Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	-0.22040024
Normalized Enrichment Score (NES)	-0.97118974
Nominal p-value	0.52390057
FDR q-value	0.7920956
FWER p-Value	0.989

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Abca1	76	0.792	0.0134	No
2	Fosb	120	0.722	0.0270	No
3	Gpr183	163	0.685	0.0398	No
4	Csf1	222	0.655	0.0512	No
5	Dusp1	340	0.605	0.0585	No
6	Klf2	354	0.599	0.0709	No
7	Klf4	451	0.573	0.0785	No
8	Bhlhe40	482	0.565	0.0893	No
9	Mcl1	495	0.562	0.1010	No
10	Bcl3	499	0.561	0.1131	No
11	Ptgs2	620	0.527	0.1185	No
12	Plk2	733	0.505	0.1239	No
13	Sphk1	908	0.478	0.1255	No
14	Maff	968	0.469	0.1328	No
15	Tnfaip2	1161	0.445	0.1328	No
16	Socs3	1539	0.403	0.1226	No
17	Dnajb4	1776	0.383	0.1191	No
18	Sat1	2051	0.361	0.1132	No
19	Gadd45a	2075	0.360	0.1198	No
20	Ier2	2133	0.354	0.1247	No
21	Dusp5	2288	0.342	0.1244	No
22	Hbegf	2373	0.336	0.1275	No
23	Il6st	2524	0.322	0.1269	No
24	Tgif1	2650	0.315	0.1275	No
25	Cxcl10	2947	0.295	0.1190	No
26	Tiparp	2980	0.293	0.1238	No
27	Klf6	2992	0.292	0.1296	No
28	Egr1	3052	0.289	0.1330	No
29	Irs2	3138	0.282	0.1348	No
30	Pdlim5	3140	0.282	0.1409	No
31	Cebpb	3300	0.274	0.1389	No
32	Inhba	3515	0.263	0.1339	No
33	Atp2b1	3562	0.260	0.1372	No
34	Ifngr2	3624	0.257	0.1397	No
35	Ifih1	3844	0.245	0.1340	No
36	Rigi	4053	0.235	0.1287	No
37	Birc2	4145	0.230	0.1291	No
38	B4galt5	4171	0.228	0.1328	No
39	Klf9	4635	0.204	0.1140	No
40	Map2k3	4677	0.201	0.1163	No
41	Sgk1	4808	0.194	0.1139	No
42	Fos	4872	0.191	0.1149	No
43	Bcl2a1d	4941	0.189	0.1156	No
44	Btg1	5059	0.184	0.1138	No
45	Jun	5099	0.182	0.1158	No
46	Fosl2	5240	0.175	0.1125	No
47	B4galt1	5275	0.174	0.1146	No
48	Tnc	5282	0.173	0.1181	No
49	Sqstm1	5411	0.168	0.1153	No
50	Cd69	5432	0.167	0.1179	No
51	Cdkn1a	5553	0.161	0.1154	No
52	Nr4a1	5674	0.155	0.1127	No
53	Icam1	5676	0.155	0.1160	No
54	Pfkfb3	5694	0.154	0.1185	No
55	Il7r	5724	0.153	0.1204	No
56	Dennd5a	5899	0.145	0.1148	No
57	Rhob	6013	0.140	0.1122	No
58	Zfp36	6054	0.138	0.1132	No
59	Bcl6	6103	0.136	0.1137	No
60	Ifit2	6168	0.133	0.1134	No
61	Irf1	6321	0.127	0.1085	No
62	Rnf19b	6520	0.120	0.1011	No
63	Nr4a3	6609	0.116	0.0992	No
64	Ccnl1	6998	0.100	0.0819	No
65	Plpp3	7079	0.097	0.0800	No
66	Sod2	7138	0.094	0.0791	No
67	Tnip2	7517	0.078	0.0617	No
68	Smad3	7555	0.076	0.0615	No
69	Vegfa	7594	0.074	0.0612	No
70	Birc3	7646	0.072	0.0602	No
71	Btg3	8122	0.052	0.0375	No
72	Ldlr	8219	0.048	0.0337	No
73	Slc16a6	8318	0.043	0.0297	No
74	Zbtb10	8335	0.042	0.0298	No
75	Egr2	8366	0.041	0.0292	No
76	Atf3	8529	0.035	0.0218	No
77	Serpinb8	8556	0.033	0.0212	No
78	Nfil3	8897	0.017	0.0044	No
79	Nfat5	8904	0.017	0.0045	No
80	Yrdc	8982	0.013	0.0009	No
81	Fut4	8986	0.013	0.0010	No
82	Cflar	8988	0.013	0.0013	No
83	Tubb2a	9070	0.010	-0.0026	No
84	Tank	9077	0.009	-0.0027	No
85	Dram1	9127	0.007	-0.0050	No
86	Stat5a	9157	0.006	-0.0064	No
87	Tnfaip8	9224	0.003	-0.0096	No
88	Trip10	9256	0.002	-0.0111	No
89	Ninj1	9267	0.001	-0.0116	No
90	Junb	9468	-0.006	-0.0216	No
91	Nfkb2	9773	-0.020	-0.0364	No
92	Ptger4	9876	-0.023	-0.0411	No
93	Map3k8	9878	-0.023	-0.0406	No
94	Ripk2	9910	-0.024	-0.0417	No
95	Plaur	9953	-0.026	-0.0432	No
96	Slc2a6	10094	-0.032	-0.0496	No
97	Panx1	10242	-0.040	-0.0561	No
98	Klf10	10375	-0.045	-0.0618	No
99	Tap1	10753	-0.060	-0.0795	No
100	Id2	11101	-0.073	-0.0953	No
101	Nampt	11136	-0.074	-0.0954	No
102	Rel	11242	-0.079	-0.0990	No
103	Il15ra	11253	-0.079	-0.0978	No
104	Tnf	11302	-0.081	-0.0984	No
105	Gfpt2	11337	-0.083	-0.0983	No
106	Btg2	11381	-0.085	-0.0987	No
107	Cebpd	11399	-0.086	-0.0976	No
108	Plek	11530	-0.091	-0.1022	No
109	Cd80	11731	-0.100	-0.1101	No
110	Gadd45b	11789	-0.102	-0.1107	No
111	G0s2	11798	-0.103	-0.1089	No
112	Nfe2l2	12404	-0.129	-0.1366	No
113	Nfkbie	12697	-0.144	-0.1481	No
114	Nfkb1	12793	-0.148	-0.1497	No
115	Tlr2	12844	-0.150	-0.1489	No
116	Dusp4	13402	-0.175	-0.1732	No
117	Snn	13954	-0.199	-0.1966	No
118	Eif1	14039	-0.204	-0.1964	No
119	Tnfaip6	14105	-0.207	-0.1951	No
120	Zc3h12a	14608	-0.232	-0.2153	Yes
121	Ppp1r15a	14617	-0.233	-0.2107	Yes
122	Gch1	14743	-0.240	-0.2117	Yes
123	Rela	14836	-0.245	-0.2110	Yes
124	Cd44	14858	-0.246	-0.2067	Yes
125	Ets2	14898	-0.248	-0.2032	Yes
126	Tnip1	14906	-0.248	-0.1982	Yes
127	Kdm6b	15079	-0.256	-0.2013	Yes
128	Fjx1	15155	-0.259	-0.1994	Yes
129	Tnfrsf9	15191	-0.261	-0.1955	Yes
130	Traf1	15197	-0.261	-0.1900	Yes
131	Ptpre	15400	-0.272	-0.1943	Yes
132	Tnfaip3	15746	-0.291	-0.2053	Yes
133	Tnfsf9	15893	-0.300	-0.2061	Yes
134	Per1	15963	-0.304	-0.2029	Yes
135	Ier5	16017	-0.307	-0.1989	Yes
136	Mxd1	16103	-0.313	-0.1964	Yes
137	Dusp2	16129	-0.314	-0.1908	Yes
138	Fosl1	16402	-0.328	-0.1973	Yes
139	Kynu	16521	-0.334	-0.1960	Yes
140	Nfkbia	16843	-0.355	-0.2044	Yes
141	Lamb3	16909	-0.358	-0.1999	Yes
142	Myc	17216	-0.379	-0.2071	Yes
143	Pmepa1	17358	-0.389	-0.2057	Yes
144	Gem	17395	-0.391	-0.1990	Yes
145	Jag1	17542	-0.402	-0.1976	Yes
146	Litaf	17588	-0.405	-0.1910	Yes
147	Tsc22d1	17937	-0.437	-0.1990	Yes
148	Spsb1	18078	-0.450	-0.1962	Yes
149	Relb	18357	-0.477	-0.1998	Yes
150	Plau	18414	-0.484	-0.1921	Yes
151	F3	18696	-0.516	-0.1950	Yes
152	Ccrl2	18774	-0.527	-0.1874	Yes
153	Olr1	18851	-0.539	-0.1795	Yes
154	Marcks	19032	-0.566	-0.1762	Yes
155	Nr4a2	19055	-0.570	-0.1649	Yes
156	Icosl	19084	-0.575	-0.1537	Yes
157	F2rl1	19205	-0.598	-0.1468	Yes
158	Slc2a3	19280	-0.613	-0.1371	Yes
159	Rcan1	19286	-0.616	-0.1240	Yes
160	Phlda1	19305	-0.620	-0.1113	Yes
161	Serpinb2	19349	-0.631	-0.0997	Yes
162	Ehd1	19393	-0.642	-0.0879	Yes
163	Pnrc1	19401	-0.644	-0.0742	Yes
164	Trib1	19598	-0.702	-0.0688	Yes
165	Pde4b	19673	-0.734	-0.0565	Yes
166	Il18	19697	-0.743	-0.0415	Yes
167	Ier3	19736	-0.767	-0.0267	Yes
168	Clcf1	19872	-0.867	-0.0146	Yes
169	Ccnd1	19976	-1.022	0.0025	Yes