DatasetGMP.GMP.neu_Pheno.cls
#Group2_versus_Group4.GMP.neu_Pheno.cls
#Group2_versus_Group4_repos
PhenotypeGMP.neu_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class1
GeneSetHALLMARK_E2F_TARGETS
Enrichment Score (ES)0.29014874
Normalized Enrichment Score (NES)1.2947493
Nominal p-value0.18458419
FDR q-value0.44135123
FWER p-Value0.763
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_E2F_TARGETS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Srsf1490.9140.0163Yes
2Ccp1101250.8110.0291Yes
3Dck1280.8060.0456Yes
4Cdkn2c1590.7770.0600Yes
5Xpo13910.6460.0616Yes
6Dnmt14470.6290.0717Yes
7Ncapd24610.6250.0839Yes
8Ddx39a4930.6170.0950Yes
9Ung6850.5700.0971Yes
10Cdc25b8050.5460.1023Yes
11Jpt19050.5270.1081Yes
12Bub1b9800.5140.1149Yes
13Lmnb110660.5010.1209Yes
14Ipo711300.4920.1278Yes
15Zw1011900.4830.1347Yes
16Hmmr12700.4720.1404Yes
17Lbr14490.4530.1407Yes
18Smc1a14550.4520.1498Yes
19Cse1l15010.4470.1566Yes
20Phf5a16260.4340.1593Yes
21Depdc1a18690.4140.1556Yes
22Top2a20030.4010.1571Yes
23Rad2121060.3960.1601Yes
24Plk421270.3940.1671Yes
25Syncrip21800.3890.1725Yes
26Cbx522330.3840.1778Yes
27Dlgap522890.3790.1828Yes
28Ak223000.3790.1900Yes
29Cenpe23100.3780.1973Yes
30Racgap123160.3770.2048Yes
31Melk23580.3740.2104Yes
32Xrcc623710.3730.2175Yes
33Ssrp123940.3720.2240Yes
34Plk124250.3710.2301Yes
35Mybl225170.3640.2329Yes
36Anp32e28990.3370.2206Yes
37Atad230370.3270.2204Yes
38Smc330770.3240.2251Yes
39Nolc131740.3180.2268Yes
40Lsm833820.3070.2227Yes
41Kif433870.3070.2288Yes
42Tacc334200.3050.2334Yes
43Espl134690.3020.2372Yes
44Mki6734710.3020.2433Yes
45Mcm534720.3020.2495Yes
46Hnrnpd36220.2920.2480Yes
47Ppp1r836860.2900.2508Yes
48Mcm437050.2890.2558Yes
49Rrm237480.2850.2595Yes
50Mcm338450.2810.2604Yes
51Mad2l138840.2780.2642Yes
52Ccne138880.2780.2698Yes
53Mcm239140.2760.2742Yes
54Cdca839580.2730.2776Yes
55Lyar40770.2680.2771Yes
56Aurkb43180.2530.2702Yes
57Birc543640.2510.2731Yes
58Nasp43860.2500.2772Yes
59Cks244100.2490.2811Yes
60Hmgb244200.2480.2858Yes
61Tmpo44830.2430.2876Yes
62Rfc146530.2370.2840Yes
63Pcna46920.2350.2869Yes
64Mxd347290.2330.2898Yes
65Mre11a49940.2170.2810Yes
66Cdc25a50990.2120.2801Yes
67Nop5651990.2070.2793Yes
68Nup20553730.1970.2747Yes
69Eif2s154280.1950.2759Yes
70Cdc2054720.1920.2777Yes
71Cdkn1b56870.1870.2708Yes
72Gspt156890.1860.2745Yes
73Tubb556930.1860.2782Yes
74Pold357220.1840.2806Yes
75Tk157320.1840.2839Yes
76Bard158310.1780.2826Yes
77Cit58330.1780.2862Yes
78Msh258800.1770.2875Yes
79Ctcf59000.1750.2901Yes
80Mcm661380.1660.2816No
81Nap1l162320.1610.2802No
82Cdk163880.1530.2755No
83Ilf365510.1470.2704No
84Tbrg466270.1430.2695No
85Lig167260.1370.2674No
86Aurka68660.1290.2630No
87Slbp68860.1280.2647No
88Psip169230.1270.2655No
89Nup10770970.1190.2592No
90Nudt2172380.1120.2544No
91H2az173650.1090.2503No
92Eed74430.1050.2486No
93Rbbp774960.1030.2481No
94Brca175350.1010.2482No
95Ccnb275410.1010.2500No
96Pa2g475930.0980.2495No
97Shmt176530.0960.2485No
98Pnn76930.0940.2484No
99Prkdc78990.0880.2399No
100Spag579110.0880.2411No
101Hells79200.0870.2425No
102Stag180130.0820.2396No
103Kif2c80820.0800.2378No
104Cks1b81090.0780.2381No
105Spc2581100.0780.2397No
106Mthfd281400.0770.2398No
107Usp182040.0750.2382No
108Smc684560.0630.2268No
109Hmga1b88070.0480.2101No
110Tfrc89080.0440.2060No
111Gins389860.0410.2029No
112Kif18b90070.0390.2027No
113Cdkn390310.0390.2024No
114Mcm790380.0380.2029No
115H2ax90590.0380.2026No
116Srsf293500.0250.1885No
117Timeless93700.0240.1881No
118Snrpb94030.0230.1869No
119Chek294250.0210.1863No
120Tra2b94260.0210.1867No
121Nup15394510.0200.1859No
122Suv39h196800.0100.1746No
123Smc410013-0.0030.1579No
124Paics10036-0.0040.1569No
125Dctpp110091-0.0060.1543No
126Ranbp110353-0.0170.1415No
127Dek10357-0.0170.1417No
128Kif2210547-0.0250.1327No
129Wee110897-0.0390.1159No
130Pop710903-0.0390.1164No
131Ezh211050-0.0450.1100No
132Tubg111144-0.0490.1063No
133Rpa111163-0.0500.1064No
134Prim211304-0.0570.1005No
135Nme111437-0.0630.0952No
136Ube2s11608-0.0720.0881No
137Pole411616-0.0720.0892No
138Rad5011645-0.0730.0893No
139Ube2t11735-0.0770.0864No
140E2f811790-0.0800.0853No
141Prps112019-0.0910.0757No
142Cnot912027-0.0920.0772No
143Chek112036-0.0920.0787No
144Dut12231-0.1010.0710No
145Pold112299-0.1040.0697No
146Pan212637-0.1160.0551No
147Nbn12692-0.1180.0548No
148Myc12714-0.1190.0562No
149Pds5b12746-0.1200.0571No
150Wdr9012865-0.1250.0538No
151Ran12934-0.1290.0530No
152Diaph313039-0.1340.0505No
153Asf1b13214-0.1420.0446No
154Pms213292-0.1450.0437No
155Ubr713312-0.1460.0458No
156Mms22l13543-0.1570.0374No
157Tipin13549-0.1580.0404No
158Brca213804-0.1710.0311No
159Psmc3ip14173-0.1890.0164No
160Cdk414186-0.1900.0197No
161Donson14300-0.1950.0180No
162Pttg114471-0.2030.0136No
163Brms1l14663-0.2130.0083No
164Cdkn1a14725-0.2160.0097No
165Rad51c14754-0.2170.0127No
166Luc7l314840-0.2220.0130No
167Pold214843-0.2220.0175No
168Ppm1d14984-0.2280.0151No
169Rnaseh2a15030-0.2310.0175No
170Cdca315292-0.2410.0093No
171Exosc815356-0.2440.0112No
172Rad51ap115420-0.2470.0131No
173Spc2415535-0.2530.0125No
174Mlh115615-0.2580.0138No
175Trip1315830-0.2700.0086No
176Hus116165-0.288-0.0024No
177Gins116371-0.301-0.0065No
178Hmgb316994-0.337-0.0310No
179Orc217045-0.341-0.0265No
180Pole17083-0.344-0.0214No
181Ing317444-0.368-0.0320No
182Rad117458-0.370-0.0250No
183Pola217572-0.380-0.0229No
184Asf1a17640-0.385-0.0184No
185Dclre1b17825-0.404-0.0194No
186Trp5317850-0.406-0.0123No
187Dscc117943-0.412-0.0085No
188Rpa218208-0.437-0.0128No
189Rfc218342-0.450-0.0103No
190Tcf1918432-0.459-0.0054No
191Orc618584-0.477-0.0032No
192Rpa318700-0.4870.0010No
193Cenpm18830-0.5040.0048No
194Gins419089-0.5440.0030No
195Rfc319573-0.657-0.0079No
196Prdx419600-0.6660.0044No
197Stmn119880-0.8280.0074No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_E2F_TARGETS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_E2F_TARGETS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_E2F_TARGETS