Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group1_versus_Group3.GMP.neu_Pheno.cls #Group1_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	0
GeneSet	HALLMARK_MYOGENESIS
Enrichment Score (ES)	0.23361401
Normalized Enrichment Score (NES)	0.9509518
Nominal p-value	0.550813
FDR q-value	0.83284163
FWER p-Value	0.995

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Adam12	63	0.888	0.0223	Yes
2	Myom1	126	0.804	0.0423	Yes
3	Pfkm	180	0.750	0.0612	Yes
4	Gja5	192	0.733	0.0817	Yes
5	Sh3bgr	250	0.686	0.0986	Yes
6	Cd36	308	0.654	0.1145	Yes
7	Flii	479	0.584	0.1227	Yes
8	Eif4a2	624	0.547	0.1312	Yes
9	Fgf2	966	0.466	0.1274	Yes
10	Tnnc1	1008	0.461	0.1386	Yes
11	Sptan1	1022	0.459	0.1512	Yes
12	Kcnh2	1157	0.440	0.1571	Yes
13	Sphk1	1194	0.434	0.1677	Yes
14	Bin1	1201	0.433	0.1799	Yes
15	Myh11	1304	0.421	0.1868	Yes
16	Col4a2	1526	0.394	0.1870	Yes
17	Myh9	1646	0.380	0.1920	Yes
18	Lsp1	1652	0.380	0.2026	Yes
19	Fhl1	1699	0.374	0.2110	Yes
20	Pkia	1849	0.358	0.2138	Yes
21	Rit1	1942	0.350	0.2193	Yes
22	Col15a1	2333	0.320	0.2088	Yes
23	Itgb4	2356	0.318	0.2169	Yes
24	Klf5	2369	0.317	0.2254	Yes
25	Itgb1	2450	0.309	0.2303	Yes
26	Igf1	2730	0.287	0.2245	Yes
27	Myoz1	2837	0.280	0.2272	Yes
28	Nqo1	3082	0.265	0.2225	Yes
29	Pick1	3137	0.262	0.2273	Yes
30	Large1	3187	0.258	0.2323	Yes
31	Pygm	3305	0.251	0.2336	Yes
32	Eno3	3642	0.232	0.2234	No
33	Ifrd1	4270	0.205	0.1977	No
34	Mef2d	4427	0.197	0.1956	No
35	Cdh13	4643	0.187	0.1901	No
36	Ocel1	4667	0.186	0.1943	No
37	Mras	4901	0.176	0.1877	No
38	Tnnt1	4976	0.173	0.1889	No
39	Aplnr	4981	0.173	0.1937	No
40	Stc2	5020	0.171	0.1967	No
41	Atp2a1	5030	0.171	0.2012	No
42	Gabarapl2	5064	0.169	0.2044	No
43	Svil	5310	0.158	0.1966	No
44	Sorbs1	5371	0.155	0.1980	No
45	Fkbp1b	5588	0.147	0.1914	No
46	Atp6ap1	5642	0.145	0.1928	No
47	Clu	5700	0.142	0.1940	No
48	Akt2	6114	0.124	0.1769	No
49	Hdac5	6220	0.120	0.1750	No
50	Nos1	6447	0.111	0.1668	No
51	Camk2b	6569	0.106	0.1638	No
52	Gnao1	7109	0.086	0.1392	No
53	Notch1	7162	0.083	0.1389	No
54	Nav2	7259	0.080	0.1364	No
55	Ptp4a3	7278	0.080	0.1378	No
56	Bhlhe40	7721	0.065	0.1174	No
57	Adcy9	7728	0.064	0.1190	No
58	Kcnh1	7794	0.062	0.1175	No
59	Tagln	8287	0.043	0.0940	No
60	Lpin1	8505	0.034	0.0841	No
61	Gaa	8743	0.027	0.0729	No
62	Csrp3	8761	0.026	0.0728	No
63	Cox7a1	8839	0.023	0.0696	No
64	Ctf1	8858	0.022	0.0693	No
65	Hbegf	9179	0.011	0.0536	No
66	Actn2	9361	0.004	0.0446	No
67	Pde4dip	9413	0.003	0.0421	No
68	Col1a1	9476	0.000	0.0390	No
69	Mylpf	9567	-0.001	0.0345	No
70	Foxo4	9623	-0.003	0.0318	No
71	Smtn	9822	-0.009	0.0221	No
72	Rb1	9943	-0.013	0.0164	No
73	Gpx3	10098	-0.018	0.0092	No
74	Cdkn1a	10117	-0.019	0.0089	No
75	Kifc3	10150	-0.020	0.0078	No
76	Acsl1	10443	-0.031	-0.0060	No
77	Prnp	10673	-0.039	-0.0164	No
78	Lama2	10709	-0.041	-0.0170	No
79	Itgb5	10801	-0.044	-0.0203	No
80	Ncam1	10803	-0.044	-0.0191	No
81	Mapre3	10941	-0.049	-0.0245	No
82	Igfbp7	11038	-0.052	-0.0279	No
83	Mybpc3	11213	-0.058	-0.0350	No
84	Myl4	11224	-0.059	-0.0338	No
85	Tpm3	11347	-0.062	-0.0381	No
86	Agl	11703	-0.075	-0.0538	No
87	Tnnt3	11947	-0.085	-0.0636	No
88	Sh2b1	11980	-0.086	-0.0627	No
89	Mef2a	11992	-0.087	-0.0608	No
90	Sgcd	12111	-0.091	-0.0641	No
91	Fdps	12117	-0.091	-0.0618	No
92	Reep1	12717	-0.116	-0.0886	No
93	Cacna1h	12811	-0.119	-0.0898	No
94	Mylk	12873	-0.119	-0.0894	No
95	Myh8	12950	-0.122	-0.0898	No
96	Bag1	13075	-0.127	-0.0924	No
97	Schip1	13131	-0.129	-0.0914	No
98	Mef2c	13163	-0.130	-0.0893	No
99	App	13372	-0.138	-0.0957	No
100	Dtna	13498	-0.143	-0.0979	No
101	Gsn	13792	-0.154	-0.1082	No
102	Pdlim7	13819	-0.156	-0.1051	No
103	Erbb3	13966	-0.162	-0.1078	No
104	Tnni2	14321	-0.176	-0.1205	No
105	Pgam2	14468	-0.182	-0.1226	No
106	Slc6a8	14891	-0.200	-0.1381	No
107	Pcx	14916	-0.202	-0.1335	No
108	Myom2	15808	-0.245	-0.1713	No
109	Myo1c	15892	-0.249	-0.1683	No
110	Crat	15997	-0.253	-0.1662	No
111	Tsc2	16319	-0.271	-0.1746	No
112	Cnn3	16329	-0.272	-0.1673	No
113	Dmd	16355	-0.274	-0.1606	No
114	Ak1	16604	-0.289	-0.1648	No
115	Dapk2	16619	-0.289	-0.1572	No
116	Gadd45b	16622	-0.290	-0.1490	No
117	Sorbs3	16649	-0.291	-0.1420	No
118	Agrn	16797	-0.299	-0.1408	No
119	Ckmt2	16889	-0.305	-0.1366	No
120	Plxnb2	17043	-0.313	-0.1353	No
121	Dmpk	17242	-0.325	-0.1359	No
122	Tgfb1	17328	-0.329	-0.1307	No
123	Cfd	17884	-0.370	-0.1480	No
124	Actn3	18047	-0.383	-0.1452	No
125	Sirt2	18051	-0.383	-0.1343	No
126	Cryab	18279	-0.406	-0.1341	No
127	Tpm2	18360	-0.414	-0.1262	No
128	Syngr2	18476	-0.426	-0.1198	No
129	Sparc	18585	-0.435	-0.1127	No
130	Ankrd2	18596	-0.436	-0.1006	No
131	Psen2	18789	-0.460	-0.0971	No
132	Myl6b	19137	-0.508	-0.0999	No
133	Ache	19238	-0.526	-0.0899	No
134	Ryr1	19299	-0.539	-0.0774	No
135	Tpd52l1	19546	-0.593	-0.0727	No
136	Chrnb1	19621	-0.616	-0.0588	No
137	Ablim1	19670	-0.635	-0.0429	No
138	Wwtr1	19738	-0.658	-0.0274	No
139	Fst	19792	-0.684	-0.0104	No
140	Ppfia4	19898	-0.770	0.0064	No