Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.19588311
Normalized Enrichment Score (NES)	0.87299323
Nominal p-value	0.81409
FDR q-value	0.8904537
FWER p-Value	0.998

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Adam12	25	0.917	0.0240	Yes
2	Spp1	101	0.754	0.0410	Yes
3	Tfpi2	127	0.715	0.0595	Yes
4	Fap	213	0.658	0.0733	Yes
5	Tpm4	514	0.556	0.0735	Yes
6	Anpep	736	0.504	0.0763	Yes
7	Spock1	849	0.487	0.0841	Yes
8	Copa	910	0.478	0.0942	Yes
9	Cap2	935	0.474	0.1061	Yes
10	Calu	1005	0.464	0.1154	Yes
11	Fgf2	1151	0.446	0.1204	Yes
12	Lrp1	1178	0.443	0.1313	Yes
13	Thbs2	1228	0.436	0.1409	Yes
14	Itgb1	1283	0.429	0.1500	Yes
15	Col4a1	1678	0.392	0.1410	Yes
16	Sfrp4	1815	0.380	0.1446	Yes
17	Dpysl3	1817	0.379	0.1550	Yes
18	P3h1	1884	0.374	0.1620	Yes
19	Sat1	2051	0.361	0.1636	Yes
20	Gadd45a	2075	0.360	0.1723	Yes
21	Mest	2170	0.351	0.1773	Yes
22	Gja1	2280	0.342	0.1812	Yes
23	Fn1	2735	0.309	0.1669	Yes
24	Nid2	2901	0.297	0.1668	Yes
25	Htra1	2987	0.293	0.1706	Yes
26	Fstl1	3166	0.281	0.1694	Yes
27	Tagln	3334	0.272	0.1685	Yes
28	Col12a1	3403	0.268	0.1725	Yes
29	Thbs1	3431	0.268	0.1785	Yes
30	Cdh6	3505	0.264	0.1821	Yes
31	Inhba	3515	0.263	0.1889	Yes
32	Notch2	3637	0.256	0.1899	Yes
33	Flna	3900	0.242	0.1833	Yes
34	Ntm	4061	0.235	0.1818	Yes
35	Bgn	4134	0.230	0.1845	Yes
36	Comp	4188	0.227	0.1881	Yes
37	Col5a3	4254	0.224	0.1910	Yes
38	Itga2	4279	0.222	0.1959	Yes
39	Col1a1	4599	0.206	0.1855	No
40	Cald1	4664	0.201	0.1878	No
41	Pvr	4811	0.193	0.1858	No
42	Jun	5099	0.182	0.1764	No
43	Itga5	5107	0.182	0.1811	No
44	Plod1	5278	0.173	0.1773	No
45	Tnc	5282	0.173	0.1819	No
46	Col5a1	5405	0.168	0.1804	No
47	Itgb3	5440	0.166	0.1833	No
48	Vcam1	5743	0.152	0.1723	No
49	Rhob	6013	0.140	0.1626	No
50	Itgav	6079	0.137	0.1631	No
51	Sdc1	6637	0.115	0.1383	No
52	Ppib	6693	0.112	0.1386	No
53	Sgcb	7014	0.100	0.1253	No
54	Vim	7113	0.095	0.1229	No
55	Fbn1	7165	0.092	0.1229	No
56	Mmp14	7292	0.089	0.1190	No
57	Nt5e	7538	0.077	0.1088	No
58	Vegfa	7594	0.074	0.1081	No
59	Plod3	7632	0.073	0.1082	No
60	Col5a2	7722	0.069	0.1057	No
61	Dab2	7868	0.063	0.1001	No
62	Wipf1	7874	0.063	0.1016	No
63	Dst	8502	0.036	0.0710	No
64	Mylk	8878	0.018	0.0527	No
65	Fbln2	9023	0.012	0.0458	No
66	Basp1	9033	0.011	0.0456	No
67	Pcolce2	9669	-0.015	0.0141	No
68	Plaur	9953	-0.026	0.0006	No
69	Magee1	9962	-0.026	0.0009	No
70	Mcm7	9998	-0.028	-0.0001	No
71	Col4a2	10051	-0.031	-0.0019	No
72	Qsox1	10057	-0.031	-0.0012	No
73	Gm21451	10061	-0.031	-0.0005	No
74	Fbn2	10319	-0.043	-0.0123	No
75	Matn2	10470	-0.049	-0.0185	No
76	Tnfrsf12a	10602	-0.054	-0.0236	No
77	Cdh2	10817	-0.063	-0.0326	No
78	Col1a2	11031	-0.071	-0.0413	No
79	Bmp1	11074	-0.072	-0.0415	No
80	Id2	11101	-0.073	-0.0408	No
81	Lgals1	11105	-0.073	-0.0389	No
82	Itgb5	11202	-0.077	-0.0416	No
83	Col7a1	11375	-0.084	-0.0479	No
84	Pdgfrb	11401	-0.086	-0.0468	No
85	Colgalt1	11590	-0.093	-0.0537	No
86	Fstl3	11607	-0.094	-0.0519	No
87	Gadd45b	11789	-0.102	-0.0582	No
88	Slc6a8	11831	-0.104	-0.0574	No
89	Tpm1	11929	-0.109	-0.0593	No
90	Ecm2	12064	-0.115	-0.0629	No
91	Igfbp4	12084	-0.116	-0.0606	No
92	Fuca1	12428	-0.130	-0.0743	No
93	Tgfbi	12481	-0.133	-0.0732	No
94	Edil3	12673	-0.143	-0.0789	No
95	Cadm1	12690	-0.143	-0.0758	No
96	Tgfbr3	12800	-0.148	-0.0772	No
97	Mmp2	12875	-0.151	-0.0767	No
98	Thy1	12915	-0.154	-0.0744	No
99	Dcn	12946	-0.155	-0.0717	No
100	Timp3	13187	-0.165	-0.0792	No
101	Ecm1	13603	-0.184	-0.0950	No
102	Loxl1	13606	-0.184	-0.0900	No
103	Myl9	13608	-0.184	-0.0850	No
104	Col16a1	13758	-0.191	-0.0872	No
105	Lama2	13812	-0.194	-0.0845	No
106	Tgfb1	13944	-0.199	-0.0856	No
107	Pcolce	14733	-0.240	-0.1187	No
108	Cd44	14858	-0.246	-0.1181	No
109	Lama1	14993	-0.252	-0.1179	No
110	Fbln5	15037	-0.254	-0.1131	No
111	Fbln1	15741	-0.291	-0.1404	No
112	Tnfaip3	15746	-0.291	-0.1326	No
113	Emp3	15794	-0.294	-0.1268	No
114	Postn	15800	-0.294	-0.1190	No
115	Lama3	15917	-0.301	-0.1165	No
116	Gpc1	16152	-0.314	-0.1196	No
117	Capg	16286	-0.322	-0.1174	No
118	Cdh11	16570	-0.337	-0.1224	No
119	Abi3bp	16815	-0.353	-0.1249	No
120	Tgm2	16879	-0.357	-0.1183	No
121	Lamc1	16961	-0.361	-0.1124	No
122	Sgcd	17243	-0.380	-0.1161	No
123	Pfn2	17292	-0.384	-0.1079	No
124	Pmepa1	17358	-0.389	-0.1004	No
125	Gem	17395	-0.391	-0.0915	No
126	Tpm2	17513	-0.400	-0.0863	No
127	Plod2	17535	-0.402	-0.0763	No
128	Col11a1	17671	-0.413	-0.0717	No
129	Glipr1	17678	-0.414	-0.0606	No
130	Sntb1	17685	-0.415	-0.0495	No
131	Vcan	17743	-0.420	-0.0408	No
132	Eno2	17864	-0.431	-0.0349	No
133	Pdlim4	17887	-0.433	-0.0241	No
134	Slit2	17909	-0.435	-0.0132	No
135	Sparc	17915	-0.435	-0.0014	No
136	Slit3	18146	-0.456	-0.0004	No
137	Efemp2	18308	-0.473	0.0045	No
138	Vegfc	18980	-0.558	-0.0139	No
139	Fzd8	19157	-0.589	-0.0065	No
140	Serpine2	19164	-0.590	0.0094	No
141	Fas	19210	-0.599	0.0237	No
142	Il15	19338	-0.628	0.0346	No