| Dataset | GMP.GMP.neu_Pheno.cls #Group1_versus_Group2.GMP.neu_Pheno.cls #Group1_versus_Group2_repos |
| Phenotype | GMP.neu_Pheno.cls#Group1_versus_Group2_repos |
| Upregulated in class | 0 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | 0.19784576 |
| Normalized Enrichment Score (NES) | 0.9147165 |
| Nominal p-value | 0.6435272 |
| FDR q-value | 0.9877157 |
| FWER p-Value | 0.999 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Reep1 | 15 | 1.176 | 0.0298 | Yes |
| 2 | Celsr2 | 36 | 1.061 | 0.0564 | Yes |
| 3 | Ccnd1 | 461 | 0.663 | 0.0523 | Yes |
| 4 | Sema3b | 562 | 0.633 | 0.0637 | Yes |
| 5 | Krt18 | 697 | 0.600 | 0.0725 | Yes |
| 6 | Sh3bp5 | 700 | 0.600 | 0.0880 | Yes |
| 7 | Rhobtb3 | 779 | 0.578 | 0.0991 | Yes |
| 8 | Olfml3 | 912 | 0.550 | 0.1068 | Yes |
| 9 | Tob1 | 920 | 0.549 | 0.1207 | Yes |
| 10 | Syngr1 | 1035 | 0.530 | 0.1287 | Yes |
| 11 | Tgm2 | 1166 | 0.508 | 0.1354 | Yes |
| 12 | Pdzk1 | 1388 | 0.481 | 0.1368 | Yes |
| 13 | Bcl2 | 1497 | 0.469 | 0.1435 | Yes |
| 14 | Nrip1 | 1555 | 0.463 | 0.1527 | Yes |
| 15 | Mreg | 1640 | 0.450 | 0.1602 | Yes |
| 16 | Cish | 2020 | 0.410 | 0.1518 | Yes |
| 17 | Thsd4 | 2098 | 0.404 | 0.1584 | Yes |
| 18 | Retreg1 | 2137 | 0.401 | 0.1669 | Yes |
| 19 | Aldh3b1 | 2333 | 0.384 | 0.1671 | Yes |
| 20 | Bcl11b | 2374 | 0.381 | 0.1750 | Yes |
| 21 | Deptor | 2556 | 0.368 | 0.1754 | Yes |
| 22 | Mast4 | 2662 | 0.360 | 0.1795 | Yes |
| 23 | Rps6ka2 | 2672 | 0.359 | 0.1884 | Yes |
| 24 | Sfn | 2723 | 0.356 | 0.1951 | Yes |
| 25 | Cd44 | 3267 | 0.315 | 0.1760 | Yes |
| 26 | Ar | 3281 | 0.314 | 0.1835 | Yes |
| 27 | Mlph | 3422 | 0.305 | 0.1844 | Yes |
| 28 | Sybu | 3585 | 0.294 | 0.1839 | Yes |
| 29 | Slc27a2 | 3588 | 0.294 | 0.1914 | Yes |
| 30 | Kdm4b | 3612 | 0.293 | 0.1978 | Yes |
| 31 | Ncor2 | 3811 | 0.278 | 0.1951 | No |
| 32 | Tbc1d30 | 3910 | 0.272 | 0.1972 | No |
| 33 | Slc7a2 | 4218 | 0.254 | 0.1884 | No |
| 34 | Il17rb | 4312 | 0.250 | 0.1902 | No |
| 35 | Calb2 | 4352 | 0.247 | 0.1947 | No |
| 36 | Pex11a | 4790 | 0.226 | 0.1786 | No |
| 37 | Celsr1 | 4855 | 0.223 | 0.1811 | No |
| 38 | Lrig1 | 4962 | 0.219 | 0.1815 | No |
| 39 | Stc2 | 4999 | 0.217 | 0.1853 | No |
| 40 | Slc2a1 | 5153 | 0.209 | 0.1830 | No |
| 41 | Elovl2 | 5179 | 0.208 | 0.1872 | No |
| 42 | Nav2 | 5189 | 0.208 | 0.1921 | No |
| 43 | Myb | 5303 | 0.202 | 0.1917 | No |
| 44 | Abca3 | 5493 | 0.192 | 0.1872 | No |
| 45 | Wwc1 | 5523 | 0.190 | 0.1907 | No |
| 46 | Add3 | 5527 | 0.190 | 0.1954 | No |
| 47 | Svil | 5766 | 0.178 | 0.1881 | No |
| 48 | Ablim1 | 5772 | 0.177 | 0.1924 | No |
| 49 | Ppif | 5976 | 0.167 | 0.1866 | No |
| 50 | Tiam1 | 6134 | 0.161 | 0.1828 | No |
| 51 | Inpp5f | 6158 | 0.160 | 0.1858 | No |
| 52 | Siah2 | 6170 | 0.159 | 0.1894 | No |
| 53 | Hr | 6763 | 0.135 | 0.1631 | No |
| 54 | Itpk1 | 6780 | 0.134 | 0.1658 | No |
| 55 | Slc24a3 | 6845 | 0.131 | 0.1660 | No |
| 56 | Zfp185 | 6902 | 0.129 | 0.1665 | No |
| 57 | Dynlt3 | 7040 | 0.123 | 0.1628 | No |
| 58 | Slc1a4 | 7092 | 0.121 | 0.1634 | No |
| 59 | Klf10 | 7306 | 0.112 | 0.1556 | No |
| 60 | Med24 | 7341 | 0.110 | 0.1568 | No |
| 61 | Aff1 | 7367 | 0.109 | 0.1583 | No |
| 62 | Mybl1 | 7499 | 0.103 | 0.1544 | No |
| 63 | Tgif2 | 7538 | 0.101 | 0.1551 | No |
| 64 | Igf1r | 7563 | 0.100 | 0.1565 | No |
| 65 | Greb1 | 7701 | 0.095 | 0.1521 | No |
| 66 | Jak2 | 7938 | 0.086 | 0.1425 | No |
| 67 | Nadsyn1 | 8033 | 0.082 | 0.1399 | No |
| 68 | Dhcr7 | 8059 | 0.081 | 0.1407 | No |
| 69 | Tmprss3 | 8160 | 0.077 | 0.1377 | No |
| 70 | Cyp26b1 | 8508 | 0.064 | 0.1219 | No |
| 71 | Abhd2 | 8549 | 0.062 | 0.1215 | No |
| 72 | Ptges | 9057 | 0.043 | 0.0971 | No |
| 73 | Rasgrp1 | 9092 | 0.042 | 0.0965 | No |
| 74 | Olfm1 | 9109 | 0.041 | 0.0967 | No |
| 75 | Opn3 | 9170 | 0.038 | 0.0947 | No |
| 76 | Rapgefl1 | 9486 | 0.026 | 0.0795 | No |
| 77 | Med13l | 9498 | 0.026 | 0.0797 | No |
| 78 | Rbbp8 | 10193 | 0.002 | 0.0448 | No |
| 79 | Krt8 | 10267 | 0.000 | 0.0411 | No |
| 80 | Tjp3 | 10378 | -0.003 | 0.0356 | No |
| 81 | Slc39a6 | 10568 | -0.009 | 0.0264 | No |
| 82 | Chpt1 | 10595 | -0.010 | 0.0253 | No |
| 83 | Fhl2 | 10659 | -0.012 | 0.0225 | No |
| 84 | Nxt1 | 10817 | -0.018 | 0.0150 | No |
| 85 | Clic3 | 10988 | -0.024 | 0.0071 | No |
| 86 | Elovl5 | 11007 | -0.025 | 0.0068 | No |
| 87 | Abat | 11119 | -0.028 | 0.0020 | No |
| 88 | Slc37a1 | 11533 | -0.043 | -0.0177 | No |
| 89 | Tmem164 | 11592 | -0.045 | -0.0194 | No |
| 90 | Papss2 | 11825 | -0.054 | -0.0297 | No |
| 91 | Scnn1a | 11882 | -0.056 | -0.0311 | No |
| 92 | Adcy9 | 12286 | -0.070 | -0.0496 | No |
| 93 | Slc16a1 | 12404 | -0.074 | -0.0535 | No |
| 94 | Bag1 | 12476 | -0.077 | -0.0551 | No |
| 95 | Klf4 | 12532 | -0.079 | -0.0558 | No |
| 96 | Mybbp1a | 12563 | -0.080 | -0.0552 | No |
| 97 | Wfs1 | 12647 | -0.083 | -0.0572 | No |
| 98 | Ttc39a | 12663 | -0.084 | -0.0558 | No |
| 99 | Farp1 | 12697 | -0.085 | -0.0552 | No |
| 100 | Dlc1 | 12702 | -0.086 | -0.0532 | No |
| 101 | Fkbp5 | 12708 | -0.086 | -0.0512 | No |
| 102 | Kcnk5 | 13598 | -0.117 | -0.0930 | No |
| 103 | Rhod | 13703 | -0.121 | -0.0950 | No |
| 104 | Ugcg | 14098 | -0.136 | -0.1113 | No |
| 105 | Slc26a2 | 14116 | -0.137 | -0.1086 | No |
| 106 | Rab31 | 14202 | -0.141 | -0.1092 | No |
| 107 | B4galt1 | 14306 | -0.144 | -0.1107 | No |
| 108 | Frk | 14402 | -0.148 | -0.1116 | No |
| 109 | Scarb1 | 14489 | -0.151 | -0.1120 | No |
| 110 | Kazn | 14516 | -0.153 | -0.1094 | No |
| 111 | Rab17 | 14592 | -0.156 | -0.1091 | No |
| 112 | Tiparp | 14618 | -0.157 | -0.1063 | No |
| 113 | Elf1 | 14635 | -0.158 | -0.1030 | No |
| 114 | Sult2b1 | 14727 | -0.162 | -0.1033 | No |
| 115 | Fasn | 14800 | -0.165 | -0.1027 | No |
| 116 | Arl3 | 15054 | -0.175 | -0.1109 | No |
| 117 | Slc22a5 | 15057 | -0.175 | -0.1064 | No |
| 118 | Myc | 15084 | -0.176 | -0.1031 | No |
| 119 | Plaat3 | 15201 | -0.181 | -0.1042 | No |
| 120 | Rrp12 | 15277 | -0.185 | -0.1032 | No |
| 121 | Mapt | 15440 | -0.190 | -0.1064 | No |
| 122 | Amfr | 15511 | -0.193 | -0.1049 | No |
| 123 | Blvrb | 15664 | -0.200 | -0.1074 | No |
| 124 | Anxa9 | 15791 | -0.205 | -0.1084 | No |
| 125 | Fkbp4 | 15846 | -0.207 | -0.1057 | No |
| 126 | Gab2 | 15897 | -0.210 | -0.1028 | No |
| 127 | Slc19a2 | 15936 | -0.211 | -0.0992 | No |
| 128 | Slc1a1 | 16115 | -0.221 | -0.1024 | No |
| 129 | Fdft1 | 16129 | -0.221 | -0.0973 | No |
| 130 | Endod1 | 16159 | -0.222 | -0.0930 | No |
| 131 | Mpped2 | 16187 | -0.224 | -0.0885 | No |
| 132 | Gla | 16284 | -0.229 | -0.0874 | No |
| 133 | P2ry2 | 16607 | -0.244 | -0.0973 | No |
| 134 | Snx24 | 16652 | -0.247 | -0.0931 | No |
| 135 | Mindy1 | 16749 | -0.252 | -0.0913 | No |
| 136 | Isg20l2 | 16861 | -0.259 | -0.0902 | No |
| 137 | Podxl | 16924 | -0.263 | -0.0865 | No |
| 138 | Pmaip1 | 16999 | -0.266 | -0.0833 | No |
| 139 | Flnb | 17101 | -0.271 | -0.0813 | No |
| 140 | Sec14l2 | 17643 | -0.307 | -0.1006 | No |
| 141 | Rara | 17647 | -0.307 | -0.0928 | No |
| 142 | Il6st | 17686 | -0.309 | -0.0866 | No |
| 143 | Cbfa2t3 | 17727 | -0.312 | -0.0805 | No |
| 144 | Cant1 | 17760 | -0.314 | -0.0740 | No |
| 145 | Akap1 | 17820 | -0.318 | -0.0687 | No |
| 146 | Tpd52l1 | 18173 | -0.343 | -0.0775 | No |
| 147 | Igfbp4 | 18204 | -0.346 | -0.0700 | No |
| 148 | Slc7a5 | 18348 | -0.358 | -0.0679 | No |
| 149 | Dhrs3 | 18430 | -0.367 | -0.0624 | No |
| 150 | Muc1 | 18615 | -0.384 | -0.0617 | No |
| 151 | Unc119 | 18691 | -0.393 | -0.0553 | No |
| 152 | Gfra1 | 18913 | -0.417 | -0.0555 | No |
| 153 | Fos | 19006 | -0.427 | -0.0491 | No |
| 154 | Asb13 | 19141 | -0.442 | -0.0443 | No |
| 155 | Bhlhe40 | 19475 | -0.502 | -0.0480 | No |
| 156 | Myof | 19643 | -0.548 | -0.0422 | No |
| 157 | Car12 | 19660 | -0.552 | -0.0287 | No |
| 158 | Gja1 | 19724 | -0.574 | -0.0169 | No |
| 159 | Pgr | 19770 | -0.590 | -0.0038 | No |
| 160 | Xbp1 | 19854 | -0.641 | 0.0087 | No |

