| Dataset | GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos |
| Phenotype | GMP.neu_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.24543357 |
| Normalized Enrichment Score (NES) | -1.05125 |
| Nominal p-value | 0.3597561 |
| FDR q-value | 1.0 |
| FWER p-Value | 0.977 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Myof | 6 | 1.106 | 0.0260 | No |
| 2 | Asb13 | 130 | 0.713 | 0.0367 | No |
| 3 | Rrp12 | 268 | 0.634 | 0.0448 | No |
| 4 | Klf4 | 451 | 0.573 | 0.0492 | No |
| 5 | Bhlhe40 | 482 | 0.565 | 0.0611 | No |
| 6 | Unc119 | 756 | 0.499 | 0.0593 | No |
| 7 | Dhrs3 | 788 | 0.494 | 0.0694 | No |
| 8 | Frk | 877 | 0.483 | 0.0764 | No |
| 9 | Xbp1 | 883 | 0.482 | 0.0876 | No |
| 10 | Mybbp1a | 964 | 0.470 | 0.0948 | No |
| 11 | Arl3 | 1046 | 0.459 | 0.1016 | No |
| 12 | Podxl | 1529 | 0.404 | 0.0869 | No |
| 13 | Hr | 1724 | 0.388 | 0.0864 | No |
| 14 | Isg20l2 | 1860 | 0.376 | 0.0885 | No |
| 15 | Amfr | 1986 | 0.367 | 0.0909 | No |
| 16 | Muc1 | 2195 | 0.350 | 0.0887 | No |
| 17 | Gja1 | 2280 | 0.342 | 0.0926 | No |
| 18 | Med24 | 2423 | 0.331 | 0.0933 | No |
| 19 | Fkbp4 | 2428 | 0.330 | 0.1010 | No |
| 20 | Il6st | 2524 | 0.322 | 0.1038 | No |
| 21 | Slc26a2 | 2817 | 0.304 | 0.0964 | No |
| 22 | Farp1 | 2876 | 0.299 | 0.1005 | No |
| 23 | Elovl5 | 2897 | 0.297 | 0.1066 | No |
| 24 | Tiparp | 2980 | 0.293 | 0.1094 | No |
| 25 | Fkbp5 | 3136 | 0.283 | 0.1083 | No |
| 26 | Akap1 | 3228 | 0.278 | 0.1103 | No |
| 27 | Slc1a1 | 3307 | 0.274 | 0.1129 | No |
| 28 | Mapt | 3344 | 0.272 | 0.1175 | No |
| 29 | Gla | 3599 | 0.258 | 0.1109 | No |
| 30 | Wwc1 | 3722 | 0.252 | 0.1107 | No |
| 31 | Jak2 | 3861 | 0.244 | 0.1096 | No |
| 32 | Elovl2 | 3975 | 0.239 | 0.1095 | No |
| 33 | Abca3 | 4349 | 0.218 | 0.0959 | No |
| 34 | Fos | 4872 | 0.191 | 0.0742 | No |
| 35 | Sec14l2 | 4962 | 0.189 | 0.0742 | No |
| 36 | Mindy1 | 5000 | 0.187 | 0.0768 | No |
| 37 | Cbfa2t3 | 5264 | 0.174 | 0.0677 | No |
| 38 | B4galt1 | 5275 | 0.174 | 0.0713 | No |
| 39 | Med13l | 5391 | 0.169 | 0.0695 | No |
| 40 | Dhcr7 | 5476 | 0.164 | 0.0692 | No |
| 41 | Plaat3 | 5491 | 0.163 | 0.0723 | No |
| 42 | Rara | 5509 | 0.162 | 0.0753 | No |
| 43 | Slc16a1 | 5545 | 0.161 | 0.0774 | No |
| 44 | Slc22a5 | 5582 | 0.160 | 0.0794 | No |
| 45 | Fdft1 | 5902 | 0.145 | 0.0668 | No |
| 46 | Elf1 | 5991 | 0.141 | 0.0657 | No |
| 47 | Slc7a5 | 6026 | 0.139 | 0.0673 | No |
| 48 | Snx24 | 6131 | 0.135 | 0.0652 | No |
| 49 | Adcy9 | 6144 | 0.134 | 0.0678 | No |
| 50 | Tgif2 | 6149 | 0.134 | 0.0708 | No |
| 51 | Slc37a1 | 6270 | 0.129 | 0.0678 | No |
| 52 | Abhd2 | 6355 | 0.125 | 0.0665 | No |
| 53 | Ttc39a | 6370 | 0.124 | 0.0688 | No |
| 54 | Kazn | 6574 | 0.117 | 0.0614 | No |
| 55 | Rhod | 6828 | 0.108 | 0.0512 | No |
| 56 | Slc7a2 | 7031 | 0.099 | 0.0433 | No |
| 57 | Gfra1 | 7085 | 0.097 | 0.0430 | No |
| 58 | Car12 | 7139 | 0.094 | 0.0425 | No |
| 59 | Gab2 | 7339 | 0.086 | 0.0346 | No |
| 60 | Slc19a2 | 7394 | 0.084 | 0.0338 | No |
| 61 | Fasn | 7472 | 0.080 | 0.0319 | No |
| 62 | P2ry2 | 7502 | 0.078 | 0.0323 | No |
| 63 | Slc1a4 | 7706 | 0.069 | 0.0237 | No |
| 64 | Aldh3b1 | 7754 | 0.068 | 0.0229 | No |
| 65 | Clic3 | 7767 | 0.068 | 0.0239 | No |
| 66 | Zfp185 | 7951 | 0.059 | 0.0161 | No |
| 67 | Abat | 7976 | 0.058 | 0.0163 | No |
| 68 | Sema3b | 8059 | 0.055 | 0.0135 | No |
| 69 | Mreg | 8173 | 0.050 | 0.0090 | No |
| 70 | Tmem164 | 8331 | 0.042 | 0.0021 | No |
| 71 | Sybu | 8579 | 0.032 | -0.0096 | No |
| 72 | Ptges | 8583 | 0.032 | -0.0090 | No |
| 73 | Endod1 | 8605 | 0.031 | -0.0093 | No |
| 74 | Anxa9 | 8715 | 0.025 | -0.0142 | No |
| 75 | Tiam1 | 8823 | 0.020 | -0.0191 | No |
| 76 | Tjp3 | 8830 | 0.020 | -0.0189 | No |
| 77 | Inpp5f | 8869 | 0.018 | -0.0204 | No |
| 78 | Rab31 | 8876 | 0.018 | -0.0203 | No |
| 79 | Papss2 | 9236 | 0.002 | -0.0383 | No |
| 80 | Mpped2 | 9389 | -0.003 | -0.0459 | No |
| 81 | Rab17 | 9428 | -0.004 | -0.0477 | No |
| 82 | Aff1 | 9437 | -0.005 | -0.0480 | No |
| 83 | Sfn | 9523 | -0.009 | -0.0520 | No |
| 84 | Scarb1 | 9656 | -0.015 | -0.0583 | No |
| 85 | Cyp26b1 | 9713 | -0.018 | -0.0607 | No |
| 86 | Svil | 9781 | -0.020 | -0.0636 | No |
| 87 | Flnb | 9938 | -0.025 | -0.0709 | No |
| 88 | Bag1 | 10161 | -0.036 | -0.0812 | No |
| 89 | Itpk1 | 10222 | -0.038 | -0.0833 | No |
| 90 | Klf10 | 10375 | -0.045 | -0.0899 | No |
| 91 | Greb1 | 10474 | -0.049 | -0.0937 | No |
| 92 | Rbbp8 | 10478 | -0.049 | -0.0927 | No |
| 93 | Opn3 | 10525 | -0.051 | -0.0938 | No |
| 94 | Tmprss3 | 10572 | -0.053 | -0.0948 | No |
| 95 | Pmaip1 | 10901 | -0.067 | -0.1098 | No |
| 96 | Olfm1 | 11063 | -0.071 | -0.1162 | No |
| 97 | Ugcg | 11183 | -0.076 | -0.1203 | No |
| 98 | Pgr | 11256 | -0.079 | -0.1221 | No |
| 99 | Slc39a6 | 11346 | -0.083 | -0.1246 | No |
| 100 | Cant1 | 11349 | -0.083 | -0.1227 | No |
| 101 | Stc2 | 11462 | -0.088 | -0.1263 | No |
| 102 | Celsr1 | 11619 | -0.095 | -0.1319 | No |
| 103 | Fhl2 | 11747 | -0.100 | -0.1359 | No |
| 104 | Igfbp4 | 12084 | -0.116 | -0.1500 | No |
| 105 | Dlc1 | 12331 | -0.125 | -0.1595 | No |
| 106 | Nav2 | 12385 | -0.128 | -0.1591 | No |
| 107 | Wfs1 | 12500 | -0.134 | -0.1616 | No |
| 108 | Blvrb | 12615 | -0.139 | -0.1641 | No |
| 109 | Igf1r | 12666 | -0.142 | -0.1632 | No |
| 110 | Chpt1 | 12679 | -0.143 | -0.1604 | No |
| 111 | Add3 | 12911 | -0.153 | -0.1684 | No |
| 112 | Slc2a1 | 13459 | -0.178 | -0.1917 | No |
| 113 | Ncor2 | 13472 | -0.178 | -0.1881 | No |
| 114 | Tpd52l1 | 13897 | -0.197 | -0.2048 | No |
| 115 | Rps6ka2 | 13964 | -0.200 | -0.2033 | No |
| 116 | Kcnk5 | 13965 | -0.200 | -0.1986 | No |
| 117 | Bcl11b | 14125 | -0.208 | -0.2017 | No |
| 118 | Scnn1a | 14633 | -0.234 | -0.2216 | No |
| 119 | Rasgrp1 | 14806 | -0.244 | -0.2245 | No |
| 120 | Cd44 | 14858 | -0.246 | -0.2212 | No |
| 121 | Pex11a | 15091 | -0.257 | -0.2268 | No |
| 122 | Mybl1 | 15295 | -0.266 | -0.2307 | No |
| 123 | Lrig1 | 15427 | -0.273 | -0.2308 | No |
| 124 | Tbc1d30 | 15433 | -0.273 | -0.2246 | No |
| 125 | Myb | 15460 | -0.275 | -0.2194 | No |
| 126 | Slc27a2 | 15906 | -0.301 | -0.2346 | No |
| 127 | Cish | 16122 | -0.314 | -0.2380 | Yes |
| 128 | Kdm4b | 16260 | -0.320 | -0.2373 | Yes |
| 129 | Calb2 | 16330 | -0.324 | -0.2331 | Yes |
| 130 | Dynlt3 | 16495 | -0.332 | -0.2334 | Yes |
| 131 | Retreg1 | 16529 | -0.334 | -0.2272 | Yes |
| 132 | Tgm2 | 16879 | -0.357 | -0.2363 | Yes |
| 133 | Nxt1 | 16908 | -0.358 | -0.2292 | Yes |
| 134 | Nadsyn1 | 17035 | -0.366 | -0.2268 | Yes |
| 135 | Siah2 | 17187 | -0.377 | -0.2255 | Yes |
| 136 | Myc | 17216 | -0.379 | -0.2179 | Yes |
| 137 | Ar | 17295 | -0.384 | -0.2127 | Yes |
| 138 | Rapgefl1 | 17486 | -0.398 | -0.2128 | Yes |
| 139 | Thsd4 | 17814 | -0.427 | -0.2191 | Yes |
| 140 | Il17rb | 17852 | -0.430 | -0.2108 | Yes |
| 141 | Deptor | 18218 | -0.463 | -0.2182 | Yes |
| 142 | Rhobtb3 | 18237 | -0.465 | -0.2081 | Yes |
| 143 | Mlph | 18317 | -0.473 | -0.2008 | Yes |
| 144 | Tob1 | 18354 | -0.477 | -0.1913 | Yes |
| 145 | Slc24a3 | 18486 | -0.491 | -0.1862 | Yes |
| 146 | Pdzk1 | 18634 | -0.508 | -0.1816 | Yes |
| 147 | Sh3bp5 | 18647 | -0.509 | -0.1701 | Yes |
| 148 | Sult2b1 | 18838 | -0.538 | -0.1669 | Yes |
| 149 | Mast4 | 18881 | -0.542 | -0.1562 | Yes |
| 150 | Olfml3 | 19156 | -0.588 | -0.1560 | Yes |
| 151 | Bcl2 | 19197 | -0.596 | -0.1439 | Yes |
| 152 | Krt8 | 19260 | -0.609 | -0.1325 | Yes |
| 153 | Ablim1 | 19490 | -0.668 | -0.1282 | Yes |
| 154 | Nrip1 | 19594 | -0.702 | -0.1168 | Yes |
| 155 | Krt18 | 19612 | -0.710 | -0.1007 | Yes |
| 156 | Ppif | 19721 | -0.755 | -0.0883 | Yes |
| 157 | Celsr2 | 19924 | -0.925 | -0.0765 | Yes |
| 158 | Ccnd1 | 19976 | -1.022 | -0.0548 | Yes |
| 159 | Syngr1 | 19990 | -1.096 | -0.0294 | Yes |
| 160 | Reep1 | 20015 | -1.315 | 0.0006 | Yes |

