | No |
| 156 | Mybl1 | 19494 | -0.636 | -0.0404 | No |
| 157 | Mast4 | 19613 | -0.670 | -0.0311 | No |
| 158 | Deptor | 19676 | -0.697 | -0.0185 | No |
| 159 | Celsr2 | 19805 | -0.757 | -0.0078 | No |
| 160 | Krt18 | 19886 | -0.832 | 0.0070 | No |

