Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	-0.20074287
Normalized Enrichment Score (NES)	-0.8962299
Nominal p-value	0.6970297
FDR q-value	0.83781976
FWER p-Value	0.997

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Pim1	110	0.739	0.0115	No
2	Jmjd6	193	0.668	0.0228	No
3	Dusp1	340	0.605	0.0294	No
4	Sap30	390	0.586	0.0405	No
5	Hspa5	395	0.586	0.0538	No
6	Cdkn1c	456	0.571	0.0639	No
7	Bhlhe40	482	0.565	0.0757	No
8	Ppargc1a	639	0.523	0.0799	No
9	P4ha1	640	0.523	0.0920	No
10	Tgfb3	833	0.488	0.0936	No
11	Cdkn1b	951	0.472	0.0986	No
12	Maff	968	0.469	0.1086	No
13	Ero1a	1099	0.452	0.1125	No
14	Hdlbp	1110	0.450	0.1224	No
15	Myh9	1177	0.443	0.1293	No
16	Tpd52	1251	0.434	0.1356	No
17	Hmox1	1457	0.411	0.1348	No
18	Pfkp	1603	0.399	0.1367	No
19	Anxa2	1690	0.391	0.1414	No
20	Gpi1	2104	0.357	0.1288	No
21	Ugp2	2138	0.353	0.1353	No
22	S100a4	2187	0.351	0.1410	No
23	Ndrg1	2375	0.335	0.1393	No
24	Aldoa	2442	0.329	0.1436	No
25	Egfr	2687	0.313	0.1385	No
26	Phkg1	2810	0.304	0.1394	No
27	Foxo3	2872	0.299	0.1432	No
28	Plin2	2978	0.293	0.1447	No
29	Tiparp	2980	0.293	0.1514	No
30	Klf6	2992	0.292	0.1576	No
31	Irs2	3138	0.282	0.1568	No
32	Pdgfb	3201	0.279	0.1601	No
33	Noct	3330	0.273	0.1600	No
34	Large1	4108	0.231	0.1262	No
35	Bgn	4134	0.230	0.1303	No
36	Nr3c1	4572	0.207	0.1131	No
37	Rragd	4600	0.206	0.1164	No
38	Pgm2	4663	0.201	0.1180	No
39	Fos	4872	0.191	0.1119	No
40	Slc6a6	5048	0.185	0.1074	No
41	Btg1	5059	0.184	0.1111	No
42	Jun	5099	0.182	0.1133	No
43	Ampd3	5110	0.182	0.1170	No
44	Fosl2	5240	0.175	0.1146	No
45	Chst3	5313	0.173	0.1149	No
46	Rora	5386	0.169	0.1152	No
47	Col5a1	5405	0.168	0.1182	No
48	Tpi1	5439	0.166	0.1204	No
49	Ddit4	5473	0.164	0.1225	No
50	Akap12	5518	0.162	0.1240	No
51	Cdkn1a	5553	0.161	0.1260	No
52	Pfkfb3	5694	0.154	0.1225	No
53	Vhl	5719	0.153	0.1248	No
54	Klhl24	5870	0.146	0.1207	No
55	Zfp292	5948	0.143	0.1201	No
56	B4galnt2	6051	0.138	0.1181	No
57	Zfp36	6054	0.138	0.1212	No
58	Map3k1	6979	0.101	0.0770	No
59	Klf7	7001	0.100	0.0783	No
60	Car12	7139	0.094	0.0736	No
61	Isg20	7443	0.081	0.0602	No
62	Mt1	7574	0.075	0.0554	No
63	Vegfa	7594	0.074	0.0561	No
64	Gpc3	7679	0.070	0.0535	No
65	Gaa	7945	0.059	0.0416	No
66	Pgk1	7995	0.058	0.0404	No
67	Ldhc	8271	0.045	0.0276	No
68	Xpnpep1	8363	0.041	0.0240	No
69	Sdc3	8469	0.037	0.0196	No
70	Atf3	8529	0.035	0.0174	No
71	Nfil3	8897	0.017	-0.0007	No
72	Mxi1	8908	0.017	-0.0008	No
73	Pgam2	8953	0.015	-0.0027	No
74	Gpc4	9024	0.012	-0.0059	No
75	Ldha	9285	0.000	-0.0190	No
76	Ak4	9393	-0.003	-0.0243	No
77	Pfkl	9597	-0.012	-0.0343	No
78	Scarb1	9656	-0.015	-0.0368	No
79	Ccng2	9664	-0.015	-0.0369	No
80	Tes	9714	-0.018	-0.0389	No
81	Gbe1	9826	-0.022	-0.0440	No
82	Pdk3	9832	-0.022	-0.0437	No
83	Slc2a5	9907	-0.024	-0.0469	No
84	Plaur	9953	-0.026	-0.0486	No
85	Wsb1	10080	-0.032	-0.0542	No
86	Kdm3a	10096	-0.033	-0.0542	No
87	Kif5a	10248	-0.040	-0.0609	No
88	Ankzf1	10450	-0.048	-0.0699	No
89	Ndst2	10957	-0.069	-0.0938	No
90	Pdk1	10981	-0.070	-0.0933	No
91	Slc37a4	11086	-0.072	-0.0969	No
92	Csrp2	11180	-0.076	-0.0998	No
93	Nedd4l	11203	-0.077	-0.0991	No
94	Pygm	11244	-0.079	-0.0993	No
95	Stc2	11462	-0.088	-0.1082	No
96	Hk1	11764	-0.101	-0.1210	No
97	Mif	11887	-0.107	-0.1247	No
98	Ets1	11967	-0.110	-0.1261	No
99	Tpst2	11971	-0.111	-0.1237	No
100	Fam162a	12089	-0.116	-0.1269	No
101	Hs3st1	12375	-0.127	-0.1383	No
102	Plac8	12441	-0.131	-0.1386	No
103	Tgfbi	12481	-0.133	-0.1375	No
104	Hk2	12519	-0.136	-0.1362	No
105	Pgm1	12638	-0.141	-0.1389	No
106	Pklr	12782	-0.147	-0.1427	No
107	Dtna	12787	-0.148	-0.1395	No
108	Dcn	12946	-0.155	-0.1439	No
109	Rbpj	13010	-0.157	-0.1434	No
110	Hexa	13279	-0.168	-0.1530	No
111	Slc2a1	13459	-0.178	-0.1579	No
112	Ndst1	13467	-0.178	-0.1542	No
113	Galk1	13784	-0.192	-0.1656	No
114	Eno3	13963	-0.200	-0.1700	No
115	Slc25a1	14025	-0.203	-0.1684	No
116	Pam	14274	-0.217	-0.1759	No
117	Cavin1	14435	-0.225	-0.1787	No
118	Aldoc	14502	-0.228	-0.1768	No
119	Gys1	14552	-0.230	-0.1739	No
120	Ppp1r15a	14617	-0.233	-0.1718	No
121	Lxn	14766	-0.242	-0.1736	No
122	Gcnt2	14804	-0.244	-0.1699	No
123	Casp6	14824	-0.245	-0.1652	No
124	Bnip3l	14829	-0.245	-0.1597	No
125	Cp	14848	-0.246	-0.1550	No
126	Ids	15053	-0.254	-0.1594	No
127	Eno1b	15521	-0.279	-0.1764	No
128	Vldlr	15624	-0.285	-0.1750	No
129	Tnfaip3	15746	-0.291	-0.1744	No
130	Adora2b	15748	-0.291	-0.1677	No
131	Ext1	15798	-0.294	-0.1634	No
132	B3galt6	15826	-0.296	-0.1579	No
133	Cav1	15866	-0.298	-0.1530	No
134	Gpc1	16152	-0.314	-0.1601	No
135	Glrx	16429	-0.329	-0.1664	No
136	Grhpr	16702	-0.345	-0.1721	No
137	Tgm2	16879	-0.357	-0.1727	No
138	Siah2	17187	-0.377	-0.1795	No
139	Cxcr4	17610	-0.407	-0.1914	Yes
140	Kdelr3	17735	-0.419	-0.1879	Yes
141	Eno2	17864	-0.431	-0.1844	Yes
142	Tmem45a	17902	-0.434	-0.1763	Yes
143	Errfi1	17961	-0.440	-0.1690	Yes
144	Prkca	18274	-0.469	-0.1739	Yes
145	F3	18696	-0.516	-0.1832	Yes
146	Atp7a	18782	-0.529	-0.1753	Yes
147	Sult2b1	18838	-0.538	-0.1657	Yes
148	Ddit3	18849	-0.539	-0.1537	Yes
149	Nagk	18853	-0.539	-0.1414	Yes
150	Cited2	18873	-0.541	-0.1299	Yes
151	Fbp1	18876	-0.541	-0.1175	Yes
152	Ppfia4	19041	-0.567	-0.1127	Yes
153	Gapdhs	19185	-0.593	-0.1062	Yes
154	Bcl2	19197	-0.596	-0.0930	Yes
155	Slc2a3	19280	-0.613	-0.0830	Yes
156	Selenbp1	19330	-0.627	-0.0710	Yes
157	Pnrc1	19401	-0.644	-0.0596	Yes
158	Sdc2	19503	-0.670	-0.0493	Yes
159	Angptl4	19515	-0.673	-0.0343	Yes
160	Ier3	19736	-0.767	-0.0277	Yes
161	Prdx5	19749	-0.777	-0.0103	Yes
162	Ilvbl	19978	-1.050	0.0024	Yes