| Dataset | GMP.GMP.neu_Pheno.cls #Group1_versus_Group4.GMP.neu_Pheno.cls #Group1_versus_Group4_repos |
| Phenotype | GMP.neu_Pheno.cls#Group1_versus_Group4_repos |
| Upregulated in class | 0 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | 0.15822774 |
| Normalized Enrichment Score (NES) | 0.7193389 |
| Nominal p-value | 0.960499 |
| FDR q-value | 1.0 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Pdzk1 | 65 | 1.004 | 0.0267 | Yes |
| 2 | Sema3b | 181 | 0.818 | 0.0454 | Yes |
| 3 | Klf4 | 201 | 0.806 | 0.0685 | Yes |
| 4 | Slc16a1 | 274 | 0.766 | 0.0878 | Yes |
| 5 | Aldh3a2 | 524 | 0.641 | 0.0945 | Yes |
| 6 | Kif20a | 535 | 0.639 | 0.1131 | Yes |
| 7 | Pkp3 | 646 | 0.602 | 0.1255 | Yes |
| 8 | Fkbp4 | 971 | 0.529 | 0.1251 | Yes |
| 9 | Gjb3 | 1500 | 0.452 | 0.1120 | Yes |
| 10 | Dynlt3 | 1774 | 0.425 | 0.1110 | Yes |
| 11 | Farp1 | 1801 | 0.423 | 0.1223 | Yes |
| 12 | Plac1 | 1823 | 0.421 | 0.1339 | Yes |
| 13 | Dcxr | 1952 | 0.408 | 0.1396 | Yes |
| 14 | Opn3 | 2546 | 0.359 | 0.1205 | Yes |
| 15 | St6galnac2 | 2637 | 0.353 | 0.1265 | Yes |
| 16 | Top2a | 3005 | 0.328 | 0.1179 | Yes |
| 17 | Sgk1 | 3161 | 0.314 | 0.1195 | Yes |
| 18 | S100a9 | 3200 | 0.310 | 0.1268 | Yes |
| 19 | Tfpi2 | 3331 | 0.301 | 0.1293 | Yes |
| 20 | Aldh3b1 | 3352 | 0.299 | 0.1372 | Yes |
| 21 | Blvrb | 3416 | 0.294 | 0.1428 | Yes |
| 22 | Cdc20 | 3474 | 0.291 | 0.1486 | Yes |
| 23 | Jak1 | 3506 | 0.288 | 0.1557 | Yes |
| 24 | Mest | 3649 | 0.281 | 0.1569 | Yes |
| 25 | Ccnd1 | 3786 | 0.272 | 0.1582 | Yes |
| 26 | Id2 | 4581 | 0.233 | 0.1252 | No |
| 27 | Elovl5 | 4701 | 0.225 | 0.1260 | No |
| 28 | Abhd2 | 5056 | 0.211 | 0.1145 | No |
| 29 | Nab2 | 5087 | 0.209 | 0.1192 | No |
| 30 | Mapk13 | 5121 | 0.207 | 0.1238 | No |
| 31 | Scarb1 | 5138 | 0.206 | 0.1291 | No |
| 32 | Amfr | 5227 | 0.201 | 0.1307 | No |
| 33 | Hspa4l | 5279 | 0.199 | 0.1341 | No |
| 34 | Rnaseh2a | 5361 | 0.194 | 0.1358 | No |
| 35 | Il6st | 5708 | 0.175 | 0.1236 | No |
| 36 | Sfn | 5740 | 0.173 | 0.1272 | No |
| 37 | Plk4 | 5751 | 0.173 | 0.1319 | No |
| 38 | Ugdh | 5813 | 0.170 | 0.1339 | No |
| 39 | Itpk1 | 5820 | 0.169 | 0.1387 | No |
| 40 | Xbp1 | 5857 | 0.168 | 0.1419 | No |
| 41 | Zfp36 | 5867 | 0.167 | 0.1464 | No |
| 42 | Tmprss3 | 5922 | 0.165 | 0.1486 | No |
| 43 | Ncor2 | 6008 | 0.160 | 0.1491 | No |
| 44 | Cd9 | 6048 | 0.157 | 0.1518 | No |
| 45 | Fkbp5 | 6073 | 0.156 | 0.1553 | No |
| 46 | Tiam1 | 6808 | 0.128 | 0.1222 | No |
| 47 | Lsr | 6810 | 0.128 | 0.1260 | No |
| 48 | Cyp26b1 | 6974 | 0.123 | 0.1214 | No |
| 49 | Aff1 | 6992 | 0.121 | 0.1242 | No |
| 50 | Rps6ka2 | 7240 | 0.110 | 0.1151 | No |
| 51 | Gale | 7372 | 0.105 | 0.1116 | No |
| 52 | Homer2 | 7384 | 0.105 | 0.1142 | No |
| 53 | Cacna2d2 | 7398 | 0.104 | 0.1166 | No |
| 54 | Stil | 7524 | 0.099 | 0.1133 | No |
| 55 | Tob1 | 7527 | 0.099 | 0.1162 | No |
| 56 | Cdc6 | 7577 | 0.097 | 0.1166 | No |
| 57 | Dusp2 | 7602 | 0.096 | 0.1183 | No |
| 58 | Tpd52l1 | 7618 | 0.095 | 0.1203 | No |
| 59 | Ptpn6 | 7640 | 0.093 | 0.1221 | No |
| 60 | Isg20 | 8037 | 0.076 | 0.1044 | No |
| 61 | Fabp5 | 8116 | 0.073 | 0.1027 | No |
| 62 | Pdcd4 | 8182 | 0.070 | 0.1015 | No |
| 63 | Add3 | 8298 | 0.065 | 0.0977 | No |
| 64 | Rab31 | 8509 | 0.056 | 0.0888 | No |
| 65 | Cdh1 | 8575 | 0.053 | 0.0871 | No |
| 66 | Mocs2 | 8637 | 0.050 | 0.0855 | No |
| 67 | Fos | 8800 | 0.045 | 0.0788 | No |
| 68 | Rapgefl1 | 8941 | 0.040 | 0.0729 | No |
| 69 | Jak2 | 8983 | 0.039 | 0.0720 | No |
| 70 | Prkar2b | 9083 | 0.034 | 0.0680 | No |
| 71 | Tst | 9099 | 0.033 | 0.0683 | No |
| 72 | Btg3 | 9322 | 0.024 | 0.0578 | No |
| 73 | Gla | 9346 | 0.024 | 0.0574 | No |
| 74 | Ass1 | 9618 | 0.014 | 0.0442 | No |
| 75 | Ptges | 9776 | 0.008 | 0.0366 | No |
| 76 | Rabep1 | 9788 | 0.008 | 0.0362 | No |
| 77 | Dlg5 | 9818 | 0.007 | 0.0350 | No |
| 78 | Mdk | 9828 | 0.007 | 0.0347 | No |
| 79 | Plaat3 | 10178 | -0.001 | 0.0172 | No |
| 80 | Atp2b4 | 10241 | -0.004 | 0.0142 | No |
| 81 | Clic3 | 10271 | -0.005 | 0.0128 | No |
| 82 | Idh2 | 10311 | -0.006 | 0.0111 | No |
| 83 | Bag1 | 10312 | -0.006 | 0.0112 | No |
| 84 | Bcl2 | 10348 | -0.008 | 0.0097 | No |
| 85 | Papss2 | 10439 | -0.011 | 0.0055 | No |
| 86 | Slc26a2 | 10519 | -0.013 | 0.0019 | No |
| 87 | Chpt1 | 10565 | -0.015 | 0.0001 | No |
| 88 | Llgl2 | 10666 | -0.020 | -0.0043 | No |
| 89 | Gins2 | 10864 | -0.026 | -0.0135 | No |
| 90 | Slc2a8 | 10877 | -0.027 | -0.0133 | No |
| 91 | Dhcr7 | 11026 | -0.033 | -0.0197 | No |
| 92 | Cd44 | 11127 | -0.038 | -0.0237 | No |
| 93 | Myb | 11389 | -0.048 | -0.0354 | No |
| 94 | Slc22a5 | 11439 | -0.050 | -0.0363 | No |
| 95 | Abca3 | 11508 | -0.053 | -0.0382 | No |
| 96 | Etfb | 11515 | -0.053 | -0.0369 | No |
| 97 | Cav1 | 11762 | -0.062 | -0.0474 | No |
| 98 | Unc13b | 11950 | -0.070 | -0.0547 | No |
| 99 | Sult2b1 | 12004 | -0.072 | -0.0552 | No |
| 100 | Hr | 12132 | -0.078 | -0.0593 | No |
| 101 | Tnnc1 | 12308 | -0.084 | -0.0656 | No |
| 102 | Flnb | 12890 | -0.108 | -0.0916 | No |
| 103 | Chst8 | 13057 | -0.114 | -0.0966 | No |
| 104 | Slc27a2 | 13216 | -0.119 | -0.1009 | No |
| 105 | Large1 | 13621 | -0.134 | -0.1173 | No |
| 106 | Perp | 13634 | -0.135 | -0.1138 | No |
| 107 | Olfm1 | 14017 | -0.152 | -0.1285 | No |
| 108 | Dnajc1 | 14082 | -0.155 | -0.1271 | No |
| 109 | Wfs1 | 14123 | -0.157 | -0.1244 | No |
| 110 | Il17rb | 14141 | -0.158 | -0.1205 | No |
| 111 | Cox6c | 14406 | -0.170 | -0.1288 | No |
| 112 | Mettl3 | 14410 | -0.170 | -0.1238 | No |
| 113 | Siah2 | 14423 | -0.171 | -0.1193 | No |
| 114 | Fdft1 | 14551 | -0.176 | -0.1205 | No |
| 115 | Impa2 | 14610 | -0.179 | -0.1180 | No |
| 116 | Arl3 | 14627 | -0.180 | -0.1135 | No |
| 117 | St14 | 14667 | -0.182 | -0.1100 | No |
| 118 | Snx10 | 14887 | -0.193 | -0.1152 | No |
| 119 | Rbbp8 | 14924 | -0.195 | -0.1112 | No |
| 120 | Nrip1 | 15087 | -0.203 | -0.1133 | No |
| 121 | Prlr | 15257 | -0.211 | -0.1155 | No |
| 122 | Scube2 | 15261 | -0.211 | -0.1093 | No |
| 123 | Anxa9 | 15421 | -0.216 | -0.1108 | No |
| 124 | Slc29a1 | 15509 | -0.219 | -0.1087 | No |
| 125 | Dnajc12 | 15889 | -0.237 | -0.1207 | No |
| 126 | Sord | 16251 | -0.260 | -0.1311 | No |
| 127 | Celsr2 | 16343 | -0.265 | -0.1277 | No |
| 128 | Ptger3 | 16394 | -0.267 | -0.1223 | No |
| 129 | Hmgcs2 | 16551 | -0.275 | -0.1219 | No |
| 130 | Cpe | 16613 | -0.279 | -0.1166 | No |
| 131 | Scnn1a | 16645 | -0.280 | -0.1098 | No |
| 132 | Frk | 16743 | -0.285 | -0.1062 | No |
| 133 | Mapt | 16837 | -0.291 | -0.1022 | No |
| 134 | Gper1 | 17413 | -0.324 | -0.1214 | No |
| 135 | Slc7a5 | 17570 | -0.333 | -0.1193 | No |
| 136 | Cish | 17693 | -0.342 | -0.1153 | No |
| 137 | Nxt1 | 17883 | -0.357 | -0.1141 | No |
| 138 | Tjp3 | 17909 | -0.360 | -0.1046 | No |
| 139 | Myof | 17993 | -0.367 | -0.0978 | No |
| 140 | Tspan13 | 18189 | -0.384 | -0.0961 | No |
| 141 | Igfbp4 | 18276 | -0.392 | -0.0887 | No |
| 142 | Ltf | 18616 | -0.420 | -0.0932 | No |
| 143 | Kcnk5 | 18740 | -0.434 | -0.0864 | No |
| 144 | Slc1a4 | 18876 | -0.455 | -0.0796 | No |
| 145 | Batf | 19118 | -0.488 | -0.0771 | No |
| 146 | Pgr | 19164 | -0.497 | -0.0645 | No |
| 147 | Ppif | 19321 | -0.529 | -0.0566 | No |
| 148 | Gfus | 19417 | -0.550 | -0.0449 | No |
| 149 | Slc24a3 | 19426 | -0.554 | -0.0287 | No |
| 150 | Xrcc3 | 19649 | -0.615 | -0.0215 | No |
| 151 | Car2 | 19749 | -0.652 | -0.0070 | No |
| 152 | Car12 | 19844 | -0.699 | 0.0092 | No |

