DatasetGMP.GMP.neu_Pheno.cls
#Group1_versus_Group3.GMP.neu_Pheno.cls
#Group1_versus_Group3_repos
PhenotypeGMP.neu_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class0
GeneSetHALLMARK_E2F_TARGETS
Enrichment Score (ES)0.28386414
Normalized Enrichment Score (NES)1.1893463
Nominal p-value0.29942417
FDR q-value0.9177874
FWER p-Value0.903
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_E2F_TARGETS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Ccne11810.7440.0123Yes
2Pttg11950.7320.0328Yes
3Donson7130.5200.0217Yes
4Cdca88720.4830.0276Yes
5Ipo710040.4620.0343Yes
6Rad2110930.4500.0428Yes
7Srsf111290.4440.0539Yes
8Bub1b12170.4310.0619Yes
9Ube2s12750.4260.0713Yes
10Dck13370.4160.0802Yes
11Hnrnpd14530.4010.0859Yes
12Mxd314700.3990.0966Yes
13Shmt115370.3920.1046Yes
14Tra2b18320.3600.1001Yes
15Xpo119360.3510.1050Yes
16Cks219820.3450.1127Yes
17Kif2220780.3390.1177Yes
18Syncrip21660.3340.1229Yes
19Anp32e21760.3320.1320Yes
20Cse1l22410.3280.1382Yes
21Prkdc23000.3230.1446Yes
22Kif2c23200.3200.1529Yes
23Rbbp723800.3160.1590Yes
24Smc324050.3140.1669Yes
25Atad225180.3040.1700Yes
26Hells25890.2980.1750Yes
27Cenpe26240.2950.1818Yes
28Lbr27880.2830.1817Yes
29Dnmt128020.2810.1892Yes
30Brms1l28570.2790.1945Yes
31Lmnb128890.2770.2009Yes
32Cdk129470.2730.2059Yes
33Top2a29770.2710.2123Yes
34Birc529960.2690.2191Yes
35Nup10730700.2660.2231Yes
36Pnn34800.2390.2093Yes
37Plk135280.2360.2138Yes
38Rpa135850.2340.2177Yes
39Dut37910.2240.2138Yes
40Plk439280.2180.2132Yes
41Mcm339800.2180.2169Yes
42Ilf340180.2160.2213Yes
43Zw1040250.2160.2272Yes
44Cdc25a40910.2130.2301Yes
45Exosc841450.2110.2335Yes
46Nasp42310.2070.2352Yes
47Ddx39a43100.2030.2371Yes
48Cbx543950.1990.2386Yes
49Mki6744990.1950.2390Yes
50Rad51ap145190.1940.2436Yes
51Psmc3ip47300.1840.2383Yes
52Racgap147600.1830.2421Yes
53Brca148590.1780.2423Yes
54Kif449100.1760.2449Yes
55Tfrc49750.1730.2466Yes
56Pms250220.1710.2492Yes
57Tbrg450290.1710.2539Yes
58Trip1351170.1670.2543Yes
59Aurkb51240.1660.2588Yes
60Mcm451340.1660.2631Yes
61Wee152060.1630.2642Yes
62Mcm552110.1620.2687Yes
63Rpa355900.1470.2538Yes
64Suv39h155910.1470.2581Yes
65Cit56610.1440.2587Yes
66Nolc156780.1430.2621Yes
67Hmmr57820.1370.2608Yes
68Nudt2158980.1320.2588Yes
69Ccp11059020.1320.2625Yes
70Stag159030.1320.2663Yes
71Chek259290.1310.2688Yes
72Smc1a59420.1310.2720Yes
73Tk160020.1280.2727Yes
74Phf5a61220.1240.2703Yes
75Mcm261390.1230.2730Yes
76Jpt161410.1230.2765Yes
77Ubr761540.1230.2794Yes
78Mms22l62040.1210.2805Yes
79Pan262690.1180.2806Yes
80Usp164250.1120.2760Yes
81Lig164790.1090.2765Yes
82Pds5b65010.1090.2786Yes
83Pold365050.1090.2816Yes
84Chek165490.1070.2825Yes
85Nop5665830.1060.2839Yes
86Psip167870.0980.2764No
87Espl168700.0950.2750No
88Gspt168720.0950.2777No
89E2f870270.0890.2725No
90Eif2s170700.0870.2729No
91Cdkn2c72390.0810.2668No
92Smc673970.0770.2611No
93Nup20574000.0770.2632No
94Mre11a74140.0760.2647No
95Mcm674870.0740.2632No
96Nap1l176460.0680.2572No
97Nup15376530.0680.2589No
98Ube2t77040.0650.2582No
99Prdx477890.0620.2558No
100Mlh178670.0590.2536No
101Rrm278830.0580.2545No
102Dlgap579710.0540.2517No
103Bard180690.0520.2483No
104Msh282110.0460.2425No
105Ncapd283330.0410.2376No
106Cnot983960.0380.2356No
107Rad5084190.0380.2355No
108Pole84370.0370.2357No
109Rpa284550.0360.2359No
110Tmpo84990.0350.2347No
111Prim285070.0340.2354No
112Nbn85380.0330.2348No
113Ezh285820.0320.2336No
114Gins486270.0300.2322No
115Pa2g486430.0300.2323No
116Gins188000.0250.2252No
117Spag589710.0180.2171No
118Mybl289760.0180.2174No
119Dclre1b90330.0160.2151No
120Ssrp192060.0100.2067No
121Aurka93320.0060.2005No
122Cdkn1b93700.0040.1988No
123Orc293760.0040.1987No
124Brca29643-0.0030.1853No
125H2az19719-0.0060.1817No
126Hmgb29815-0.0090.1772No
127Pola29881-0.0110.1742No
128Tacc39894-0.0110.1739No
129Kif18b10017-0.0160.1682No
130Dctpp110064-0.0170.1664No
131Lsm810086-0.0180.1659No
132Ctcf10094-0.0180.1660No
133Cdkn1a10117-0.0190.1655No
134Ran10276-0.0250.1582No
135Eed10308-0.0260.1574No
136Timeless10338-0.0270.1567No
137Rfc110378-0.0280.1556No
138Diaph310425-0.0300.1541No
139Cdc2010435-0.0300.1545No
140Srsf210513-0.0330.1516No
141Pcna10657-0.0390.1455No
142Pop710675-0.0390.1458No
143Mcm710749-0.0420.1433No
144Melk10751-0.0420.1445No
145Luc7l310754-0.0420.1456No
146Depdc1a10792-0.0440.1450No
147Spc2510867-0.0460.1426No
148Tubb510971-0.0500.1388No
149Pold110999-0.0510.1389No
150Xrcc611101-0.0540.1354No
151Hmgb311254-0.0590.1294No
152Ung11293-0.0600.1293No
153Mthfd211317-0.0620.1299No
154Ppm1d11614-0.0720.1170No
155Ak211975-0.0860.1013No
156Lyar12014-0.0870.1019No
157Wdr9012108-0.0910.0999No
158Smc412123-0.0910.1018No
159Pold212306-0.0980.0954No
160Prps112366-0.1010.0954No
161Ppp1r812368-0.1010.0982No
162Slbp12509-0.1070.0942No
163Trp5312517-0.1070.0970No
164Tipin12577-0.1100.0972No
165Rfc312634-0.1120.0976No
166Dek12932-0.1210.0861No
167Cdc25b13600-0.1460.0567No
168Hus113800-0.1550.0511No
169Orc613810-0.1550.0551No
170Asf1b14189-0.1710.0410No
171Ccnb214201-0.1720.0454No
172Rnaseh2a14265-0.1740.0472No
173Spc2414368-0.1780.0472No
174Paics14894-0.2000.0265No
175Tubg114988-0.2050.0277No
176Cks1b15145-0.2130.0260No
177Cenpm15150-0.2130.0319No
178Asf1a15195-0.2160.0359No
179Rfc215239-0.2180.0400No
180Snrpb15745-0.2420.0215No
181Ranbp116012-0.2540.0154No
182H2ax16458-0.2800.0011No
183Tcf1916745-0.295-0.0048No
184Mad2l116806-0.3000.0008No
185Gins316856-0.3030.0070No
186Cdkn317040-0.3130.0068No
187Cdca317382-0.333-0.0008No
188Pole417515-0.3420.0024No
189Rad51c17885-0.370-0.0055No
190Nme117932-0.3740.0029No
191Hmga1b18287-0.406-0.0032No
192Cdk418754-0.455-0.0136No
193Rad118773-0.458-0.0013No
194Myc19254-0.530-0.0103No
195Ing319264-0.5320.0046No
196Dscc119326-0.5430.0172No
197Stmn119648-0.6270.0191No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_E2F_TARGETS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_E2F_TARGETS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_E2F_TARGETS