Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	GMP.GMP.neu_Pheno.cls #Group1_versus_Group3.GMP.neu_Pheno.cls #Group1_versus_Group3_repos
Phenotype	GMP.neu_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.2370069
Normalized Enrichment Score (NES)	-1.1102942
Nominal p-value	0.26464647
FDR q-value	0.7843695
FWER p-Value	0.965

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Hmox1	86	0.843	0.0278	No
2	Cd38	683	0.527	0.0180	No
3	Jun	910	0.477	0.0248	No
4	Sptan1	1022	0.459	0.0367	No
5	Ppp3r1	1845	0.359	0.0091	No
6	Cth	1920	0.353	0.0188	No
7	Slc20a1	2079	0.339	0.0238	No
8	Atf3	2297	0.323	0.0252	No
9	Bcap31	2907	0.275	0.0051	No
10	Top2a	2977	0.271	0.0120	No
11	Igf2r	3142	0.262	0.0137	No
12	Ctnnb1	3358	0.247	0.0123	No
13	Dnajc3	4015	0.216	-0.0124	No
14	Ppt1	4203	0.209	-0.0139	No
15	Irf1	4294	0.204	-0.0106	No
16	Nefh	4506	0.194	-0.0138	No
17	Etf1	4540	0.193	-0.0081	No
18	Dap3	4636	0.188	-0.0057	No
19	Brca1	4859	0.178	-0.0101	No
20	Lef1	5195	0.163	-0.0207	No
21	Wee1	5206	0.163	-0.0150	No
22	Cyld	5281	0.159	-0.0127	No
23	Gpx4	5307	0.158	-0.0079	No
24	Cd14	5369	0.155	-0.0051	No
25	Sat1	5528	0.150	-0.0073	No
26	Xiap	5619	0.146	-0.0063	No
27	Clu	5700	0.142	-0.0049	No
28	Rnasel	5820	0.135	-0.0057	No
29	Casp2	5880	0.133	-0.0036	No
30	Dnaja1	6000	0.128	-0.0047	No
31	Gadd45a	6086	0.125	-0.0042	No
32	Fdxr	6508	0.108	-0.0212	No
33	Tap1	6509	0.108	-0.0171	No
34	Rhot2	6818	0.096	-0.0289	No
35	Bax	7018	0.089	-0.0355	No
36	H1f0	7019	0.089	-0.0321	No
37	Bik	7246	0.081	-0.0404	No
38	Hgf	7423	0.076	-0.0463	No
39	Cd44	7604	0.069	-0.0527	No
40	Ifitm3	7707	0.065	-0.0554	No
41	Bcl10	7822	0.061	-0.0588	No
42	Tgfbr3	7951	0.055	-0.0631	No
43	Crebbp	8013	0.053	-0.0642	No
44	Birc3	8195	0.046	-0.0715	No
45	Plcb2	8575	0.032	-0.0893	No
46	Gsr	8737	0.027	-0.0964	No
47	Timp3	8867	0.022	-0.1020	No
48	Dffa	8933	0.019	-0.1046	No
49	Madd	9045	0.016	-0.1096	No
50	Rela	9147	0.012	-0.1142	No
51	Bcl2l11	9256	0.008	-0.1193	No
52	Cdkn1b	9370	0.004	-0.1248	No
53	Tspo	9373	0.004	-0.1247	No
54	Gstm2	9768	-0.007	-0.1443	No
55	Hmgb2	9815	-0.009	-0.1462	No
56	Mcl1	9820	-0.009	-0.1461	No
57	Txnip	9873	-0.011	-0.1483	No
58	Nedd9	9924	-0.013	-0.1503	No
59	Tnfrsf12a	10092	-0.018	-0.1580	No
60	Gpx3	10098	-0.018	-0.1576	No
61	Cdkn1a	10117	-0.019	-0.1578	No
62	Il18	10351	-0.027	-0.1684	No
63	Satb1	10359	-0.027	-0.1678	No
64	Rock1	10497	-0.032	-0.1734	No
65	Psen1	10526	-0.034	-0.1735	No
66	Aifm3	10538	-0.034	-0.1728	No
67	Isg20	10677	-0.039	-0.1782	No
68	Pak1	10884	-0.047	-0.1868	No
69	Dnm1l	10930	-0.049	-0.1872	No
70	Rhob	11296	-0.061	-0.2032	No
71	Btg3	11343	-0.062	-0.2032	No
72	Sod2	11415	-0.064	-0.2043	No
73	Cd69	11520	-0.068	-0.2069	No
74	Bid	11719	-0.076	-0.2140	No
75	Smad7	11742	-0.077	-0.2121	No
76	Gna15	11875	-0.082	-0.2156	No
77	Pdcd4	11974	-0.086	-0.2173	No
78	F2r	12120	-0.091	-0.2211	No
79	Tnf	12224	-0.095	-0.2226	No
80	Btg2	12511	-0.107	-0.2329	Yes
81	Cdk2	12528	-0.108	-0.2296	Yes
82	Cflar	12636	-0.112	-0.2307	Yes
83	Bcl2l2	12725	-0.116	-0.2307	Yes
84	Lmna	12765	-0.117	-0.2282	Yes
85	Bnip3l	12782	-0.118	-0.2245	Yes
86	Add1	12885	-0.120	-0.2251	Yes
87	Diablo	12895	-0.120	-0.2210	Yes
88	Eno2	12908	-0.121	-0.2170	Yes
89	Dpyd	13053	-0.126	-0.2194	Yes
90	Casp1	13117	-0.129	-0.2177	Yes
91	Bgn	13144	-0.129	-0.2140	Yes
92	Pdgfrb	13201	-0.132	-0.2118	Yes
93	App	13372	-0.138	-0.2151	Yes
94	Cdc25b	13600	-0.146	-0.2209	Yes
95	Gsn	13792	-0.154	-0.2246	Yes
96	Lgals3	13903	-0.159	-0.2241	Yes
97	Erbb3	13966	-0.162	-0.2211	Yes
98	Ppp2r5b	14152	-0.170	-0.2239	Yes
99	Dcn	14185	-0.171	-0.2190	Yes
100	Rara	14350	-0.177	-0.2205	Yes
101	Tgfb2	14387	-0.179	-0.2154	Yes
102	Retsat	14434	-0.181	-0.2109	Yes
103	Pmaip1	14682	-0.190	-0.2160	Yes
104	Cav1	14846	-0.198	-0.2166	Yes
105	Sqstm1	14852	-0.198	-0.2093	Yes
106	Bmf	15001	-0.206	-0.2089	Yes
107	Casp4	15265	-0.219	-0.2138	Yes
108	Tnfsf10	15269	-0.220	-0.2056	Yes
109	Vdac2	15511	-0.230	-0.2089	Yes
110	Sod1	15622	-0.236	-0.2054	Yes
111	Anxa1	15802	-0.245	-0.2051	Yes
112	Timp2	15903	-0.250	-0.2006	Yes
113	Casp8	15955	-0.252	-0.1936	Yes
114	Dap	16025	-0.254	-0.1873	Yes
115	Ifngr1	16159	-0.262	-0.1840	Yes
116	Gadd45b	16622	-0.290	-0.1962	Yes
117	Krt18	16740	-0.295	-0.1908	Yes
118	Ccnd2	16936	-0.307	-0.1889	Yes
119	Casp7	17002	-0.310	-0.1804	Yes
120	Ank	17130	-0.318	-0.1746	Yes
121	Ebp	17263	-0.326	-0.1688	Yes
122	Gch1	17423	-0.336	-0.1640	Yes
123	Mgmt	17693	-0.354	-0.1640	Yes
124	Casp6	18086	-0.387	-0.1690	Yes
125	Casp3	18669	-0.447	-0.1812	Yes
126	Psen2	18789	-0.460	-0.1697	Yes
127	Ccnd1	18879	-0.471	-0.1561	Yes
128	Gpx1	19054	-0.494	-0.1460	Yes
129	Ptk2	19127	-0.506	-0.1303	Yes
130	Pea15a	19149	-0.510	-0.1119	Yes
131	Fas	19313	-0.541	-0.0995	Yes
132	Sc5d	19354	-0.550	-0.0805	Yes
133	Ier3	19366	-0.551	-0.0601	Yes
134	Bcl2l1	19480	-0.578	-0.0437	Yes
135	Ddit3	19507	-0.585	-0.0227	Yes
136	Mmp2	19552	-0.594	-0.0023	Yes
137	Casp9	19790	-0.683	0.0119	Yes