Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group1_versus_Group4.GMP.neu_Pheno.cls #Group1_versus_Group4_repos
Phenotype	GMP.neu_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_COMPLEMENT
Enrichment Score (ES)	-0.19484447
Normalized Enrichment Score (NES)	-0.9530769
Nominal p-value	0.53638256
FDR q-value	0.81277126
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	F3	97	0.928	0.0195	No
2	Scg3	124	0.875	0.0411	No
3	Tnfaip3	134	0.861	0.0632	No
4	Cd36	688	0.590	0.0509	No
5	Dgkh	875	0.551	0.0560	No
6	Irf1	926	0.538	0.0676	No
7	Ang	1136	0.507	0.0704	No
8	Brpf3	1400	0.466	0.0694	No
9	L3mbtl4	1443	0.460	0.0793	No
10	F10	2144	0.394	0.0545	No
11	Cda	2244	0.384	0.0596	No
12	Cpm	2325	0.377	0.0654	No
13	Cdh13	2333	0.377	0.0749	No
14	Gp9	2438	0.367	0.0793	No
15	Fn1	2551	0.358	0.0831	No
16	Pclo	2643	0.352	0.0878	No
17	Dyrk2	2740	0.342	0.0919	No
18	Lgals3	3041	0.324	0.0853	No
19	Gp1ba	3067	0.322	0.0925	No
20	Fdx1	3122	0.318	0.0981	No
21	S100a9	3200	0.310	0.1024	No
22	Tfpi2	3331	0.301	0.1037	No
23	Fcnb	3384	0.297	0.1089	No
24	Timp2	3441	0.293	0.1138	No
25	Ctso	3544	0.285	0.1161	No
26	F5	3913	0.268	0.1046	No
27	Calm3	4057	0.259	0.1042	No
28	Hspa1a	4070	0.259	0.1104	No
29	Ehd1	4268	0.246	0.1069	No
30	C3	4276	0.246	0.1130	No
31	Plaur	4329	0.242	0.1168	No
32	Usp8	4332	0.242	0.1230	No
33	Rbsn	4352	0.240	0.1284	No
34	Dusp6	4636	0.229	0.1201	No
35	Gmfb	4708	0.225	0.1225	No
36	C1qc	4831	0.221	0.1221	No
37	Cebpb	5204	0.202	0.1087	No
38	Cr2	5458	0.188	0.1009	No
39	Prdm4	5482	0.187	0.1046	No
40	S100a13	5522	0.185	0.1075	No
41	Ctsd	5705	0.175	0.1030	No
42	Was	5758	0.173	0.1049	No
43	Ctsl	5766	0.172	0.1090	No
44	Actn2	5786	0.171	0.1126	No
45	Src	5892	0.166	0.1116	No
46	Gnai3	5986	0.161	0.1112	No
47	Kcnip3	6435	0.146	0.0924	No
48	Raf1	6480	0.145	0.0940	No
49	Hspa5	6745	0.131	0.0842	No
50	Gnai2	6994	0.121	0.0749	No
51	Grb2	7055	0.118	0.0750	No
52	Ctsc	7277	0.109	0.0667	No
53	Zfpm2	7348	0.106	0.0659	No
54	Cfb	7486	0.100	0.0617	No
55	Itgam	7505	0.100	0.0634	No
56	Gpd2	7570	0.097	0.0627	No
57	Lta4h	7617	0.095	0.0629	No
58	Plek	7674	0.092	0.0625	No
59	Rnf4	7687	0.091	0.0643	No
60	Olr1	7808	0.086	0.0605	No
61	Maff	7828	0.085	0.0617	No
62	Lcp2	8151	0.072	0.0474	No
63	Xpnpep1	8192	0.070	0.0472	No
64	Cp	8220	0.068	0.0477	No
65	Prkcd	8358	0.063	0.0424	No
66	Vcpip1	8503	0.057	0.0367	No
67	Usp16	8748	0.047	0.0256	No
68	Jak2	8983	0.039	0.0149	No
69	Cblb	9032	0.037	0.0134	No
70	Notch4	9043	0.036	0.0138	No
71	Psen1	9111	0.033	0.0113	No
72	Kcnip2	9177	0.031	0.0089	No
73	Mmp14	9473	0.020	-0.0055	No
74	Prep	9534	0.018	-0.0080	No
75	F7	9863	0.005	-0.0244	No
76	Prcp	9972	0.001	-0.0298	No
77	Zeb1	10243	-0.004	-0.0433	No
78	Prss36	10658	-0.019	-0.0636	No
79	Ppp2cb	10701	-0.021	-0.0652	No
80	Rhog	10986	-0.031	-0.0787	No
81	Adam9	11198	-0.041	-0.0882	No
82	Usp14	11315	-0.045	-0.0929	No
83	Lyn	11326	-0.045	-0.0922	No
84	Dgkg	11340	-0.046	-0.0916	No
85	Sh2b3	11380	-0.048	-0.0923	No
86	Ppp4c	11548	-0.054	-0.0993	No
87	Pla2g4a	11600	-0.056	-0.1004	No
88	Pik3ca	11696	-0.060	-0.1036	No
89	Gnb4	11758	-0.062	-0.1051	No
90	Plscr1	11760	-0.062	-0.1035	No
91	Serpinb2	11962	-0.070	-0.1118	No
92	Lap3	12071	-0.075	-0.1152	No
93	Gca	12105	-0.077	-0.1149	No
94	Pim1	12295	-0.083	-0.1222	No
95	Pik3cg	12429	-0.090	-0.1265	No
96	Dock10	12778	-0.104	-0.1413	No
97	Dock4	12846	-0.106	-0.1419	No
98	Plg	12910	-0.109	-0.1422	No
99	Lck	12912	-0.109	-0.1394	No
100	Col4a2	12935	-0.110	-0.1376	No
101	Rabif	13144	-0.116	-0.1450	No
102	Kif2a	13406	-0.126	-0.1549	No
103	Lipa	13420	-0.127	-0.1522	No
104	Anxa5	13429	-0.127	-0.1493	No
105	Lamp2	13467	-0.129	-0.1478	No
106	Akap10	13477	-0.129	-0.1448	No
107	Dusp5	13491	-0.129	-0.1421	No
108	F8	13564	-0.132	-0.1422	No
109	Dock9	13627	-0.135	-0.1418	No
110	Gng2	13659	-0.136	-0.1398	No
111	Casp4	13675	-0.137	-0.1370	No
112	Usp15	13680	-0.137	-0.1336	No
113	Ctsb	13761	-0.141	-0.1339	No
114	Phex	14195	-0.159	-0.1516	No
115	Irf2	14202	-0.160	-0.1477	No
116	Klkb1	14212	-0.160	-0.1439	No
117	Sirt6	14466	-0.173	-0.1521	No
118	Pfn1	14996	-0.199	-0.1735	No
119	Gata3	15031	-0.200	-0.1700	No
120	Cdk5r1	15035	-0.200	-0.1649	No
121	Cfh	15274	-0.211	-0.1713	No
122	Stx4a	15530	-0.219	-0.1784	No
123	Pik3r5	15662	-0.225	-0.1791	No
124	Casp7	15791	-0.231	-0.1795	No
125	Csrp1	15817	-0.233	-0.1746	No
126	Serpinc1	15824	-0.233	-0.1688	No
127	Cpq	15831	-0.234	-0.1630	No
128	Me1	15910	-0.238	-0.1607	No
129	Gnb2	15979	-0.242	-0.1577	No
130	Lrp1	16308	-0.263	-0.1673	No
131	Ctss	16561	-0.275	-0.1728	No
132	Apoc1	16615	-0.279	-0.1681	No
133	Clu	16831	-0.290	-0.1713	No
134	Hnf4a	17216	-0.312	-0.1825	No
135	Lgmn	17344	-0.319	-0.1805	No
136	Irf7	17630	-0.337	-0.1860	Yes
137	Calm1	17642	-0.339	-0.1777	Yes
138	Rce1	17643	-0.339	-0.1688	Yes
139	Atox1	17697	-0.342	-0.1625	Yes
140	Rasgrp1	17766	-0.349	-0.1567	Yes
141	Fyn	17829	-0.354	-0.1506	Yes
142	Gngt2	17926	-0.361	-0.1459	Yes
143	Pcsk9	17973	-0.365	-0.1387	Yes
144	Fcer1g	18045	-0.371	-0.1325	Yes
145	Casp1	18054	-0.371	-0.1232	Yes
146	Pla2g7	18240	-0.388	-0.1223	Yes
147	Pdp1	18330	-0.397	-0.1163	Yes
148	Ltf	18616	-0.420	-0.1197	Yes
149	Kynu	18694	-0.428	-0.1123	Yes
150	Spock2	19081	-0.482	-0.1191	Yes
151	Psmb9	19129	-0.490	-0.1086	Yes
152	Dpp4	19243	-0.516	-0.1008	Yes
153	Msrb1	19273	-0.523	-0.0885	Yes
154	Ctsh	19309	-0.527	-0.0764	Yes
155	Casp9	19581	-0.593	-0.0745	Yes
156	Pdgfb	19724	-0.642	-0.0648	Yes
157	Car2	19749	-0.652	-0.0489	Yes
158	Casp3	19766	-0.656	-0.0325	Yes
159	Cd46	19907	-0.775	-0.0192	Yes
160	C2	19992	-0.959	0.0017	Yes