Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.21614204
Normalized Enrichment Score (NES)	-1.0036745
Nominal p-value	0.4681648
FDR q-value	0.87112474
FWER p-Value	0.986

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Clu	284	0.628	0.0038	No
2	Ifitm3	315	0.612	0.0199	No
3	Lef1	347	0.601	0.0357	No
4	Mcl1	495	0.562	0.0445	No
5	Ctnnb1	558	0.544	0.0570	No
6	Dnajc3	610	0.530	0.0697	No
7	Bik	912	0.477	0.0683	No
8	Cdkn1b	951	0.472	0.0800	No
9	Sptan1	990	0.466	0.0915	No
10	App	1082	0.454	0.1000	No
11	Hmox1	1457	0.411	0.0930	No
12	Bcap31	1552	0.402	0.0998	No
13	Cth	1790	0.382	0.0989	No
14	Sat1	2051	0.361	0.0962	No
15	Gadd45a	2075	0.360	0.1054	No
16	Top2a	2252	0.345	0.1065	No
17	Hmgb2	2336	0.339	0.1121	No
18	Cd38	2433	0.330	0.1168	No
19	Ppp3r1	2532	0.322	0.1211	No
20	Slc20a1	2558	0.321	0.1291	No
21	Dnaja1	2634	0.315	0.1344	No
22	Igf2r	2753	0.308	0.1373	No
23	Etf1	2809	0.304	0.1433	No
24	Casp1	3043	0.290	0.1399	No
25	Rhot2	3225	0.278	0.1388	No
26	Anxa1	3306	0.274	0.1427	No
27	Brca1	3338	0.272	0.1490	No
28	Casp2	3414	0.268	0.1529	No
29	Rnasel	3756	0.249	0.1430	No
30	Bgn	4134	0.230	0.1306	No
31	Nefh	4684	0.201	0.1088	No
32	Retsat	4843	0.192	0.1064	No
33	Jun	5099	0.182	0.0988	No
34	Tspo	5336	0.172	0.0919	No
35	Sqstm1	5411	0.168	0.0930	No
36	Cd69	5432	0.167	0.0968	No
37	Rara	5509	0.162	0.0976	No
38	Bcl10	5538	0.162	0.1009	No
39	Cdkn1a	5553	0.161	0.1048	No
40	Sod1	5950	0.143	0.0890	No
41	Rhob	6013	0.140	0.0899	No
42	Gna15	6112	0.135	0.0889	No
43	Irf1	6321	0.127	0.0821	No
44	Dffa	6657	0.114	0.0685	No
45	H1f0	6741	0.110	0.0675	No
46	Cdk2	6778	0.110	0.0689	No
47	Fdxr	7084	0.097	0.0563	No
48	Sod2	7138	0.094	0.0564	No
49	Isg20	7443	0.081	0.0434	No
50	Birc3	7646	0.072	0.0353	No
51	Xiap	7895	0.061	0.0246	No
52	Bmf	7942	0.059	0.0240	No
53	Btg3	8122	0.052	0.0165	No
54	Gpx1	8156	0.051	0.0163	No
55	Wee1	8242	0.047	0.0134	No
56	Aifm3	8276	0.045	0.0130	No
57	Dap3	8410	0.040	0.0075	No
58	Add1	8484	0.037	0.0049	No
59	Pak1	8509	0.036	0.0047	No
60	Atf3	8529	0.035	0.0047	No
61	Ppt1	8779	0.023	-0.0071	No
62	Cflar	8988	0.013	-0.0172	No
63	Gsr	9190	0.004	-0.0272	No
64	Rock1	9373	-0.002	-0.0363	No
65	Psen1	9413	-0.004	-0.0382	No
66	Gpx4	9489	-0.007	-0.0417	No
67	Cyld	9628	-0.014	-0.0483	No
68	Pea15a	9736	-0.019	-0.0531	No
69	Lmna	9820	-0.022	-0.0566	No
70	Smad7	9931	-0.025	-0.0615	No
71	Dnm1l	10053	-0.031	-0.0667	No
72	Gsn	10186	-0.037	-0.0722	No
73	Crebbp	10352	-0.044	-0.0793	No
74	Tnfrsf12a	10602	-0.054	-0.0902	No
75	Cdc25b	10686	-0.057	-0.0927	No
76	Tap1	10753	-0.060	-0.0943	No
77	Pmaip1	10901	-0.067	-0.0998	No
78	Ppp2r5b	11123	-0.074	-0.1088	No
79	Dap	11152	-0.075	-0.1080	No
80	Tnf	11302	-0.081	-0.1132	No
81	Btg2	11381	-0.085	-0.1147	No
82	Pdgfrb	11401	-0.086	-0.1132	No
83	Casp9	11475	-0.089	-0.1143	No
84	Dpyd	11589	-0.093	-0.1173	No
85	Madd	11606	-0.094	-0.1154	No
86	Gadd45b	11789	-0.102	-0.1216	No
87	Casp4	11914	-0.108	-0.1247	No
88	Vdac2	11919	-0.108	-0.1218	No
89	Lgals3	12123	-0.118	-0.1286	No
90	Plcb2	12214	-0.120	-0.1297	No
91	Hgf	12380	-0.128	-0.1343	No
92	Bcl2l2	12409	-0.129	-0.1320	No
93	Cd14	12437	-0.130	-0.1296	No
94	Bcl2l11	12711	-0.144	-0.1392	No
95	Tgfbr3	12800	-0.148	-0.1393	No
96	Mmp2	12875	-0.151	-0.1387	No
97	Dcn	12946	-0.155	-0.1378	No
98	Timp3	13187	-0.165	-0.1451	No
99	Pdcd4	14270	-0.216	-0.1932	No
100	Bax	14403	-0.224	-0.1934	No
101	Gpx3	14693	-0.237	-0.2011	No
102	Nedd9	14716	-0.239	-0.1954	No
103	Erbb3	14739	-0.240	-0.1896	No
104	Gch1	14743	-0.240	-0.1828	No
105	Casp6	14824	-0.245	-0.1798	No
106	Bnip3l	14829	-0.245	-0.1729	No
107	Rela	14836	-0.245	-0.1662	No
108	Cd44	14858	-0.246	-0.1601	No
109	Casp8	14939	-0.250	-0.1569	No
110	Sc5d	15014	-0.253	-0.1534	No
111	Ccnd2	15171	-0.260	-0.1537	No
112	Txnip	15223	-0.262	-0.1488	No
113	Bid	15543	-0.280	-0.1567	No
114	Psen2	15733	-0.291	-0.1579	No
115	Cav1	15866	-0.298	-0.1559	No
116	Ebp	15945	-0.303	-0.1511	No
117	Ifngr1	16526	-0.334	-0.1706	No
118	Gstm2	17059	-0.368	-0.1868	No
119	Casp7	17274	-0.382	-0.1865	No
120	Eno2	17864	-0.431	-0.2037	Yes
121	Satb1	17898	-0.434	-0.1929	Yes
122	Tgfb2	18166	-0.457	-0.1932	Yes
123	Casp3	18480	-0.491	-0.1948	Yes
124	Bcl2l1	18615	-0.506	-0.1869	Yes
125	Tnfsf10	18658	-0.510	-0.1744	Yes
126	Mgmt	18662	-0.511	-0.1598	Yes
127	Ank	18833	-0.537	-0.1529	Yes
128	Ddit3	18849	-0.539	-0.1381	Yes
129	Diablo	19048	-0.569	-0.1317	Yes
130	Fas	19210	-0.599	-0.1226	Yes
131	Timp2	19520	-0.675	-0.1187	Yes
132	Krt18	19612	-0.710	-0.1028	Yes
133	Il18	19697	-0.743	-0.0857	Yes
134	Ier3	19736	-0.767	-0.0655	Yes
135	Ptk2	19794	-0.808	-0.0451	Yes
136	F2r	19935	-0.946	-0.0249	Yes
137	Ccnd1	19976	-1.022	0.0025	Yes