Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group1_versus_Group3.GMP.neu_Pheno.cls #Group1_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.25374153
Normalized Enrichment Score (NES)	1.0558264
Nominal p-value	0.34179688
FDR q-value	1.0
FWER p-Value	0.97

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Adam12	63	0.888	0.0203	Yes
2	Matn2	160	0.767	0.0358	Yes
3	Fstl1	194	0.732	0.0535	Yes
4	Thbs1	235	0.704	0.0701	Yes
5	Bmp1	347	0.634	0.0813	Yes
6	Col5a1	656	0.536	0.0800	Yes
7	Mest	660	0.535	0.0940	Yes
8	Itga2	665	0.532	0.1079	Yes
9	Spp1	757	0.511	0.1168	Yes
10	Mmp14	876	0.483	0.1237	Yes
11	Jun	910	0.477	0.1347	Yes
12	Fgf2	966	0.466	0.1442	Yes
13	Cadm1	1038	0.456	0.1527	Yes
14	Nt5e	1144	0.442	0.1591	Yes
15	Loxl1	1285	0.424	0.1633	Yes
16	Itgb3	1377	0.411	0.1696	Yes
17	Cdh11	1476	0.398	0.1752	Yes
18	Col4a2	1526	0.394	0.1832	Yes
19	Plod1	1827	0.360	0.1776	Yes
20	Itga5	1924	0.352	0.1821	Yes
21	Col5a3	1952	0.349	0.1900	Yes
22	Col1a2	1986	0.345	0.1974	Yes
23	Fn1	2073	0.339	0.2021	Yes
24	Htra1	2231	0.329	0.2029	Yes
25	Cald1	2236	0.328	0.2114	Yes
26	Sgcb	2244	0.327	0.2197	Yes
27	Calu	2408	0.313	0.2198	Yes
28	Tfpi2	2435	0.311	0.2267	Yes
29	Copa	2442	0.310	0.2346	Yes
30	Itgb1	2450	0.309	0.2424	Yes
31	Cap2	2626	0.295	0.2414	Yes
32	Col12a1	2732	0.287	0.2437	Yes
33	Tnc	2807	0.281	0.2474	Yes
34	Gem	2940	0.273	0.2480	Yes
35	P3h1	2970	0.271	0.2537	Yes
36	Col4a1	3277	0.253	0.2450	No
37	Col7a1	3578	0.234	0.2362	No
38	Thbs2	3600	0.233	0.2413	No
39	Col16a1	3713	0.228	0.2417	No
40	Dpysl3	3933	0.218	0.2364	No
41	Notch2	4009	0.216	0.2384	No
42	Tgfbi	4300	0.203	0.2292	No
43	Col5a2	4344	0.201	0.2323	No
44	Anpep	4479	0.196	0.2308	No
45	Flna	4923	0.175	0.2131	No
46	Sat1	5528	0.150	0.1867	No
47	Tgm2	5593	0.147	0.1874	No
48	Gm21451	5833	0.135	0.1789	No
49	Gadd45a	6086	0.125	0.1696	No
50	Plaur	6088	0.125	0.1728	No
51	Ntm	6357	0.114	0.1624	No
52	Inhba	6383	0.113	0.1641	No
53	Itgav	6700	0.101	0.1509	No
54	Lama1	6801	0.097	0.1484	No
55	Cd44	7604	0.069	0.1099	No
56	Pmepa1	7636	0.068	0.1102	No
57	Fbn1	7750	0.063	0.1062	No
58	Tgfbr3	7951	0.055	0.0976	No
59	Sfrp4	8023	0.053	0.0954	No
60	Comp	8024	0.053	0.0968	No
61	Tagln	8287	0.043	0.0848	No
62	Dst	8302	0.042	0.0852	No
63	Timp3	8867	0.022	0.0574	No
64	Vcam1	9207	0.010	0.0406	No
65	Lamc1	9322	0.006	0.0350	No
66	Capg	9448	0.001	0.0288	No
67	Col1a1	9476	0.000	0.0274	No
68	Lrp1	9555	-0.000	0.0235	No
69	Tpm1	9570	-0.001	0.0228	No
70	Vegfa	9948	-0.013	0.0042	No
71	Tnfrsf12a	10092	-0.018	-0.0025	No
72	Gpc1	10198	-0.022	-0.0072	No
73	Qsox1	10293	-0.025	-0.0113	No
74	Pfn2	10553	-0.035	-0.0234	No
75	Lama2	10709	-0.041	-0.0301	No
76	Tpm4	10746	-0.042	-0.0308	No
77	Mcm7	10749	-0.042	-0.0298	No
78	Itgb5	10801	-0.044	-0.0312	No
79	Pcolce2	11018	-0.052	-0.0407	No
80	Rhob	11296	-0.061	-0.0530	No
81	Il15	11752	-0.078	-0.0738	No
82	Spock1	11960	-0.085	-0.0820	No
83	Nid2	12041	-0.088	-0.0837	No
84	Sgcd	12111	-0.091	-0.0847	No
85	Serpine2	12471	-0.105	-0.1000	No
86	Pcolce	12660	-0.113	-0.1065	No
87	Cdh6	12825	-0.119	-0.1116	No
88	Colgalt1	12871	-0.119	-0.1107	No
89	Mylk	12873	-0.119	-0.1076	No
90	Eno2	12908	-0.121	-0.1061	No
91	Fap	12938	-0.121	-0.1043	No
92	Fbn2	13129	-0.129	-0.1105	No
93	Fbln1	13142	-0.129	-0.1077	No
94	Bgn	13144	-0.129	-0.1043	No
95	Pdgfrb	13201	-0.132	-0.1036	No
96	Fuca1	13223	-0.133	-0.1012	No
97	Cdh2	13300	-0.135	-0.1014	No
98	Pvr	13668	-0.149	-0.1159	No
99	Basp1	13768	-0.153	-0.1168	No
100	Plod3	14154	-0.170	-0.1317	No
101	Dcn	14185	-0.171	-0.1287	No
102	Fstl3	14359	-0.178	-0.1327	No
103	Myl9	14532	-0.184	-0.1365	No
104	Efemp2	14560	-0.185	-0.1329	No
105	Slc6a8	14891	-0.200	-0.1442	No
106	Wipf1	14978	-0.204	-0.1431	No
107	Sntb1	15074	-0.209	-0.1424	No
108	Vim	15158	-0.214	-0.1409	No
109	Plod2	15689	-0.238	-0.1612	No
110	Fbln5	15911	-0.250	-0.1657	No
111	Id2	16011	-0.254	-0.1640	No
112	Pdlim4	16097	-0.259	-0.1614	No
113	Edil3	16381	-0.275	-0.1684	No
114	Gja1	16446	-0.280	-0.1642	No
115	Abi3bp	16538	-0.284	-0.1613	No
116	Fbln2	16549	-0.285	-0.1542	No
117	Gadd45b	16622	-0.290	-0.1502	No
118	Ppib	17295	-0.328	-0.1753	No
119	Tgfb1	17328	-0.329	-0.1682	No
120	Ecm2	17376	-0.333	-0.1618	No
121	Glipr1	17553	-0.345	-0.1615	No
122	Sdc1	17969	-0.377	-0.1724	No
123	Col11a1	18350	-0.413	-0.1806	No
124	Tpm2	18360	-0.414	-0.1701	No
125	Lgals1	18375	-0.415	-0.1598	No
126	Slit2	18414	-0.420	-0.1506	No
127	Magee1	18464	-0.425	-0.1418	No
128	Thy1	18574	-0.434	-0.1358	No
129	Sparc	18585	-0.435	-0.1248	No
130	Dab2	18604	-0.438	-0.1141	No
131	Vcan	18639	-0.442	-0.1041	No
132	Igfbp4	18799	-0.461	-0.0999	No
133	Lama3	18901	-0.474	-0.0925	No
134	Emp3	19178	-0.516	-0.0927	No
135	Fas	19313	-0.541	-0.0851	No
136	Slit3	19334	-0.545	-0.0717	No
137	Tnfaip3	19457	-0.573	-0.0627	No
138	Mmp2	19552	-0.594	-0.0517	No
139	Postn	19695	-0.644	-0.0418	No
140	Fzd8	19704	-0.648	-0.0250	No
141	Vegfc	19799	-0.688	-0.0116	No
142	Ecm1	19960	-0.867	0.0033	No