Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group4.GMP.neu_Pheno.cls #Group2_versus_Group4_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.24140035
Normalized Enrichment Score (NES)	1.0361041
Nominal p-value	0.338
FDR q-value	0.6904162
FWER p-Value	0.974

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tnfaip3	126	0.810	0.0135	Yes
2	Tnfrsf12a	143	0.791	0.0321	Yes
3	Gja1	318	0.672	0.0398	Yes
4	Tfpi2	340	0.665	0.0550	Yes
5	Col5a3	343	0.663	0.0712	Yes
6	Cap2	351	0.661	0.0870	Yes
7	Gadd45b	357	0.659	0.1029	Yes
8	Itgb5	385	0.647	0.1174	Yes
9	Rhob	458	0.626	0.1291	Yes
10	Calu	485	0.620	0.1429	Yes
11	Spock1	574	0.598	0.1532	Yes
12	Cadm1	628	0.581	0.1647	Yes
13	Bgn	675	0.572	0.1764	Yes
14	Fbn2	838	0.540	0.1815	Yes
15	Pvr	1040	0.503	0.1837	Yes
16	Dab2	1176	0.485	0.1888	Yes
17	Slc6a8	1238	0.476	0.1974	Yes
18	Sdc1	1579	0.438	0.1910	Yes
19	Thbs2	1602	0.436	0.2006	Yes
20	Lgals1	1699	0.427	0.2062	Yes
21	Dpysl3	2396	0.372	0.1803	Yes
22	Tpm4	2455	0.368	0.1864	Yes
23	Vim	2501	0.365	0.1931	Yes
24	Copa	2774	0.346	0.1879	Yes
25	Basp1	2860	0.340	0.1920	Yes
26	Id2	2952	0.334	0.1956	Yes
27	Tagln	2987	0.331	0.2020	Yes
28	Pcolce2	3061	0.324	0.2063	Yes
29	Cald1	3114	0.322	0.2115	Yes
30	Fn1	3178	0.317	0.2161	Yes
31	Itgb1	3188	0.317	0.2234	Yes
32	Itga5	3594	0.293	0.2103	Yes
33	Htra1	3659	0.291	0.2142	Yes
34	Sfrp4	3704	0.289	0.2190	Yes
35	Ecm1	3732	0.287	0.2247	Yes
36	Inhba	3766	0.284	0.2300	Yes
37	Flna	3805	0.281	0.2350	Yes
38	Gm21451	3822	0.281	0.2411	Yes
39	Mmp2	4078	0.268	0.2348	Yes
40	Ppib	4189	0.263	0.2357	Yes
41	Jun	4204	0.262	0.2414	Yes
42	Lrp1	4440	0.246	0.2356	No
43	Lama1	4659	0.236	0.2304	No
44	Vcam1	4800	0.228	0.2290	No
45	Wipf1	4865	0.225	0.2313	No
46	Notch2	4939	0.220	0.2330	No
47	Vegfa	5197	0.207	0.2251	No
48	Col1a1	5216	0.206	0.2293	No
49	Eno2	5217	0.206	0.2343	No
50	Timp3	5329	0.201	0.2336	No
51	Pcolce	5663	0.188	0.2215	No
52	Vcan	5870	0.177	0.2155	No
53	Col5a2	6459	0.150	0.1896	No
54	Fstl1	6652	0.141	0.1834	No
55	Fbln1	7024	0.122	0.1677	No
56	Plaur	7401	0.107	0.1514	No
57	Mest	7509	0.102	0.1485	No
58	Col1a2	7748	0.092	0.1388	No
59	Nid2	7833	0.091	0.1368	No
60	Itgb3	7922	0.087	0.1345	No
61	Sat1	7949	0.086	0.1353	No
62	Plod3	7990	0.084	0.1354	No
63	Fas	8151	0.077	0.1292	No
64	Fuca1	8477	0.062	0.1144	No
65	Qsox1	8491	0.062	0.1152	No
66	Itgav	8571	0.059	0.1127	No
67	Thy1	8893	0.045	0.0977	No
68	Pdgfrb	8973	0.041	0.0947	No
69	Mcm7	9038	0.038	0.0924	No
70	Ntm	9221	0.031	0.0840	No
71	Plod1	9381	0.023	0.0766	No
72	Tpm2	9464	0.019	0.0730	No
73	Fbln2	9723	0.008	0.0602	No
74	Sparc	9887	0.000	0.0520	No
75	Col11a1	9899	0.000	0.0514	No
76	Loxl1	9903	0.000	0.0513	No
77	Myl9	9917	0.000	0.0506	No
78	Colgalt1	9962	-0.000	0.0484	No
79	Mylk	10007	-0.002	0.0463	No
80	Col4a1	10017	-0.003	0.0459	No
81	Col7a1	10223	-0.011	0.0358	No
82	Cdh2	10350	-0.017	0.0299	No
83	Gadd45a	10586	-0.026	0.0187	No
84	Adam12	11234	-0.054	-0.0125	No
85	Vegfc	11277	-0.056	-0.0132	No
86	P3h1	11363	-0.060	-0.0160	No
87	Lama3	11391	-0.062	-0.0159	No
88	Igfbp4	11438	-0.064	-0.0166	No
89	Magee1	11695	-0.076	-0.0276	No
90	Itga2	11769	-0.079	-0.0294	No
91	Fap	11834	-0.083	-0.0306	No
92	Gpc1	11864	-0.084	-0.0300	No
93	Slit2	11979	-0.089	-0.0335	No
94	Fstl3	11993	-0.090	-0.0320	No
95	Ecm2	12085	-0.094	-0.0342	No
96	Tgfbr3	12405	-0.108	-0.0476	No
97	Cdh6	12699	-0.119	-0.0594	No
98	Thbs1	12740	-0.120	-0.0585	No
99	Spp1	13133	-0.139	-0.0748	No
100	Sgcb	13288	-0.145	-0.0790	No
101	Matn2	13344	-0.147	-0.0782	No
102	Comp	13376	-0.149	-0.0761	No
103	Slit3	14335	-0.197	-0.1194	No
104	Lamc1	14503	-0.205	-0.1228	No
105	Gem	14614	-0.211	-0.1232	No
106	Anpep	14845	-0.222	-0.1293	No
107	Tgfb1	14901	-0.224	-0.1266	No
108	Lama2	14999	-0.229	-0.1258	No
109	Efemp2	15186	-0.236	-0.1294	No
110	Bmp1	15199	-0.237	-0.1242	No
111	Tnc	15710	-0.263	-0.1434	No
112	Fgf2	15818	-0.270	-0.1422	No
113	Mmp14	15946	-0.276	-0.1418	No
114	Fbln5	16030	-0.281	-0.1391	No
115	Col5a1	16150	-0.287	-0.1380	No
116	Fbn1	16420	-0.304	-0.1441	No
117	Dcn	16498	-0.307	-0.1405	No
118	Col12a1	16539	-0.309	-0.1349	No
119	Serpine2	16590	-0.312	-0.1298	No
120	Edil3	16663	-0.316	-0.1257	No
121	Dst	17111	-0.345	-0.1397	No
122	Cd44	17217	-0.353	-0.1364	No
123	Emp3	17358	-0.362	-0.1345	No
124	Col4a2	17395	-0.365	-0.1274	No
125	Tpm1	17419	-0.366	-0.1196	No
126	Pfn2	17521	-0.375	-0.1155	No
127	Fzd8	17529	-0.376	-0.1066	No
128	Col16a1	17622	-0.384	-0.1019	No
129	Postn	17659	-0.387	-0.0942	No
130	Capg	18430	-0.459	-0.1217	No
131	Cdh11	18438	-0.460	-0.1108	No
132	Glipr1	19006	-0.531	-0.1263	No
133	Pdlim4	19116	-0.549	-0.1183	No
134	Tgm2	19177	-0.561	-0.1076	No
135	Nt5e	19531	-0.645	-0.1096	No
136	Tgfbi	19601	-0.667	-0.0967	No
137	Sntb1	19642	-0.683	-0.0820	No
138	Plod2	19778	-0.742	-0.0706	No
139	Pmepa1	19781	-0.743	-0.0525	No
140	Abi3bp	19809	-0.759	-0.0353	No
141	Sgcd	19861	-0.808	-0.0180	No
142	Il15	19997	-1.073	0.0015	No