DatasetGMP.GMP.neu_Pheno.cls
#Group1_versus_Group4.GMP.neu_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeGMP.neu_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.29003164
Normalized Enrichment Score (NES)1.2932353
Nominal p-value0.2654321
FDR q-value0.5986748
FWER p-Value0.78
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Sqle1170.8980.0167Yes
2Kpnb15120.6450.0131Yes
3Cdkn2c5140.6450.0293Yes
4Ccna25660.6270.0425Yes
5Srsf19340.5370.0376Yes
6Hnrnpu9800.5270.0486Yes
7Xpo110560.5160.0578Yes
8Nek210580.5160.0708Yes
9Plk114470.4600.0628Yes
10Lig314610.4570.0737Yes
11Incenp14720.4550.0846Yes
12Odc114930.4530.0950Yes
13Lmnb115960.4390.1010Yes
14Ube2c16440.4350.1096Yes
15Rad2118430.4190.1102Yes
16Cdc25b20010.4050.1124Yes
17Hnrnpd20150.4030.1219Yes
18Espl120670.3980.1294Yes
19Cenpf21800.3900.1336Yes
20Upf122130.3880.1417Yes
21Aurkb23160.3790.1461Yes
22Tfdp127430.3420.1333Yes
23Smc1a28940.3360.1342Yes
24Top2a30050.3280.1369Yes
25Ddx39a30110.3270.1449Yes
26Marcks30120.3270.1531Yes
27Syncrip30880.3210.1574Yes
28Numa132020.3100.1596Yes
29Sfpq32060.3100.1672Yes
30Dr132260.3090.1740Yes
31Uck234530.2920.1700Yes
32Cdc2034740.2910.1763Yes
33Mybl235780.2830.1782Yes
34E2f235970.2820.1844Yes
35Ndc8037650.2730.1829Yes
36Kif2337770.2730.1892Yes
37Ccnd137860.2720.1957Yes
38G3bp138210.2700.2008Yes
39Prc138260.2700.2074Yes
40Kif2c39970.2630.2054Yes
41Lbr40770.2580.2080Yes
42Ccnf41150.2550.2125Yes
43Rad23b42450.2480.2123Yes
44Kif1143390.2410.2137Yes
45Mcm543490.2410.2193Yes
46Cdk143500.2410.2253Yes
47Birc544090.2360.2284Yes
48Jpt147790.2230.2154Yes
49E2f447990.2220.2200Yes
50Fancc48130.2210.2249Yes
51Nup9848970.2200.2263Yes
52Hspa849900.2150.2271Yes
53Map3k2050140.2130.2313Yes
54Hmmr50490.2120.2349Yes
55Cdc751400.2060.2356Yes
56Ilf351610.2050.2397Yes
57Hif1a52240.2010.2417Yes
58Cdkn352520.1990.2453Yes
59Bub153170.1960.2471Yes
60Chmp1a54490.1890.2452Yes
61Cul154790.1870.2485Yes
62Chaf1a55180.1850.2512Yes
63Slc12a255410.1840.2547Yes
64Notch256150.1800.2556Yes
65Tacc356450.1780.2586Yes
66Mad2l156570.1770.2625Yes
67Cenpe57440.1730.2626Yes
68Plk457510.1730.2666Yes
69Ctcf57650.1720.2703Yes
70Slc38a158030.1700.2727Yes
71Nup5059130.1650.2714Yes
72Polq59530.1630.2735Yes
73H2bc1259800.1610.2763Yes
74Dbf459950.1610.2796Yes
75Mcm360180.1590.2825Yes
76Tmpo62470.1540.2749Yes
77Dtymk62580.1530.2783Yes
78Atrx62590.1530.2821Yes
79Tent4a63250.1500.2826Yes
80Tra2b64100.1470.2821Yes
81Ewsr164340.1460.2846Yes
82Pttg165660.1410.2816Yes
83Amd166130.1380.2827Yes
84Ncl66260.1380.2856Yes
85Kif20b66760.1350.2866Yes
86Nasp67080.1330.2884Yes
87Tpx267660.1300.2888Yes
88Mcm668150.1280.2896Yes
89Smc268700.1270.2900Yes
90Bard170530.1180.2838No
91Cul371120.1160.2838No
92Mki6771650.1140.2841No
93Rbl172380.1100.2832No
94Cdc25a73050.1080.2826No
95Smarcc174270.1030.2791No
96Ezh274780.1010.2791No
97Stil75240.0990.2794No
98Cdc675770.0970.2792No
99Srsf1076290.0940.2790No
100Odf276470.0930.2805No
101Top178690.0830.2714No
102Kif481550.0710.2588No
103Cul581870.0700.2590No
104Suv39h182480.0670.2577No
105Cks282810.0660.2578No
106Slc7a183690.0630.2549No
107Mapk1483850.0620.2557No
108Pds5b84380.0600.2546No
109Stag184620.0580.2549No
110Prpf4b84880.0570.2551No
111Hira86310.0510.2492No
112Cul4a86730.0490.2484No
113Kif2286880.0490.2489No
114Ttk88330.0440.2428No
115Wrn88750.0430.2418No
116Srsf289350.0400.2398No
117Tnpo289870.0390.2382No
118Nolc190040.0380.2384No
119Gspt190900.0340.2349No
120Mcm290980.0330.2354No
121Bcl391690.0310.2327No
122Kif1591910.0300.2324No
123Prim293230.0240.2264No
124Nsd294200.0220.2221No
125Fbxo596100.0150.2130No
126Orc596650.0120.2105No
127Ss1898030.0070.2038No
128Mtf298490.0060.2017No
129Arid4a98990.0040.1993No
130Abl110196-0.0020.1844No
131H2ax10213-0.0020.1837No
132Ccnb210345-0.0070.1773No
133Tle310377-0.0090.1759No
134Smad310394-0.0090.1754No
135Cenpa10618-0.0180.1646No
136Racgap110715-0.0210.1603No
137Dmd10758-0.0220.1587No
138E2f310762-0.0230.1591No
139Pbk10767-0.0230.1595No
140Gins210864-0.0260.1553No
141H2az111062-0.0350.1463No
142Exo111084-0.0360.1461No
143Ythdc111152-0.0390.1437No
144Bub311172-0.0390.1437No
145Cbx111261-0.0430.1404No
146Ube2s11602-0.0560.1247No
147Pafah1b111717-0.0610.1204No
148Knl111775-0.0630.1192No
149Rps6ka512033-0.0730.1080No
150Foxn312175-0.0790.1029No
151Cdc4512215-0.0810.1030No
152Ccnt112307-0.0840.1005No
153Smc412449-0.0910.0957No
154Chek112464-0.0910.0973No
155Brca212500-0.0930.0979No
156Nusap112639-0.0990.0934No
157Traip12837-0.1060.0861No
158Cks1b12941-0.1100.0837No
159Troap12976-0.1120.0848No
160Kmt5a13504-0.1300.0615No
161Katna113608-0.1340.0597No
162Kif5b13623-0.1350.0624No
163Aurka13694-0.1380.0623No
164Rad54l13821-0.1440.0596No
165Hmga1b13824-0.1440.0631No
166Pole13873-0.1460.0644No
167Cdc2713964-0.1500.0636No
168Rasal214070-0.1540.0622No
169Mnat114240-0.1610.0578No
170Prmt514442-0.1710.0520No
171Pml14635-0.1800.0468No
172Sap3014709-0.1840.0478No
173Casp8ap215104-0.2040.0331No
174Meis215275-0.2110.0298No
175E2f115992-0.243-0.0002No
176Pola216399-0.268-0.0139No
177Meis116460-0.271-0.0101No
178Cdkn1b16691-0.283-0.0146No
179Dkc116702-0.283-0.0079No
180Myc16912-0.295-0.0110No
181Cdk416993-0.301-0.0075No
182Hmgb317540-0.331-0.0267No
183Slc7a517570-0.333-0.0197No
184Tgfb117835-0.355-0.0241No
185Hus117915-0.360-0.0190No
186Atf518225-0.387-0.0248No
187Rpa218522-0.411-0.0294No
188Efna518815-0.444-0.0329No
189Orc619049-0.477-0.0327No
190H2az219427-0.554-0.0377No
191Pura19461-0.563-0.0252No
192Snrpd119492-0.569-0.0123No
193Stmn119905-0.772-0.0137No
194Egf19914-0.7820.0056No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT