DatasetGMP.GMP.neu_Pheno.cls
#Group2_versus_Group3.GMP.neu_Pheno.cls
#Group2_versus_Group3_repos
PhenotypeGMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class1
GeneSetHALLMARK_E2F_TARGETS
Enrichment Score (ES)0.38024002
Normalized Enrichment Score (NES)1.6047722
Nominal p-value0.06485356
FDR q-value0.080741346
FWER p-Value0.253
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_E2F_TARGETS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Ccne1230.9260.0181Yes
2Srsf1450.8580.0348Yes
3Dck1670.6820.0429Yes
4Ccp1101770.6750.0564Yes
5Zw101880.6720.0699Yes
6Dnmt12160.6570.0821Yes
7Racgap14240.5790.0837Yes
8Bub1b4540.5720.0941Yes
9Cdca85640.5420.0999Yes
10Cenpe6010.5320.1091Yes
11Cks26220.5260.1190Yes
12Rrm26230.5260.1299Yes
13Ipo76320.5240.1404Yes
14Xpo18880.4820.1376Yes
15Jpt18980.4790.1471Yes
16Lbr9190.4770.1559Yes
17Cdkn1b9510.4720.1642Yes
18Tfrc9530.4720.1739Yes
19Hmmr10110.4630.1807Yes
20Ddx39a10310.4610.1893Yes
21Ran10860.4530.1960Yes
22Hells11940.4410.1997Yes
23Plk412080.4390.2082Yes
24Nolc112860.4290.2132Yes
25Rad2113060.4260.2211Yes
26Lsm813080.4260.2299Yes
27Smc314310.4130.2323Yes
28Kif414530.4110.2398Yes
29Syncrip15540.4020.2431Yes
30Anp32e16220.3960.2479Yes
31Mki6717790.3830.2480Yes
32Cbx519530.3700.2469Yes
33Mcm220080.3660.2518Yes
34Cit21110.3570.2541Yes
35Rad51ap121440.3530.2598Yes
36Top2a22520.3450.2615Yes
37Mcm323330.3390.2645Yes
38Hmgb223360.3390.2715Yes
39Lmnb123410.3380.2783Yes
40Lyar23520.3380.2848Yes
41Nasp25310.3220.2825Yes
42Ak225360.3220.2890Yes
43Cdc25a25420.3210.2954Yes
44Phf5a26090.3170.2987Yes
45Cse1l27770.3060.2966Yes
46Ppp1r829130.2960.2959Yes
47Tbrg429200.2960.3018Yes
48Atad229330.2950.3073Yes
49Cdkn2c29670.2940.3117Yes
50Mre11a29770.2930.3174Yes
51Hnrnpd30380.2900.3204Yes
52Pcna31310.2840.3216Yes
53Usp131500.2820.3265Yes
54Birc531730.2810.3313Yes
55Nup10731750.2810.3370Yes
56Nup20532200.2790.3406Yes
57Pnn33250.2730.3410Yes
58Brca133380.2720.3461Yes
59Nudt2133610.2710.3506Yes
60Mcm436080.2580.3435Yes
61Ssrp136200.2570.3483Yes
62Aurka36480.2560.3523Yes
63Smc1a37740.2480.3511Yes
64Gspt137940.2470.3553Yes
65Ung38530.2440.3574Yes
66Pttg140240.2360.3538Yes
67Tra2b40680.2340.3565Yes
68Ube2s41360.2300.3579Yes
69Spc2541500.2290.3620Yes
70Prkdc41680.2280.3658Yes
71Kif2241930.2270.3693Yes
72Ncapd242000.2260.3737Yes
73Mcm542490.2240.3760Yes
74Eif2s142570.2240.3802Yes
75Dut44380.2140.3756No
76Gins146400.2030.3697No
77Plk151520.1800.3476No
78Cdk152280.1760.3475No
79Tk154690.1640.3388No
80Cdkn1a55530.1610.3380No
81H2az155580.1610.3411No
82Ilf356110.1580.3418No
83Stag156540.1560.3429No
84Shmt157080.1530.3434No
85Nup15357600.1510.3440No
86Psip157800.1500.3461No
87Mybl258160.1490.3474No
88Pold359700.1420.3427No
89Chek260290.1390.3426No
90Kif2c60600.1370.3440No
91Gins361330.1340.3431No
92Nap1l162620.1290.3394No
93Tmpo63740.1240.3363No
94Pa2g463830.1240.3385No
95Nbn64590.1210.3372No
96Pop765260.1200.3364No
97Rpa165670.1170.3368No
98E2f865700.1170.3391No
99Bard165730.1170.3415No
100Tacc366190.1150.3416No
101Rbbp766360.1150.3432No
102Xrcc666820.1130.3433No
103Mcm667090.1120.3443No
104Psmc3ip67990.1090.3420No
105Lig168130.1080.3436No
106Chek168650.1060.3433No
107Slbp70280.0990.3372No
108Dlgap571040.0950.3354No
109Donson72680.0890.3290No
110Suv39h173000.0880.3293No
111Rfc174350.0820.3242No
112Nop5674470.0810.3253No
113Smc674970.0790.3245No
114Ubr777500.0680.3132No
115Espl180180.0570.3009No
116Exosc881490.0510.2954No
117Wee182420.0470.2918No
118Eed83080.0430.2894No
119Mthfd285740.0320.2767No
120Aurkb86500.0280.2735No
121Cks1b86600.0280.2736No
122Rad5086830.0270.2731No
123Trip1386960.0260.2730No
124Tubb590400.0110.2559No
125Rpa290660.0100.2549No
126Msh292130.0030.2476No
127Melk92370.0020.2465No
128Cdca392650.0010.2451No
129Smc49397-0.0030.2386No
130Mxd39477-0.0070.2347No
131Dek9495-0.0080.2340No
132Ctcf9665-0.0150.2258No
133Paics9749-0.0190.2220No
134Pms29811-0.0210.2194No
135Mlh19958-0.0260.2126No
136Mcm79998-0.0280.2112No
137Prps110269-0.0410.1984No
138Pan210279-0.0410.1988No
139Srsf210410-0.0470.1932No
140Prim210436-0.0470.1930No
141Mms22l10498-0.0500.1909No
142Cdc25b10686-0.0570.1827No
143Nme110710-0.0580.1827No
144Hmgb310857-0.0640.1767No
145Ranbp110964-0.0690.1728No
146Pds5b11026-0.0710.1712No
147Ccnb211121-0.0740.1680No
148Hus111218-0.0780.1648No
149Brca211313-0.0820.1617No
150Orc211437-0.0870.1573No
151Spag511497-0.0900.1562No
152Dctpp111523-0.0900.1568No
153Cnot911602-0.0940.1548No
154Ezh212048-0.1140.1348No
155Rad51c12061-0.1150.1366No
156Luc7l312072-0.1160.1384No
157Prdx412102-0.1170.1394No
158Brms1l12139-0.1180.1401No
159Pola212311-0.1240.1340No
160Diaph312315-0.1240.1364No
161Depdc1a12470-0.1320.1314No
162Tipin12851-0.1500.1154No
163Cdc2012882-0.1520.1170No
164Orc612973-0.1560.1157No
165Hmga1b13194-0.1650.1080No
166Pole13251-0.1670.1087No
167Ube2t13356-0.1730.1070No
168Rfc313390-0.1740.1090No
169Dclre1b13471-0.1780.1086No
170Snrpb13524-0.1810.1098No
171Mad2l113956-0.2000.0922No
172Timeless14365-0.2220.0762No
173Gins414634-0.2340.0675No
174Pold214647-0.2350.0718No
175Pold114653-0.2350.0765No
176Kif18b15220-0.2620.0534No
177Ppm1d15315-0.2670.0542No
178Trp5315601-0.2830.0457No
179Wdr9015611-0.2840.0511No
180H2ax15768-0.2930.0493No
181Pole415888-0.3000.0495No
182Tubg116085-0.3120.0461No
183Tcf1916106-0.3130.0516No
184Rpa316302-0.3230.0485No
185Cdk416515-0.3330.0447No
186Asf1a17119-0.3710.0220No
187Myc17216-0.3790.0250No
188Asf1b17397-0.3910.0241No
189Spc2418344-0.476-0.0138No
190Rad118439-0.487-0.0084No
191Cdkn318595-0.503-0.0058No
192Rfc218770-0.527-0.0036No
193Ing319039-0.567-0.0054No
194Dscc119161-0.5890.0008No
195Rnaseh2a19198-0.5960.0113No
196Stmn119564-0.6870.0072No
197Cenpm19744-0.7740.0142No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_E2F_TARGETS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_E2F_TARGETS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_E2F_TARGETS