Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_COMPLEMENT
Enrichment Score (ES)	-0.19092351
Normalized Enrichment Score (NES)	-0.95083255
Nominal p-value	0.5920792
FDR q-value	0.7930408
FWER p-Value	0.99

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Hspa1a	78	0.789	0.0134	No
2	Pim1	110	0.739	0.0280	No
3	Tfpi2	127	0.715	0.0429	No
4	Pcsk9	205	0.664	0.0535	No
5	Clu	284	0.628	0.0634	No
6	Hspa5	395	0.586	0.0707	No
7	Kcnip2	555	0.545	0.0746	No
8	F8	705	0.510	0.0783	No
9	Pik3r5	782	0.495	0.0853	No
10	Lap3	795	0.493	0.0955	No
11	Maff	968	0.469	0.0972	No
12	Plscr1	1119	0.448	0.0995	No
13	S100a9	1157	0.445	0.1074	No
14	Lrp1	1178	0.443	0.1161	No
15	Rce1	1247	0.434	0.1221	No
16	S100a13	1384	0.417	0.1244	No
17	Usp14	1413	0.414	0.1321	No
18	Sirt6	1443	0.412	0.1397	No
19	Dock9	1570	0.401	0.1421	No
20	Cr2	1756	0.385	0.1413	No
21	Sh2b3	2185	0.351	0.1274	No
22	Dusp5	2288	0.342	0.1298	No
23	Ctsd	2616	0.317	0.1202	No
24	Fn1	2735	0.309	0.1211	No
25	Prdm4	2775	0.306	0.1258	No
26	Ppp2cb	2798	0.305	0.1314	No
27	Vcpip1	2841	0.302	0.1359	No
28	Gp9	2927	0.296	0.1381	No
29	Prep	2974	0.294	0.1422	No
30	Casp1	3043	0.290	0.1452	No
31	Lck	3196	0.280	0.1436	No
32	Pdgfb	3201	0.279	0.1496	No
33	Cebpb	3300	0.274	0.1506	No
34	Pik3ca	3321	0.273	0.1556	No
35	Plg	3384	0.270	0.1584	No
36	Pclo	3687	0.254	0.1488	No
37	Me1	3721	0.252	0.1526	No
38	Jak2	3861	0.244	0.1510	No
39	Lamp2	3869	0.244	0.1560	No
40	Ltf	3978	0.239	0.1558	No
41	Kif2a	4019	0.237	0.1589	No
42	Usp16	4211	0.226	0.1543	No
43	Gca	4221	0.225	0.1588	No
44	Pla2g7	4243	0.224	0.1626	No
45	Cd36	4329	0.219	0.1631	No
46	Dyrk2	4358	0.218	0.1665	No
47	C2	4611	0.206	0.1583	No
48	Calm1	4715	0.198	0.1575	No
49	Was	4736	0.197	0.1608	No
50	F7	4807	0.194	0.1615	No
51	Grb2	4862	0.191	0.1630	No
52	Gmfb	4869	0.191	0.1669	No
53	Rbsn	4969	0.189	0.1660	No
54	Itgam	5146	0.180	0.1611	No
55	Lgmn	5160	0.179	0.1644	No
56	Ppp4c	5246	0.175	0.1639	No
57	Klkb1	5366	0.170	0.1617	No
58	Gp1ba	5387	0.169	0.1644	No
59	Cblb	5850	0.147	0.1444	No
60	Gpd2	5980	0.141	0.1410	No
61	Notch4	6055	0.138	0.1403	No
62	C3	6129	0.135	0.1395	No
63	Calm3	6209	0.131	0.1384	No
64	Phex	6255	0.130	0.1390	No
65	Irf1	6321	0.127	0.1385	No
66	Serpinc1	6329	0.126	0.1410	No
67	Gngt2	6343	0.126	0.1431	No
68	Lyn	6367	0.125	0.1446	No
69	Spock2	6774	0.110	0.1266	No
70	Usp8	7124	0.095	0.1111	No
71	Pla2g4a	7278	0.089	0.1054	No
72	Mmp14	7292	0.089	0.1067	No
73	Gnai2	7379	0.085	0.1042	No
74	Cdk5r1	7393	0.084	0.1054	No
75	Gnai3	7403	0.084	0.1068	No
76	Adam9	7875	0.062	0.0844	No
77	Raf1	7982	0.058	0.0804	No
78	Ctss	8354	0.042	0.0626	No
79	Xpnpep1	8363	0.041	0.0631	No
80	Irf2	8649	0.029	0.0494	No
81	Ctsb	8834	0.020	0.0406	No
82	Fcnb	8952	0.015	0.0350	No
83	Ctsl	8981	0.013	0.0339	No
84	Fcer1g	9081	0.009	0.0291	No
85	Prkcd	9100	0.008	0.0284	No
86	F10	9342	-0.001	0.0163	No
87	Ctso	9369	-0.002	0.0150	No
88	Psen1	9413	-0.004	0.0129	No
89	Anxa5	9469	-0.006	0.0103	No
90	Cdh13	9750	-0.019	-0.0034	No
91	Plaur	9953	-0.026	-0.0130	No
92	Col4a2	10051	-0.031	-0.0172	No
93	Usp15	10171	-0.036	-0.0224	No
94	Rabif	10265	-0.040	-0.0262	No
95	Irf7	10483	-0.049	-0.0361	No
96	Casp9	11475	-0.089	-0.0840	No
97	Plek	11530	-0.091	-0.0847	No
98	C1qc	11667	-0.097	-0.0894	No
99	Akap10	11770	-0.101	-0.0923	No
100	Casp4	11914	-0.108	-0.0972	No
101	Lgals3	12123	-0.118	-0.1051	No
102	Gng2	12232	-0.121	-0.1078	No
103	Lta4h	12330	-0.125	-0.1100	No
104	Apoc1	12468	-0.132	-0.1140	No
105	Rnf4	12660	-0.142	-0.1205	No
106	Lcp2	13615	-0.185	-0.1645	No
107	Dock10	13674	-0.188	-0.1633	No
108	Atox1	13811	-0.194	-0.1659	No
109	Dock4	13902	-0.197	-0.1661	No
110	Stx4a	14051	-0.205	-0.1690	No
111	Ang	14144	-0.209	-0.1691	No
112	Dusp6	14147	-0.209	-0.1646	No
113	Gata3	14316	-0.220	-0.1682	No
114	Lipa	14383	-0.223	-0.1667	No
115	Zeb1	14736	-0.240	-0.1791	No
116	Rasgrp1	14806	-0.244	-0.1772	No
117	Cp	14848	-0.246	-0.1739	No
118	Pik3cg	14994	-0.252	-0.1757	No
119	Pfn1	15004	-0.252	-0.1706	No
120	Prcp	15144	-0.258	-0.1719	No
121	Scg3	15178	-0.260	-0.1679	No
122	Ctsc	15313	-0.267	-0.1688	No
123	Csrp1	15372	-0.271	-0.1658	No
124	Cfh	15571	-0.282	-0.1696	No
125	Msrb1	15612	-0.284	-0.1653	No
126	Rhog	15668	-0.287	-0.1618	No
127	Tnfaip3	15746	-0.291	-0.1593	No
128	F5	15795	-0.294	-0.1553	No
129	Brpf3	16319	-0.324	-0.1745	No
130	Kynu	16521	-0.334	-0.1773	No
131	Psmb9	16779	-0.350	-0.1826	Yes
132	Src	16827	-0.354	-0.1772	Yes
133	Dgkg	16974	-0.362	-0.1766	Yes
134	Gnb2	16987	-0.363	-0.1693	Yes
135	Cda	17021	-0.365	-0.1629	Yes
136	Casp7	17274	-0.382	-0.1672	Yes
137	Car2	17746	-0.420	-0.1817	Yes
138	Fdx1	17805	-0.426	-0.1753	Yes
139	L3mbtl4	17820	-0.427	-0.1666	Yes
140	Cpm	17894	-0.433	-0.1608	Yes
141	Ctsh	17979	-0.441	-0.1554	Yes
142	Prss36	18009	-0.444	-0.1471	Yes
143	Gnb4	18040	-0.447	-0.1388	Yes
144	Cpq	18150	-0.456	-0.1343	Yes
145	Hnf4a	18316	-0.473	-0.1322	Yes
146	Cfb	18424	-0.485	-0.1269	Yes
147	Casp3	18480	-0.491	-0.1190	Yes
148	Fyn	18614	-0.506	-0.1146	Yes
149	F3	18696	-0.516	-0.1073	Yes
150	Olr1	18851	-0.539	-0.1033	Yes
151	Serpinb2	19349	-0.631	-0.1144	Yes
152	Kcnip3	19356	-0.633	-0.1009	Yes
153	Pdp1	19371	-0.636	-0.0876	Yes
154	Ehd1	19393	-0.642	-0.0746	Yes
155	Zfpm2	19421	-0.647	-0.0618	Yes
156	Actn2	19486	-0.666	-0.0504	Yes
157	Timp2	19520	-0.675	-0.0373	Yes
158	Cd46	19814	-0.823	-0.0340	Yes
159	Dpp4	19828	-0.830	-0.0164	Yes
160	Dgkh	20006	-1.202	0.0010	Yes