DatasetGMP.GMP.neu_Pheno.cls
#Group1_versus_Group3.GMP.neu_Pheno.cls
#Group1_versus_Group3_repos
PhenotypeGMP.neu_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.31502214
Normalized Enrichment Score (NES)1.3556613
Nominal p-value0.13972056
FDR q-value0.5726308
FWER p-Value0.678
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Pttg11950.7320.0108Yes
2Slc12a29850.464-0.0159Yes
3E2f210420.456-0.0059Yes
4Rad2110930.4500.0043Yes
5Srsf111290.4440.0150Yes
6Rad54l12490.4280.0211Yes
7Ube2s12750.4260.0318Yes
8Kpnb113100.4210.0420Yes
9Odc114270.4040.0475Yes
10H2bc1214380.4020.0584Yes
11Hnrnpd14530.4010.0690Yes
12Hnrnpu16080.3850.0720Yes
13Incenp17130.3730.0773Yes
14Tra2b18320.3600.0815Yes
15Xpo119360.3510.0862Yes
16Cks219820.3450.0936Yes
17Kif2320220.3430.1013Yes
18Kif2220780.3390.1081Yes
19Chaf1a20820.3390.1175Yes
20Nek221460.3350.1238Yes
21Syncrip21660.3340.1322Yes
22Cdc721890.3310.1405Yes
23Kif2c23200.3200.1429Yes
24Tfdp124720.3070.1440Yes
25Lig326020.2970.1459Yes
26Cenpe26240.2950.1531Yes
27Lbr27880.2830.1529Yes
28Numa127980.2820.1603Yes
29Lmnb128890.2770.1636Yes
30Dr129160.2750.1700Yes
31Cdk129470.2730.1762Yes
32Top2a29770.2710.1824Yes
33Birc529960.2690.1891Yes
34Hspa830390.2680.1945Yes
35Abl131040.2630.1987Yes
36Upf131500.2610.2038Yes
37Ncl32350.2560.2067Yes
38Ttk33080.2510.2102Yes
39Sfpq33250.2490.2164Yes
40Srsf1034890.2390.2149Yes
41Plk135280.2360.2197Yes
42E2f337240.2270.2163Yes
43Bub139210.2180.2125Yes
44Plk439280.2180.2184Yes
45Nsd239750.2180.2222Yes
46Mcm339800.2180.2281Yes
47Notch240090.2160.2328Yes
48Ilf340180.2160.2385Yes
49Cdc25a40910.2130.2409Yes
50Nasp42310.2070.2397Yes
51Ythdc143020.2030.2419Yes
52Ddx39a43100.2030.2473Yes
53Slc38a143310.2020.2520Yes
54Chmp1a43340.2020.2576Yes
55Uck243900.1990.2604Yes
56Sap3043930.1990.2659Yes
57Mki6744990.1950.2661Yes
58Atrx46320.1880.2648Yes
59Katna146610.1870.2686Yes
60Racgap147600.1830.2688Yes
61Kif1547610.1830.2740Yes
62Cenpf47880.1820.2778Yes
63Cdc4548780.1770.2783Yes
64Kif449100.1760.2817Yes
65Kif5b49960.1720.2823Yes
66Aurkb51240.1660.2806Yes
67Tle351570.1650.2836Yes
68Fancc51900.1630.2866Yes
69Mcm552110.1620.2901Yes
70Orc552490.1600.2928Yes
71Suv39h155910.1470.2797Yes
72Tent4a56310.1450.2819Yes
73G3bp156750.1430.2837Yes
74Nolc156780.1430.2877Yes
75Kif1157020.1420.2905Yes
76Hmmr57820.1370.2904Yes
77Casp8ap258120.1360.2927Yes
78Stag159030.1320.2919Yes
79Smc1a59420.1310.2937Yes
80Smad359540.1300.2968Yes
81Exo159670.1300.2999Yes
82Smarcc160140.1280.3011Yes
83Sqle60320.1270.3039Yes
84Mcm261390.1230.3020Yes
85Jpt161410.1230.3054Yes
86Mtf263400.1150.2987Yes
87Tpx263420.1150.3019Yes
88Cul163500.1150.3048Yes
89Kif20b63640.1140.3073Yes
90Ccna263950.1130.3090Yes
91Arid4a63980.1130.3121Yes
92Prc164320.1110.3135Yes
93Pds5b65010.1090.3132Yes
94Chek165490.1070.3138Yes
95Prpf4b65850.1060.3150Yes
96Cdc668050.0970.3067No
97Espl168700.0950.3062No
98Gspt168720.0950.3088No
99Hira69440.0920.3078No
100Troap69670.0920.3093No
101Nup9870510.0880.3076No
102Rbl171250.0850.3063No
103Cdkn2c72390.0810.3029No
104Ccnt172830.0790.3029No
105Polq72880.0790.3050No
106Stil72920.0790.3070No
107E2f472990.0790.3090No
108Mcm674870.0740.3016No
109Ss1874970.0730.3032No
110Smc277020.0650.2948No
111Tnpo277380.0640.2948No
112Ccnf77880.0620.2941No
113Amd179130.0570.2894No
114Pafah1b179810.0540.2876No
115Top179870.0540.2888No
116Prmt580290.0530.2883No
117Pbk80310.0530.2897No
118Bcl380650.0520.2895No
119Bard180690.0520.2908No
120Map3k2081090.0500.2902No
121Ewsr181820.0470.2879No
122Rad23b83200.0410.2822No
123Rps6ka584040.0380.2791No
124Pole84370.0370.2785No
125Rpa284550.0360.2787No
126Tmpo84990.0350.2775No
127Prim285070.0340.2781No
128Ezh285820.0320.2752No
129Ndc8088940.0210.2601No
130Odf289180.0200.2595No
131Mybl289760.0180.2572No
132Aurka93320.0060.2394No
133Wrn93550.0050.2384No
134Cul593690.0040.2379No
135Cdkn1b93700.0040.2380No
136Nup509563-0.0000.2284No
137Brca29643-0.0030.2245No
138H2az19719-0.0060.2208No
139Cul39747-0.0070.2197No
140Foxn39875-0.0110.2136No
141Pola29881-0.0110.2136No
142Tacc39894-0.0110.2133No
143Dbf49936-0.0130.2116No
144Ctcf10094-0.0180.2042No
145E2f110393-0.0290.1900No
146Cdc2010435-0.0300.1888No
147Srsf210513-0.0330.1859No
148Cdc2710774-0.0430.1740No
149Hif1a10775-0.0430.1752No
150Mnat110820-0.0440.1742No
151Cul4a10856-0.0460.1737No
152Fbxo510987-0.0500.1686No
153Knl111145-0.0560.1623No
154Hmgb311254-0.0590.1585No
155Mapk1411427-0.0650.1516No
156Kmt5a11697-0.0750.1402No
157Slc7a111915-0.0840.1316No
158Smc412123-0.0910.1238No
159Cbx112281-0.0970.1186No
160Traip12503-0.1070.1104No
161Dtymk12774-0.1180.1001No
162Dkc112926-0.1210.0959No
163Pura12963-0.1220.0976No
164Gins213046-0.1250.0970No
165Meis113188-0.1310.0936No
166Bub313328-0.1370.0904No
167Cdc25b13600-0.1460.0809No
168Cenpa13798-0.1550.0753No
169Hus113800-0.1550.0796No
170Orc613810-0.1550.0835No
171Pml13849-0.1570.0860No
172Ube2c14090-0.1670.0786No
173Ccnb214201-0.1720.0779No
174Rasal214678-0.1900.0593No
175Efna514950-0.2030.0514No
176Slc7a515111-0.2120.0492No
177Cks1b15145-0.2130.0536No
178Dmd16355-0.2740.0003No
179H2ax16458-0.2800.0031No
180Mad2l116806-0.300-0.0059No
181Atf516819-0.3010.0019No
182Cdkn317040-0.313-0.0004No
183Tgfb117328-0.329-0.0055No
184Marcks17583-0.346-0.0086No
185Snrpd117832-0.365-0.0108No
186Nusap117844-0.366-0.0011No
187Hmga1b18287-0.406-0.0119No
188H2az218408-0.419-0.0061No
189Cdk418754-0.455-0.0107No
190Ccnd118879-0.471-0.0037No
191Egf19121-0.506-0.0016No
192Meis219162-0.5120.0109No
193Myc19254-0.5300.0212No
194Stmn119648-0.6270.0191No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT