Details for gene set HALLMARK_APICAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group2_versus_Group3.GMP.neu_Pheno.cls #Group2_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APICAL_JUNCTION
Enrichment Score (ES)	-0.22886959
Normalized Enrichment Score (NES)	-1.0400608
Nominal p-value	0.3842795
FDR q-value	0.9066182
FWER p-Value	0.98

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Vcl	298	0.621	0.0005	No
2	Ctnnd1	407	0.583	0.0097	No
3	Actg1	457	0.570	0.0215	No
4	Hras	552	0.546	0.0304	No
5	Itga10	710	0.509	0.0352	No
6	Vwf	848	0.487	0.0405	No
7	Myh9	1177	0.443	0.0351	No
8	Cdh4	1269	0.430	0.0413	No
9	Irs1	1276	0.430	0.0517	No
10	Itgb1	1283	0.429	0.0621	No
11	Epb41l2	1506	0.406	0.0611	No
12	Alox8	1632	0.396	0.0647	No
13	Gtf2f1	1706	0.390	0.0708	No
14	Mpzl1	1993	0.367	0.0656	No
15	Adam15	2071	0.360	0.0707	No
16	Cdh8	2080	0.359	0.0793	No
17	Jam3	2090	0.359	0.0878	No
18	Msn	2592	0.319	0.0706	No
19	Egfr	2687	0.313	0.0736	No
20	Actn1	2707	0.312	0.0805	No
21	Cd86	2870	0.300	0.0798	No
22	Rasa1	2916	0.296	0.0850	No
23	Tsc1	3286	0.275	0.0733	No
24	Gnai1	3383	0.270	0.0752	No
25	Cdh6	3505	0.264	0.0757	No
26	Actn4	3519	0.263	0.0816	No
27	Hadh	3696	0.253	0.0791	No
28	Dhx16	3709	0.253	0.0848	No
29	Cap1	3813	0.246	0.0858	No
30	Jup	3815	0.246	0.0919	No
31	Skap2	3925	0.241	0.0924	No
32	Cdk8	4020	0.237	0.0936	No
33	Ywhah	4055	0.235	0.0978	No
34	Shc1	4130	0.230	0.0998	No
35	Itga2	4279	0.222	0.0979	No
36	Tjp1	4685	0.201	0.0825	No
37	Pten	4756	0.196	0.0839	No
38	Nexn	5169	0.179	0.0676	No
39	B4galt1	5275	0.174	0.0667	No
40	Wasl	5672	0.155	0.0507	No
41	Icam1	5676	0.155	0.0544	No
42	Vcam1	5743	0.152	0.0549	No
43	Tial1	6031	0.139	0.0439	No
44	Arhgef6	6040	0.139	0.0470	No
45	Thbs3	6097	0.136	0.0475	No
46	Mapk13	6215	0.131	0.0449	No
47	Sympk	6447	0.121	0.0363	No
48	Ptprc	6596	0.116	0.0318	No
49	Amh	6789	0.109	0.0249	No
50	Nrap	6843	0.107	0.0249	No
51	Ctnna1	7052	0.098	0.0169	No
52	Taok2	7110	0.095	0.0164	No
53	Fbn1	7165	0.092	0.0160	No
54	Gnai2	7379	0.085	0.0074	No
55	Itgb4	7413	0.083	0.0078	No
56	Nf2	7664	0.071	-0.0030	No
57	Map4k2	7682	0.070	-0.0021	No
58	Kcnh2	7727	0.069	-0.0026	No
59	Sirpa	7777	0.067	-0.0034	No
60	Icam4	7854	0.064	-0.0056	No
61	Adam9	7875	0.062	-0.0051	No
62	Dlg1	8022	0.057	-0.0110	No
63	Cldn15	8062	0.055	-0.0116	No
64	Inppl1	8262	0.045	-0.0205	No
65	Sdc3	8469	0.037	-0.0299	No
66	Parva	8553	0.033	-0.0333	No
67	Actb	8791	0.022	-0.0446	No
68	Nectin1	9071	0.010	-0.0584	No
69	Insig1	9078	0.009	-0.0585	No
70	Nrtn	9577	-0.012	-0.0833	No
71	Cadm2	9630	-0.014	-0.0856	No
72	Pecam1	9693	-0.016	-0.0883	No
73	Map3k20	9790	-0.021	-0.0926	No
74	Icam5	9791	-0.021	-0.0921	No
75	Vasp	9806	-0.021	-0.0922	No
76	Pik3cb	9942	-0.025	-0.0984	No
77	Cadm3	10069	-0.032	-0.1040	No
78	Exoc4	10148	-0.035	-0.1070	No
79	Akt2	10299	-0.042	-0.1135	No
80	Nrxn2	10305	-0.042	-0.1127	No
81	Ldlrap1	10339	-0.044	-0.1133	No
82	Pard6g	10588	-0.053	-0.1244	No
83	Vav2	10589	-0.054	-0.1231	No
84	Cnn2	10641	-0.055	-0.1243	No
85	Ikbkg	10663	-0.056	-0.1239	No
86	Mapk14	10785	-0.061	-0.1285	No
87	Bmp1	11074	-0.072	-0.1412	No
88	Mdk	11268	-0.080	-0.1489	No
89	Itga9	11308	-0.082	-0.1488	No
90	Nlgn3	11319	-0.082	-0.1473	No
91	Myh10	11573	-0.092	-0.1577	No
92	Syk	12034	-0.114	-0.1780	No
93	Nfasc	12160	-0.119	-0.1813	No
94	Sgce	12197	-0.119	-0.1801	No
95	Akt3	12260	-0.122	-0.1802	No
96	Rras	12432	-0.130	-0.1856	No
97	Tgfbi	12481	-0.133	-0.1847	No
98	Amigo2	12532	-0.136	-0.1838	No
99	Arpc2	12621	-0.140	-0.1847	No
100	Plcg1	12698	-0.144	-0.1849	No
101	Mmp2	12875	-0.151	-0.1900	No
102	Thy1	12915	-0.154	-0.1881	No
103	Adra1b	12926	-0.154	-0.1848	No
104	Adam23	13128	-0.162	-0.1908	No
105	Pkd1	13189	-0.165	-0.1897	No
106	Crat	13451	-0.177	-0.1985	No
107	Myl9	13608	-0.184	-0.2017	No
108	Col16a1	13758	-0.191	-0.2044	No
109	Stx4a	14051	-0.205	-0.2140	No
110	Rsu1	14128	-0.208	-0.2126	No
111	Cd34	14249	-0.215	-0.2133	No
112	Zyx	14560	-0.230	-0.2231	Yes
113	Cntn1	14603	-0.232	-0.2194	Yes
114	Adamts5	14727	-0.239	-0.2196	Yes
115	Wnk4	14738	-0.240	-0.2141	Yes
116	Itga3	14757	-0.241	-0.2090	Yes
117	Nectin2	14990	-0.252	-0.2144	Yes
118	Pfn1	15004	-0.252	-0.2087	Yes
119	Traf1	15197	-0.261	-0.2119	Yes
120	Lima1	15274	-0.265	-0.2091	Yes
121	Cldn14	15277	-0.265	-0.2025	Yes
122	Nectin4	15751	-0.292	-0.2190	Yes
123	Lama3	15917	-0.301	-0.2198	Yes
124	Pbx2	16000	-0.306	-0.2163	Yes
125	Tubg1	16085	-0.312	-0.2127	Yes
126	Calb2	16330	-0.324	-0.2169	Yes
127	Negr1	16480	-0.332	-0.2161	Yes
128	Tspan4	16489	-0.332	-0.2082	Yes
129	Cdh11	16570	-0.337	-0.2038	Yes
130	Pals1	16676	-0.343	-0.2005	Yes
131	Sorbs3	16761	-0.348	-0.1960	Yes
132	Src	16827	-0.354	-0.1904	Yes
133	Actn3	16867	-0.356	-0.1835	Yes
134	Lamb3	16909	-0.358	-0.1766	Yes
135	Nf1	17308	-0.385	-0.1870	Yes
136	Pik3r3	17319	-0.386	-0.1779	Yes
137	Rac2	17375	-0.391	-0.1709	Yes
138	Gamt	17482	-0.398	-0.1662	Yes
139	Vcan	17743	-0.420	-0.1688	Yes
140	Cercam	17883	-0.432	-0.1650	Yes
141	Slit2	17909	-0.435	-0.1554	Yes
142	Atp1a3	17947	-0.438	-0.1463	Yes
143	Nectin3	18001	-0.443	-0.1379	Yes
144	Baiap2	18312	-0.473	-0.1417	Yes
145	Layn	18352	-0.477	-0.1317	Yes
146	Col17a1	18474	-0.490	-0.1255	Yes
147	Nlgn2	18484	-0.491	-0.1137	Yes
148	Evl	18491	-0.492	-0.1017	Yes
149	Cdh1	18493	-0.492	-0.0894	Yes
150	Mvd	18784	-0.529	-0.0908	Yes
151	Icam2	18882	-0.543	-0.0821	Yes
152	Rhof	18955	-0.552	-0.0719	Yes
153	Shroom2	19010	-0.562	-0.0606	Yes
154	Cx3cl1	19023	-0.564	-0.0471	Yes
155	Myl12b	19033	-0.566	-0.0334	Yes
156	Cd274	19059	-0.571	-0.0203	Yes
157	Amigo1	19199	-0.596	-0.0124	Yes
158	Actn2	19486	-0.666	-0.0102	Yes
159	Tmem8b	19539	-0.680	0.0042	Yes
160	Ptk2	19794	-0.808	0.0117	Yes