| Dataset | GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos |
| Phenotype | GMP.neu_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 1 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | 0.18543218 |
| Normalized Enrichment Score (NES) | 0.9449365 |
| Nominal p-value | 0.6102941 |
| FDR q-value | 0.8038693 |
| FWER p-Value | 0.992 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Myof | 6 | 1.106 | 0.0277 | Yes |
| 2 | Cacna2d2 | 11 | 1.040 | 0.0539 | Yes |
| 3 | Tfpi2 | 127 | 0.715 | 0.0662 | Yes |
| 4 | Lsr | 378 | 0.592 | 0.0687 | Yes |
| 5 | Klf4 | 451 | 0.573 | 0.0796 | Yes |
| 6 | Gper1 | 535 | 0.550 | 0.0893 | Yes |
| 7 | Frk | 877 | 0.483 | 0.0844 | Yes |
| 8 | Xbp1 | 883 | 0.482 | 0.0964 | Yes |
| 9 | Arl3 | 1046 | 0.459 | 0.0999 | Yes |
| 10 | S100a9 | 1157 | 0.445 | 0.1056 | Yes |
| 11 | Plk4 | 1208 | 0.439 | 0.1142 | Yes |
| 12 | Tnnc1 | 1234 | 0.435 | 0.1240 | Yes |
| 13 | Kif20a | 1379 | 0.418 | 0.1274 | Yes |
| 14 | Fabp5 | 1462 | 0.410 | 0.1336 | Yes |
| 15 | Cdc6 | 1495 | 0.407 | 0.1423 | Yes |
| 16 | Jak1 | 1542 | 0.403 | 0.1502 | Yes |
| 17 | Hr | 1724 | 0.388 | 0.1509 | Yes |
| 18 | Amfr | 1986 | 0.367 | 0.1471 | Yes |
| 19 | Ugdh | 2146 | 0.353 | 0.1481 | Yes |
| 20 | Aldh3a2 | 2158 | 0.352 | 0.1565 | Yes |
| 21 | Mest | 2170 | 0.351 | 0.1648 | Yes |
| 22 | Llgl2 | 2244 | 0.345 | 0.1699 | Yes |
| 23 | Top2a | 2252 | 0.345 | 0.1783 | Yes |
| 24 | Fkbp4 | 2428 | 0.330 | 0.1778 | Yes |
| 25 | Il6st | 2524 | 0.322 | 0.1812 | Yes |
| 26 | Slc26a2 | 2817 | 0.304 | 0.1742 | Yes |
| 27 | Farp1 | 2876 | 0.299 | 0.1789 | Yes |
| 28 | Elovl5 | 2897 | 0.297 | 0.1854 | Yes |
| 29 | Fkbp5 | 3136 | 0.283 | 0.1806 | No |
| 30 | Mapt | 3344 | 0.272 | 0.1771 | No |
| 31 | Hspa4l | 3360 | 0.271 | 0.1832 | No |
| 32 | Gla | 3599 | 0.258 | 0.1778 | No |
| 33 | Jak2 | 3861 | 0.244 | 0.1708 | No |
| 34 | Ltf | 3978 | 0.239 | 0.1710 | No |
| 35 | Large1 | 4108 | 0.231 | 0.1704 | No |
| 36 | Abca3 | 4349 | 0.218 | 0.1639 | No |
| 37 | Sgk1 | 4808 | 0.194 | 0.1457 | No |
| 38 | Fos | 4872 | 0.191 | 0.1474 | No |
| 39 | Cpe | 4920 | 0.189 | 0.1498 | No |
| 40 | Gfus | 5105 | 0.182 | 0.1452 | No |
| 41 | Gjb3 | 5190 | 0.178 | 0.1455 | No |
| 42 | Ptpn6 | 5429 | 0.167 | 0.1377 | No |
| 43 | Batf | 5475 | 0.164 | 0.1396 | No |
| 44 | Dhcr7 | 5476 | 0.164 | 0.1438 | No |
| 45 | Plaat3 | 5491 | 0.163 | 0.1472 | No |
| 46 | Slc16a1 | 5545 | 0.161 | 0.1486 | No |
| 47 | Slc22a5 | 5582 | 0.160 | 0.1509 | No |
| 48 | Ptger3 | 5658 | 0.156 | 0.1511 | No |
| 49 | Fdft1 | 5902 | 0.145 | 0.1425 | No |
| 50 | Slc7a5 | 6026 | 0.139 | 0.1398 | No |
| 51 | Zfp36 | 6054 | 0.138 | 0.1420 | No |
| 52 | Mapk13 | 6215 | 0.131 | 0.1373 | No |
| 53 | Abhd2 | 6355 | 0.125 | 0.1334 | No |
| 54 | Stil | 6873 | 0.106 | 0.1101 | No |
| 55 | St6galnac2 | 6942 | 0.103 | 0.1093 | No |
| 56 | Car12 | 7139 | 0.094 | 0.1018 | No |
| 57 | Etfb | 7382 | 0.085 | 0.0918 | No |
| 58 | Isg20 | 7443 | 0.081 | 0.0908 | No |
| 59 | Chst8 | 7648 | 0.072 | 0.0824 | No |
| 60 | Slc1a4 | 7706 | 0.069 | 0.0813 | No |
| 61 | Aldh3b1 | 7754 | 0.068 | 0.0806 | No |
| 62 | Clic3 | 7767 | 0.068 | 0.0817 | No |
| 63 | Rabep1 | 7993 | 0.058 | 0.0719 | No |
| 64 | Sema3b | 8059 | 0.055 | 0.0700 | No |
| 65 | Btg3 | 8122 | 0.052 | 0.0682 | No |
| 66 | Nab2 | 8209 | 0.048 | 0.0651 | No |
| 67 | Gins2 | 8465 | 0.038 | 0.0532 | No |
| 68 | Mettl3 | 8516 | 0.035 | 0.0516 | No |
| 69 | Ptges | 8583 | 0.032 | 0.0491 | No |
| 70 | Mocs2 | 8618 | 0.030 | 0.0482 | No |
| 71 | Anxa9 | 8715 | 0.025 | 0.0440 | No |
| 72 | Tiam1 | 8823 | 0.020 | 0.0391 | No |
| 73 | Tjp3 | 8830 | 0.020 | 0.0393 | No |
| 74 | Rab31 | 8876 | 0.018 | 0.0375 | No |
| 75 | Plac1 | 9218 | 0.003 | 0.0204 | No |
| 76 | Papss2 | 9236 | 0.002 | 0.0196 | No |
| 77 | Aff1 | 9437 | -0.005 | 0.0097 | No |
| 78 | Sfn | 9523 | -0.009 | 0.0056 | No |
| 79 | Scarb1 | 9656 | -0.015 | -0.0006 | No |
| 80 | Cyp26b1 | 9713 | -0.018 | -0.0030 | No |
| 81 | Scube2 | 9836 | -0.023 | -0.0086 | No |
| 82 | Flnb | 9938 | -0.025 | -0.0130 | No |
| 83 | Dnajc1 | 10105 | -0.033 | -0.0205 | No |
| 84 | Bag1 | 10161 | -0.036 | -0.0224 | No |
| 85 | Itpk1 | 10222 | -0.038 | -0.0244 | No |
| 86 | Xrcc3 | 10243 | -0.040 | -0.0244 | No |
| 87 | Rbbp8 | 10478 | -0.049 | -0.0350 | No |
| 88 | Opn3 | 10525 | -0.051 | -0.0360 | No |
| 89 | Impa2 | 10543 | -0.052 | -0.0355 | No |
| 90 | Tmprss3 | 10572 | -0.053 | -0.0356 | No |
| 91 | Olfm1 | 11063 | -0.071 | -0.0584 | No |
| 92 | Id2 | 11101 | -0.073 | -0.0585 | No |
| 93 | Sord | 11109 | -0.073 | -0.0570 | No |
| 94 | Tspan13 | 11188 | -0.077 | -0.0589 | No |
| 95 | Pgr | 11256 | -0.079 | -0.0603 | No |
| 96 | Mdk | 11268 | -0.080 | -0.0588 | No |
| 97 | Dlg5 | 11946 | -0.110 | -0.0901 | No |
| 98 | Tst | 11993 | -0.112 | -0.0896 | No |
| 99 | Igfbp4 | 12084 | -0.116 | -0.0912 | No |
| 100 | Snx10 | 12326 | -0.125 | -0.1001 | No |
| 101 | Cox6c | 12444 | -0.131 | -0.1027 | No |
| 102 | Wfs1 | 12500 | -0.134 | -0.1021 | No |
| 103 | Blvrb | 12615 | -0.139 | -0.1043 | No |
| 104 | Chpt1 | 12679 | -0.143 | -0.1038 | No |
| 105 | Hmgcs2 | 12752 | -0.146 | -0.1037 | No |
| 106 | Cdc20 | 12882 | -0.152 | -0.1064 | No |
| 107 | Add3 | 12911 | -0.153 | -0.1039 | No |
| 108 | Homer2 | 13153 | -0.163 | -0.1119 | No |
| 109 | Ncor2 | 13472 | -0.178 | -0.1234 | No |
| 110 | St14 | 13549 | -0.182 | -0.1226 | No |
| 111 | Tpd52l1 | 13897 | -0.197 | -0.1351 | No |
| 112 | Rps6ka2 | 13964 | -0.200 | -0.1333 | No |
| 113 | Kcnk5 | 13965 | -0.200 | -0.1282 | No |
| 114 | Slc29a1 | 13971 | -0.200 | -0.1234 | No |
| 115 | Pdcd4 | 14270 | -0.216 | -0.1329 | No |
| 116 | Scnn1a | 14633 | -0.234 | -0.1452 | No |
| 117 | Unc13b | 14744 | -0.240 | -0.1446 | No |
| 118 | Cd44 | 14858 | -0.246 | -0.1441 | No |
| 119 | Pkp3 | 15258 | -0.264 | -0.1575 | No |
| 120 | Myb | 15460 | -0.275 | -0.1606 | No |
| 121 | Cav1 | 15866 | -0.298 | -0.1734 | No |
| 122 | Slc27a2 | 15906 | -0.301 | -0.1677 | No |
| 123 | Cish | 16122 | -0.314 | -0.1706 | No |
| 124 | Dusp2 | 16129 | -0.314 | -0.1629 | No |
| 125 | Cd9 | 16206 | -0.318 | -0.1587 | No |
| 126 | Idh2 | 16444 | -0.330 | -0.1623 | No |
| 127 | Dynlt3 | 16495 | -0.332 | -0.1564 | No |
| 128 | Atp2b4 | 16568 | -0.337 | -0.1514 | No |
| 129 | Prlr | 16639 | -0.341 | -0.1463 | No |
| 130 | Prkar2b | 16754 | -0.348 | -0.1432 | No |
| 131 | Nxt1 | 16908 | -0.358 | -0.1419 | No |
| 132 | Siah2 | 17187 | -0.377 | -0.1463 | No |
| 133 | Slc2a8 | 17442 | -0.394 | -0.1491 | No |
| 134 | Rapgefl1 | 17486 | -0.398 | -0.1412 | No |
| 135 | Car2 | 17746 | -0.420 | -0.1435 | No |
| 136 | Il17rb | 17852 | -0.430 | -0.1379 | No |
| 137 | Perp | 18199 | -0.461 | -0.1436 | No |
| 138 | Tob1 | 18354 | -0.477 | -0.1393 | No |
| 139 | Slc24a3 | 18486 | -0.491 | -0.1334 | No |
| 140 | Cdh1 | 18493 | -0.492 | -0.1212 | No |
| 141 | Dnajc12 | 18603 | -0.504 | -0.1139 | No |
| 142 | Pdzk1 | 18634 | -0.508 | -0.1026 | No |
| 143 | Dcxr | 18673 | -0.512 | -0.0915 | No |
| 144 | Sult2b1 | 18838 | -0.538 | -0.0861 | No |
| 145 | Ass1 | 18993 | -0.561 | -0.0797 | No |
| 146 | Gale | 19132 | -0.583 | -0.0718 | No |
| 147 | Bcl2 | 19197 | -0.596 | -0.0599 | No |
| 148 | Rnaseh2a | 19198 | -0.596 | -0.0448 | No |
| 149 | Nrip1 | 19594 | -0.702 | -0.0469 | No |
| 150 | Ppif | 19721 | -0.755 | -0.0341 | No |
| 151 | Celsr2 | 19924 | -0.925 | -0.0208 | No |
| 152 | Ccnd1 | 19976 | -1.022 | 0.0025 | No |

